DR908639

Overview
NameDR908639
Unique NameDR908639
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR908639_ssr533 microsatellite DR908639_ssr533:533..544. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12395 contig Csv1_Contig12395:820..1421. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908639 vs. ExPASy Swiss-Prot
Match: DCAM_SOLTU (S-adenosylmethionine decarboxylase proenzyme OS=Solanum tuberosum GN=SAMDC PE=1 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 3.070e-82
Identity = 148/195 (75.90%), Postives = 170/195 (87.18%), Query Frame = 1
Query:    1 AESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDI 585
            AE+LSL V+ VRYTRGSFIF GAQ FPHR FSEEVAVLDG+FGK    S A +MGSPD T++WHVYSASA +    +PVYTLEMCMTGLDR++ASVFYKT ESSAA MT  SGIRKILPKSEICDFEF+PCGYSMNSIEG AVSTIH+TPEDGF+YASFE+VGY+ + ++L PL+ERVLACF+PAEFSVALH+D+
Sbjct:  103 AETLSLKVQDVRYTRGSFIFPGAQSFPHRHFSEEVAVLDGYFGKLAAGSKAVIMGSPDKTQKWHVYSASAGSVQSNDPVYTLEMCMTGLDREKASVFYKTEESSAAHMTVRSGIRKILPKSEICDFEFEPCGYSMNSIEGAAVSTIHITPEDGFTYASFESVGYNPKTMELGPLVERVLACFEPAEFSVALHADV 297          
BLAST of DR908639 vs. ExPASy Swiss-Prot
Match: DCAM_DATST (S-adenosylmethionine decarboxylase proenzyme OS=Datura stramonium GN=SAMDC PE=2 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 1.524e-81
Identity = 146/195 (74.87%), Postives = 167/195 (85.64%), Query Frame = 1
Query:    1 AESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDI 585
            AE+LSL V+ VRYTRGSFIF GAQ FPHR FSEEVAVLDG+FGK    S A +MG+PD T++WHVYSASA      +PVYTLEMCMTGLDR++ASVFYKT  SSAA MT  SGIRKILP SEICDFEF+PCGYSMNSIEG AVSTIH+TPEDGFSYASFE+VGYD + ++L PL+ERVLACF+PAEFS+ALH+D+
Sbjct:  103 AETLSLKVQDVRYTRGSFIFPGAQSFPHRHFSEEVAVLDGYFGKLAAGSKAVIMGNPDKTQKWHVYSASAGPVQSNDPVYTLEMCMTGLDREKASVFYKTEGSSAAHMTVRSGIRKILPNSEICDFEFEPCGYSMNSIEGAAVSTIHITPEDGFSYASFESVGYDLKTMELGPLVERVLACFEPAEFSIALHADV 297          
BLAST of DR908639 vs. ExPASy Swiss-Prot
Match: DCAM_TOBAC (S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana tabacum GN=SAMDC PE=2 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 5.790e-81
Identity = 146/195 (74.87%), Postives = 165/195 (84.62%), Query Frame = 1
Query:    1 AESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDI 585
            AE+LSL V+ VRYTRGSFIF GAQ FPHR FSEEVAVLDG+FGK    S A +MGSPD  ++WHVYSASA      +PVYTLEMCMTGLDR++ASVFYKT  SSAA MT  SGIRKILP SEICDFEF+PCGYSMNSIEG A+STIH+TPEDGFSYASFEAVGYD + +KL PL+ERVLACF+P EFS+ALH+D+
Sbjct:  103 AETLSLKVQDVRYTRGSFIFPGAQSFPHRHFSEEVAVLDGYFGKLAAGSKAVIMGSPDKAQKWHVYSASAGPIQSNDPVYTLEMCMTGLDREKASVFYKTEGSSAAHMTVRSGIRKILPNSEICDFEFEPCGYSMNSIEGAALSTIHITPEDGFSYASFEAVGYDMKTMKLGPLVERVLACFEPDEFSIALHADV 297          
BLAST of DR908639 vs. ExPASy Swiss-Prot
Match: DCAM_SOLCI (S-adenosylmethionine decarboxylase proenzyme OS=Solanum chilense GN=SAMDC PE=2 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 5.790e-81
Identity = 146/195 (74.87%), Postives = 166/195 (85.13%), Query Frame = 1
Query:    1 AESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDI 585
            AE+LSL V+ VRYTRGSFIF GAQ FPHR FSEEVAVLDG+FGK    S A +MG+PD T++WHVYSASA      +PVYTLEMCM GLDR++ASVFYKT ESSAA MT  SGIRKILPK EICDFEF+PCGYSMNSIEG AVSTIH+TPEDGFSYASFE+VGYD +  +L PL+ERVLACF+PAEFS+ALH+D+
Sbjct:  101 AETLSLKVQDVRYTRGSFIFPGAQSFPHRHFSEEVAVLDGYFGKLAAGSKAVIMGNPDKTQKWHVYSASAGTVQCNDPVYTLEMCMAGLDREKASVFYKTEESSAAHMTVRSGIRKILPKFEICDFEFEPCGYSMNSIEGAAVSTIHITPEDGFSYASFESVGYDPKTTELGPLVERVLACFEPAEFSIALHADV 295          
BLAST of DR908639 vs. ExPASy Swiss-Prot
Match: DCAM_NICSY (S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana sylvestris GN=SAMDC1 PE=2 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 5.790e-81
Identity = 146/195 (74.87%), Postives = 165/195 (84.62%), Query Frame = 1
