DR908640

Overview
NameDR908640
Unique NameDR908640
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig297 contig Csv1_Contig297:152..746. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908640 vs. ExPASy Swiss-Prot
Match: CUTA_ARATH (Protein CutA, chloroplastic OS=Arabidopsis thaliana GN=CUTA PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 4.179e-55
Identity = 116/168 (69.05%), Postives = 139/168 (82.74%), Query Frame = 3
Query:    6 PLVGAFCMLS-LGLTNLCPTLSSSLKTGSAPS---LPFFGSKFSNQARAKSSNTIKMEGNRNTVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTRD 497
            P+VGAFC+LS L +++L  + SS  K+G A S   +P   SKFS++A    S++I+ME +  TVPSIVVYVTVPN+EAGKKLA SIV+ KLAACVN VPGIESVYEW+G++Q+D+EELLIIKTRQSLLE LTEHV ANHEYDVPEVIALPITGGS  YLEWLK+STR+
Sbjct:   20 PIVGAFCVLSTLSISSL--SSSSPFKSGCAQSFSVVPLLRSKFSSKA---FSSSIRMEESSKTVPSIVVYVTVPNREAGKKLANSIVQEKLAACVNIVPGIESVYEWEGKVQSDSEELLIIKTRQSLLEPLTEHVNANHEYDVPEVIALPITGGSDKYLEWLKNSTRN 182          
BLAST of DR908640 vs. ExPASy Swiss-Prot
Match: CUTA1_ORYSJ (Protein CutA 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CUTA1 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.079e-46
Identity = 92/126 (73.02%), Postives = 105/126 (83.33%), Query Frame = 3
Query:  120 FSNQARAKSSNTIKMEGNRNTVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTRD 497
            F+      SS + +ME    TVPSIVVYVTVPNKEAGK+LA SI+  KLAACVN VPGIESVY W+G++QTDAEELLIIKTR+SLL+ LTEHVKANHEYDVPEVIALPI GG+  YLEWLK+STR+
Sbjct:   51 FAGVRSLSSSASARMESTSTTVPSIVVYVTVPNKEAGKRLAGSIISEKLAACVNIVPGIESVYWWEGKVQTDAEELLIIKTRESLLDALTEHVKANHEYDVPEVIALPIKGGNLKYLEWLKNSTRE 176          
BLAST of DR908640 vs. ExPASy Swiss-Prot
Match: CUTA_RAT (Protein CutA OS=Rattus norvegicus GN=Cuta PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.236e-24
Identity = 59/147 (40.14%), Postives = 91/147 (61.90%), Query Frame = 3
Query:   51 LCPTLSSSLKTGSAPSLPFFGSKFSNQARAKSSNTIKMEGNRNTVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSST 491
            L P    S+ +GS PS P           + +S +  + G+ +       +VT PN++  K++A ++V+ +LAACVN +P I S+YEWKG+I+ D+E L++IKT+ SL+  LTE V++ H Y+V EVIALP+  G+ PYL W+   T
Sbjct:   36 LLPRALLSMASGSPPSQP-----------SPASGSGYVPGSVSAA-----FVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTEFVRSVHPYEVAEVIALPVEQGNPPYLHWVHQVT 166          
BLAST of DR908640 vs. ExPASy Swiss-Prot
Match: CUTA_HUMAN (Protein CutA OS=Homo sapiens GN=CUTA PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.236e-24
Identity = 57/147 (38.78%), Postives = 94/147 (63.95%), Query Frame = 3
Query:   51 LCPTLSSSLKTGSAPSLPFFGSKFSNQARAKSSNTIKMEGNRNTVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSST 491
            L P +  ++ +GS P+ P         + A  S +  + G+ +       +VT PN++  K++A ++V+ +LAACVN +P I S+YEWKG+I+ D+E L++IKT+ SL+  LT+ V++ H Y+V EVIALP+  G+ PYL+W++  T
