DR908652

Overview
NameDR908652
Unique NameDR908652
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908652 vs. ExPASy Swiss-Prot
Match: FIE2_MAIZE (Polycomb group protein FIE2 OS=Zea mays GN=FIE2 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.188e-47
Identity = 85/105 (80.95%), Postives = 93/105 (88.57%), Query Frame = 2
Query:    2 VLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 316
            VLWEPK KEQSPGEG+ DILQKYPVPECDIWFIKFSCDFH+N  AIGNREGKI+VWE+QSSPPVLIARL + Q KSPIRQTA+S+DGSTIL   EDG IWRWD +
Sbjct:  268 VLWEPKTKEQSPGEGSIDILQKYPVPECDIWFIKFSCDFHFNQLAIGNREGKIYVWEVQSSPPVLIARLYNQQCKSPIRQTAVSFDGSTILGAGEDGTIWRWDEV 372          
BLAST of DR908652 vs. ExPASy Swiss-Prot
Match: FIE_ARATH (Polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM OS=Arabidopsis thaliana GN=FIE PE=1 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 5.661e-44
Identity = 76/105 (72.38%), Postives = 91/105 (86.67%), Query Frame = 2
Query:    2 VLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 316
            +LWEP++KE SPGEG +D+L +YPVP CDIWFIKFSCD H ++ AIGN+EGK++VW+L+S PPVLI +LSH QSKS IRQTAMS DGSTIL+CCEDG IWRWD I
Sbjct:  263 LLWEPQLKENSPGEGASDVLLRYPVPMCDIWFIKFSCDLHLSSVAIGNQEGKVYVWDLKSCPPVLITKLSHNQSKSVIRQTAMSVDGSTILACCEDGTIWRWDVI 367          
BLAST of DR908652 vs. ExPASy Swiss-Prot
Match: FIE1_MAIZE (Polycomb group protein FIE1 OS=Zea mays GN=FIE1 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.884e-39
Identity = 69/105 (65.71%), Postives = 88/105 (83.81%), Query Frame = 2
Query:    2 VLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 316
            +LWEPK  ++ PGEG+ D+LQKYPVP+C +WF+KFSCDF+ N  AIGN +G+I+VWE+QSSPPVLI RL + + KSPIRQTA+S+DGSTIL   +DGAIWRWD +
Sbjct:  326 LLWEPKPDKRRPGEGSVDVLQKYPVPKCSLWFMKFSCDFYSNQMAIGNNKGEIYVWEVQSSPPVLIDRLCNQECKSPIRQTAVSFDGSTILGAADDGAIWRWDEV 430          
BLAST of DR908652 vs. ExPASy Swiss-Prot
Match: EED_CHICK (Polycomb protein EED OS=Gallus gallus GN=EED PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.085e-18
Identity = 42/112 (37.50%), Postives = 67/112 (59.82%), Query Frame = 2
Query:    2 VLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP--VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 316
            V W+P KM++      P E    IL ++   +CDIW+++FS DF     A+GN+ GK++VW+L+   P       L+H +  + IRQT+ S D S +++ C+D +IWRWD +
Sbjct:  334 VCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEIEDPHKAKCTTLTHPKCVAAIRQTSFSRDSSILIAVCDDASIWRWDRL 445          
BLAST of DR908652 vs. ExPASy Swiss-Prot
Match: EED_MOUSE (Polycomb protein EED OS=Mus musculus GN=Eed PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.335e-18
Identity = 42/112 (37.50%), Postives = 67/112 (59.82%), Query Frame = 2
Query:    2 VLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP--VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 316
            V W+P KM++      P E    IL ++   +CDIW+++FS DF     A+GN+ GK++VW+L+   P       L+H +  + IRQT+ S D S +++ C+D +IWRWD +
Sbjct:  329 VCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 440          
BLAST of DR908652 vs. ExPASy Swiss-Prot
Match: EED_HUMAN (Polycomb protein EED OS=Homo sapiens GN=EED PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 5.335e-18
Identity = 42/112 (37.50%), Postives = 67/112 (59.82%), Query Frame = 2
Query:    2 VLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP--VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 316
            V W+P KM++      P E    IL ++   +CDIW+++FS DF     A+GN+ GK++VW+L+   P       L+H +  + IRQT+ S D S +++ C+D +IWRWD +
Sbjct:  329 VCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 440          
BLAST of DR908652 vs. ExPASy Swiss-Prot
Match: EED_BOVIN (Polycomb protein EED OS=Bos taurus GN=EED PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.335e-18
Identity = 42/112 (37.50%), Postives = 67/112 (59.82%), Query Frame = 2
Query:    2 VLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP--VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 316
