DR908647

Overview
NameDR908647
Unique NameDR908647
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8921 contig Csv1_Contig8921:476..1077. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908647 vs. ExPASy Swiss-Prot
Match: NEP1_NEPGR (Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.716e-16
Identity = 64/207 (30.92%), Postives = 96/207 (46.38%), Query Frame = 3
Query:   18 GCTDNNTG-DQNGASGIMGLDRGPVSIISKTNISYFFYCLHSPYGST-----------GYITFGKPDTVNKKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTE------IDSGTIITRFPAPVYSALRSAFXXXXXXXXXXXXIEDLFDTCYDL-SAYKTVVVPKITIHFLGGVDLELDVRETLVVESVRQVCL 581
            GC +NN G  Q   +G++G+ RGP+S+ S+ +++ F YC+ +P GS+             +T G P+T          ++ + +   FY+ITL G+SVG  RLP+  S F   S        IDSGT +T F    Y ++R  F                FD C+   S    + +P   +HF GG DLEL      +  S   +CL
Sbjct:  202 GCGENNQGFGQGNGAGLVGMGRGPLSLPSQLDVTKFSYCM-TPIGSSTPSNLLLGSLANSVTAGSPNTT---------LIQSSQIPTFYYITLNGLSVGSTRLPIDPSAFALNSNNGTGGIIIDSGTTLTYFVNNAYQSVRQEFISQINLPVVNGSSSG-FDLCFQTPSDPSNLQIPTFVMHFDGG-DLELPSENYFISPSNGLICL 396          
BLAST of DR908647 vs. ExPASy Swiss-Prot
Match: NEP2_NEPGR (Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.098e-14
Identity = 62/198 (31.31%), Postives = 99/198 (50.00%), Query Frame = 3
Query:   18 GCTDNNTG-DQNGASGIMGLDRGPVSIISKTNISYFFYCLHSPYGST--GYITFGKPDTVNKKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTE------IDSGTIITRFPAPVYSALRSAFXXXXXXXXXXXXIEDLFDTCYDL-SAYKTVVVPKITIHFLGGVDLELDVRETLVVESVRQVCL 581
            GC ++N G  Q   +G++G+  GP+S+ S+  +  F YC+ S YGS+    +  G   +   +    T ++ +     +Y+ITL GI+VGG+ L + +S F +L  +      IDSGT +T  P   Y+A+  AF               L  TC+   S   TV VP+I++ F GGV L L  +  L+  +   +CL
Sbjct:  203 GCGEDNQGFGQGNGAGLIGMGWGPLSLPSQLGVGQFSYCMTS-YGSSSPSTLALGSAASGVPEGSPSTTLIHSSLNPTYYYITLQGITVGGDNLGIPSSTF-QLQDDGTGGMIIDSGTTLTYLPQDAYNAVAQAFTDQINLPTVDESSSGL-STCFQQPSDGSTVQVPEISMQFDGGV-LNLGEQNILISPAEGVICL 396          
The following BLAST results are available for this feature:
BLAST of DR908647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NEP1_NEPGR1.716e-1630.92Aspartic proteinase nepenthesin-1 OS=Nepenthes gra... [more]
NEP2_NEPGR2.098e-1431.31Aspartic proteinase nepenthesin-2 OS=Nepenthes gra... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16775 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-54_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908647 ID=DR908647; Name=DR908647; organism=Citrus sinensis; type=EST; length=602bp
GGTACCCTTTTCTTCTGGGTTGCACCGACAACAACACTGGCGACCAAAAC
GGAGCATCCGGAATTATGGGTCTCGACCGAGGTCCGGTATCCATAATTTC
AAAAACCAATATAAGCTACTTCTTTTATTGTCTACATTCGCCATACGGCT
CCACAGGCTACATAACTTTTGGCAAACCTGATACTGTGAACAAGAAGTTC
GTGAAATATACTCCAATTGTCACTACCCCCGAACAGTCTGAATTTTACCA
TATTACCCTTACTGGAATAAGTGTCGGTGGGGAAAGACTTCCTTTGAAAG
CTTCATATTTTACTAAGTTGAGTACAGAAATCGACTCGGGCACCATCATC
ACGAGGTTTCCTGCACCTGTGTACTCAGCTCTGAGATCAGCATTTCGTAA
AAGGATGAAGAAATATAAGATGGGAAAAGGAATTGAAGATCTTTTTGATA
CTTGTTATGATTTGAGTGCTTATAAAACAGTTGTTGTACCAAAGATTACA
ATCCACTTCTTAGGTGGTGTCGACCTTGAACTGGACGTGAGGGAGACTCT
GGTTGTCGAATCTGTGAGGCAAGTGTGTTTAGGCTTCGCTTTACTTCCTT
CG
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