Sbjct:   36 LLPRVLLTMASGSPPTQP---------SPASDSGSGYVPGSVSAA-----FVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVT 168          
BLAST of DR908640 vs. ExPASy Swiss-Prot
Match: CUTA_MOUSE (Protein CutA OS=Mus musculus GN=Cuta PE=2 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 3.815e-24
Identity = 49/97 (50.52%), Postives = 73/97 (75.26%), Query Frame = 3
Query:  201 YVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSST 491
            +VT PN++  K++A ++V+ +LAACVN +P I S+YEWKG+I+ D+E L++IKT+ SL+  LTE V++ H Y+V EVIALP+  G+ PYL W+   T
Sbjct:   70 FVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTEFVRSVHPYEVAEVIALPVEQGNPPYLHWVHQVT 166          
BLAST of DR908640 vs. ExPASy Swiss-Prot
Match: CUTA_XENLA (Protein CutA homolog OS=Xenopus laevis GN=cuta PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 1.893e-23
Identity = 50/93 (53.76%), Postives = 68/93 (73.12%), Query Frame = 3
Query:  201 YVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWL 479
            YVT PN    K +A  +V+ KLAACVN +P I S+YEWKG+++ D E LL+IKTR S +  LTE+V++ H Y+V EVI+LPI  G+ PYL+W+
Sbjct:   53 YVTCPNDTVAKDIARGLVERKLAACVNVIPQITSIYEWKGKLEEDTEVLLMIKTRSSKVSALTEYVRSVHPYEVCEVISLPIEQGNPPYLKWV 145          
BLAST of DR908640 vs. ExPASy Swiss-Prot
Match: CUTA_BOVIN (Protein CutA OS=Bos taurus GN=CUTA PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.893e-23
Identity = 58/147 (39.46%), Postives = 92/147 (62.59%), Query Frame = 3
Query:   51 LCPTLSSSLKTGSAPSLPFFGSKFSNQARAKSSNTIKMEGNRNTVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSST 491
            L P    S+ +GS P+ P           + SS +  + G+ +       +VT PN++  K++A ++V+ +LA CVN VP I S+YEWKG+I+ D+E L++IKT+ SL+  LT+ V++ H Y+V EVIALP+  G+ PYL+W++  T
Sbjct:   36 LLPRALLSMASGSPPAQP-----------SSSSRSAYVPGSVSAA-----FVTCPNEKVAKEIARAVVEKRLA-CVNLVPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNSPYLQWVRQVT 165          
BLAST of DR908640 vs. ExPASy Swiss-Prot
Match: CUTA_THET8 (Divalent-cation tolerance protein cutA OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=cutA PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.473e-23
Identity = 48/99 (48.48%), Postives = 71/99 (71.72%), Query Frame = 3
Query:  195 VVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSST 491
            VV +TVP++E  + +A+++V+ +LAACVN VPG+ S+Y W+GE+  D E LL++KT       L E VKA H Y VPE++ALPI  G++ YL+WL+ +T
Sbjct:    4 VVLITVPSEEVARTIAKALVEERLAACVNIVPGLTSIYRWQGEVVEDQELLLLVKTTTHAFPKLKERVKALHPYTVPEIVALPIAEGNREYLDWLRENT 102          
BLAST of DR908640 vs. ExPASy Swiss-Prot
Match: CUTA_ERWCT (Divalent-cation tolerance protein cutA OS=Erwinia carotovora subsp. atroseptica GN=cutA PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 3.695e-19
Identity = 40/108 (37.04%), Postives = 68/108 (62.96%), Query Frame = 3