            V W+P KM++      P E    IL ++   +CDIW+++FS DF     A+GN+ GK++VW+L+   P       L+H +  + IRQT+ S D S +++ C+D +IWRWD +
Sbjct:  329 VCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 440          
BLAST of DR908652 vs. ExPASy Swiss-Prot
Match: EEDA_XENLA (Polycomb protein eed-A OS=Xenopus laevis GN=eed-A PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.968e-18
Identity = 41/112 (36.61%), Postives = 67/112 (59.82%), Query Frame = 2
Query:    2 VLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP--VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 316
            V W+P KM++      P E    IL ++   +CDIW+++FS DF     A+GN+ GK++VW+L++  P       L++ +  S +RQT+ S D S +++ C+D  IWRWD +
Sbjct:  326 VCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEAEDPHKAKCTTLTYPKCASAVRQTSFSRDSSILVAVCDDATIWRWDRL 437          
BLAST of DR908652 vs. ExPASy Swiss-Prot
Match: EED_DANRE (Polycomb protein eed OS=Danio rerio GN=eed PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 3.458e-17
Identity = 41/112 (36.61%), Postives = 63/112 (56.25%), Query Frame = 2
Query:    2 VLWEPKMKEQS-----PGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP--VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 316
            V W+P   E       P E    IL ++   +CDIW+++FS DF     A+GN+ GK++VW+L+   P       L+  +  S IRQT+ S D S +++ C+D +IWRWD +
Sbjct:  331 VCWKPGRMEDDIDRIKPNESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTLPRCTSAIRQTSFSRDSSILIAVCDDASIWRWDRL 442          
BLAST of DR908652 vs. ExPASy Swiss-Prot
Match: EEDB_XENLA (Polycomb protein eed-B OS=Xenopus laevis GN=eed-B PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 5.899e-17
Identity = 41/112 (36.61%), Postives = 65/112 (58.04%), Query Frame = 2
Query:    2 VLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP--VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 316
            V W+P KM++        E    IL ++   +CDIW+++FS DF     A+GN+ GK++VW+L+   P       L++ +  S IRQT+ S D S +++ C+D  IWRWD +
Sbjct:  326 VCWKPGKMEDDIEKIKASESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTYPKCASAIRQTSFSRDSSVLIAVCDDSTIWRWDRL 437          
The following BLAST results are available for this feature:
BLAST of DR908652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
FIE2_MAIZE4.188e-4780.95Polycomb group protein FIE2 OS=Zea mays GN=FIE2 PE... [more]
FIE_ARATH5.661e-4472.38Polycomb group protein FERTILIZATION-INDEPENDENT E... [more]
FIE1_MAIZE1.884e-3965.71Polycomb group protein FIE1 OS=Zea mays GN=FIE1 PE... [more]
EED_CHICK4.085e-1837.50Polycomb protein EED OS=Gallus gallus GN=EED PE=2 ... [more]
EED_MOUSE5.335e-1837.50Polycomb protein EED OS=Mus musculus GN=Eed PE=1 S... [more]
EED_HUMAN5.335e-1837.50Polycomb protein EED OS=Homo sapiens GN=EED PE=1 S... [more]
EED_BOVIN5.335e-1837.50Polycomb protein EED OS=Bos taurus GN=EED PE=2 SV=... [more]
EEDA_XENLA6.968e-1836.61Polycomb protein eed-A OS=Xenopus laevis GN=eed-A ... [more]
EED_DANRE3.458e-1736.61Polycomb protein eed OS=Danio rerio GN=eed PE=2 SV... [more]
EEDB_XENLA5.899e-1736.61Polycomb protein eed-B OS=Xenopus laevis GN=eed-B ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16780 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-37_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908652 ID=DR908652; Name=DR908652; organism=Citrus sinensis; type=EST; length=601bp
TGTATTGTGGGAACCAAAAATGAAGGAACAGTCGCCGGGGGAGGGTACAG
CTGACATACTTCAGAAATACCCTGTCCCAGAGTGTGATATCTGGTTCATC
AAGTTTTCCTGTGATTTTCATTACAATGCAGCTGCCATAGGGAATAGAGA
AGGGAAGATTTTTGTTTGGGAGCTACAAAGTAGCCCCCCTGTTCTAATTG
CAAGGCTGTCTCATGCTCAGTCAAAATCTCCCATTAGACAGACTGCCATG
TCCTATGATGGAAGCACCATTCTCAGCTGTTGTGAGGATGGAGCAATATG
GCGCTGGGATGCTATACCGACTTAAGAAGTCTACCCAAATGGGTCTATCG
GATCCTCATTTTGTTGTTTTAGTTTTGGGGTAATATATCAATGTTGTTTA
GTTATGTTCTAATATTATTAGTTATGTTTCCGTGGTCGTTTGGTTAATCA
AGTTGATGCATGGCAGGACTTCTTGGACTTACAGGCAAACGATACCTTTA
GCGACATCATATTTGTGTATAACATGAGATAGTTGCATGAACTGTCAATC
ATTGTAATATTGGTGATTCATAGTCATGCTACTTAAAAATGAAAAAAAAA
A
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