Query:  171 NRNTVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 494
            +R    ++V+  T P+    ++LA S+++ +LAACV  +PG  S+Y W+G+++  +E  ++IK+  S  + L  H+K  H YD PE++ LP++GG   YL WL +S R
Sbjct:    3 DRPLCDAVVILCTAPDDACAQRLANSLLETRLAACVTLLPGARSLYYWEGKLEQQSEVQMLIKSDTSHQQALLTHLKQQHPYDTPELLVLPVSGGDSDYLTWLNASLR 110          
BLAST of DR908640 vs. ExPASy Swiss-Prot
Match: CUTA_DANRE (Protein CutA homolog OS=Danio rerio GN=cuta PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.968e-18
Identity = 39/101 (38.61%), Postives = 64/101 (63.37%), Query Frame = 3
Query:  195 VVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTRD 497
            ++ V  P ++  + +   I++ +LAACVN  P   ++Y WKGEI+   E LL+++T+ SL++ L  ++ A H YD+PE+I  PI  GSQ YL+W+  +  D
Sbjct:   49 LLLVNCPTEQTARDIGRIIMEKRLAACVNIFPRTATMYYWKGEIRDATEILLLVRTKTSLVQRLMTYITAIHPYDIPEIITFPINDGSQHYLKWIAEAVTD 149          
The following BLAST results are available for this feature:
BLAST of DR908640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CUTA_ARATH4.179e-5569.05Protein CutA, chloroplastic OS=Arabidopsis thalian... [more]
CUTA1_ORYSJ2.079e-4673.02Protein CutA 1, chloroplastic OS=Oryza sativa subs... [more]
CUTA_RAT2.236e-2440.14Protein CutA OS=Rattus norvegicus GN=Cuta PE=1 SV=... [more]
CUTA_HUMAN2.236e-2438.78Protein CutA OS=Homo sapiens GN=CUTA PE=1 SV=2[more]
CUTA_MOUSE3.815e-2450.52Protein CutA OS=Mus musculus GN=Cuta PE=2 SV=3[more]
CUTA_XENLA1.893e-2353.76Protein CutA homolog OS=Xenopus laevis GN=cuta PE=... [more]
CUTA_BOVIN1.893e-2339.46Protein CutA OS=Bos taurus GN=CUTA PE=1 SV=1[more]
CUTA_THET82.473e-2348.48Divalent-cation tolerance protein cutA OS=Thermus ... [more]
CUTA_ERWCT3.695e-1937.04Divalent-cation tolerance protein cutA OS=Erwinia ... [more]
CUTA_DANRE6.968e-1838.61Protein CutA homolog OS=Danio rerio GN=cuta PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16768 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-21_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908640 ID=DR908640; Name=DR908640; organism=Citrus sinensis; type=EST; length=602bp
GTCTGCCCTTAGTCGGGGCGTTTTGTATGCTAAGCTTGGGCCTCACCAAT
CTCTGTCCCACTCTCTCTTCTTCCCTCAAAACGGGTTCCGCTCCTTCTCT
CCCGTTCTTCGGATCAAAGTTTAGTAACCAAGCTCGCGCGAAGAGTAGTA
ACACGATCAAAATGGAAGGCAACAGAAACACTGTACCAAGTATTGTAGTT
TATGTCACCGTTCCTAACAAAGAAGCAGGAAAGAAACTGGCTGAAAGCAT
AGTGAAAGCAAAACTTGCAGCATGTGTGAATCGAGTGCCAGGTATTGAAT
CAGTTTATGAGTGGAAGGGAGAGATCCAGACAGATGCTGAAGAACTTCTT
ATTATAAAGACTAGGCAATCCCTTTTGGAAACTCTGACAGAGCATGTCAA
GGCAAATCATGAATATGATGTGCCAGAAGTAATTGCCTTGCCCATCACTG
GTGGCAGCCAGCCATACCTAGAGTGGCTAAAAAGCAGTACAAGGGACTGA
CTCCCGCGGATGTAACAAGCGGATGTAGTGTGTGGACGCTGTAACTGATA
AGCTCCTTTTGTTGGGTTGAGTGTGCAAATGGATACTACTACTTGAATAA
AG
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