Query:    1 AESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDI 585
            AE+LSL V+ VRYTRGSFIF GAQ FPHR FSEEVAVLDG+FGK    S A +MGSPD  ++WHVYSASA      +PVYTLEMCMTGLDR++ASVFYKT  SSAA MT  SGIRKILP SEICDFEF+PCGYSMNSIEG A+STIH+TPEDGFSYASFEAVGYD + +KL PL+ERVLACF+P EFS+ALH+D+
Sbjct:  103 AETLSLKVQDVRYTRGSFIFPGAQSFPHRHFSEEVAVLDGYFGKLAAGSKAVIMGSPDKAQKWHVYSASAGPIQSNDPVYTLEMCMTGLDREKASVFYKTEGSSAAHMTVRSGIRKILPNSEICDFEFEPCGYSMNSIEGAALSTIHITPEDGFSYASFEAVGYDMKTMKLGPLVERVLACFEPDEFSIALHADV 297          
BLAST of DR908639 vs. ExPASy Swiss-Prot
Match: DCAM_CATRO (S-adenosylmethionine decarboxylase proenzyme OS=Catharanthus roseus GN=SAMDC PE=1 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 6.402e-80
Identity = 141/195 (72.31%), Postives = 165/195 (84.62%), Query Frame = 1
Query:    1 AESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDI 585
            AESLSLSVR+V+YTRGSFIF GAQ FPHRSFSEEV +LD +FGK G++S AF+MG+PD  ++WHVYSAS  +    +P YTLEMCMTGLDR++ASVFYK+  SSAA+MT  SGIRKILP SEICDFEFDPCGYSMNSIE  A+STIHVTPEDGFSYASFEA GYD +   L  ++ERVLACF+P+EFSVA+H D+
Sbjct:  101 AESLSLSVRNVKYTRGSFIFPGAQSFPHRSFSEEVELLDNYFGKLGLESNAFIMGNPDQPQKWHVYSASVGSEQSSDPTYTLEMCMTGLDREKASVFYKSESSSAALMTTRSGIRKILPDSEICDFEFDPCGYSMNSIEEAAISTIHVTPEDGFSYASFEAAGYDLKAQNLGMMIERVLACFQPSEFSVAVHCDV 295          
BLAST of DR908639 vs. ExPASy Swiss-Prot
Match: DCAM_HELAN (S-adenosylmethionine decarboxylase proenzyme OS=Helianthus annuus GN=SAMDC PE=2 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 3.177e-79
Identity = 143/194 (73.71%), Postives = 168/194 (86.60%), Query Frame = 1
Query:   10 LSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVN---PVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSD 582
            LSL+V+SVRYTRGSFIF GAQ FPHRSF+EEV VLD HFGK GM S A+VMG  +  ++WHVYSASAE+ + V    PVYTLEM MTGL ++ ASVF+K+  SSAA+MTEDSGIRKILP+S+ICDF+FDPCGYSMN+IEGDA+STIHVTPEDGFSYASFEAVGYDF+ + LT L+ERVLACF+P+EFSVALH +
Sbjct:  101 LSLTVQSVRYTRGSFIFPGAQTFPHRSFTEEVMVLDSHFGKLGMCSNAYVMGGAEKDQKWHVYSASAESANLVTQTAPVYTLEMSMTGLSKRNASVFFKSESSSAAVMTEDSGIRKILPESQICDFDFDPCGYSMNAIEGDAISTIHVTPEDGFSYASFEAVGYDFKSMGLTVLIERVLACFEPSEFSVALHGN 294          
BLAST of DR908639 vs. ExPASy Swiss-Prot
Match: DCAM2_ARATH (S-adenosylmethionine decarboxylase proenzyme 2 OS=Arabidopsis thaliana GN=SAMDC2 PE=2 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 1.207e-78
Identity = 136/195 (69.74%), Postives = 164/195 (84.10%), Query Frame = 1
Query:    1 AESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDI 585
            A  LSL V++VRYTRGSF+  G QPFPHR+FSEEV+VLDGHF K G+ S A++MG+ D TK+WHVYSAS+   ++ N VYTLEMCMTGLD+ +ASVFYK   SSA  MT++SGIRKILP+S+ICDFEF+PCGYSMNSIEGDA+STIHVTPEDGFSYASFEAVGYDF  + L+ L+ +VL CFKP +FSVA+HS +
Sbjct:   99 AGELSLDVKAVRYTRGSFLCPGGQPFPHRNFSEEVSVLDGHFAKLGLSSVAYLMGNDDETKKWHVYSASSANSNNKNNVYTLEMCMTGLDKDKASVFYKNESSSAGSMTDNSGIRKILPQSQICDFEFEPCGYSMNSIEGDAISTIHVTPEDGFSYASFEAVGYDFTTMDLSHLVSKVLTCFKPKQFSVAVHSTV 293          
BLAST of DR908639 vs. ExPASy Swiss-Prot
Match: DCAM2_BRAJU (S-adenosylmethionine decarboxylase proenzyme 2 OS=Brassica juncea GN=SAMDC2 PE=2 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 1.577e-78
Identity = 138/199 (69.35%), Postives = 166/199 (83.42%), Query Frame = 1
Query:    1 AESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEA----GSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDI 585
            A  LSL V+SVRYTRGSF+  G QPFPHR+FSEEV+VLDGHF K G+ S A++MG  D TK+WHVYSASA A    G++ N VYTLEMCMTGLD+++ASVFYK   SSA  MT++SGIRKILP+S+ICDFEF+PCGYSMNS+EGDA+STIHVTPEDGFSYASFEAVGYDF  + L+ L+ +VL CF+P +FSVA+HS +
Sbjct:   99 AGELSLEVKSVRYTRGSFLCPGGQPFPHRNFSEEVSVLDGHFAKMGLSSVAYLMGDDDETKKWHVYSASAPARNGNGNNNNNVYTLEMCMTGLDKEKASVFYKNESSSAGSMTDNSGIRKILPQSQICDFEFEPCGYSMNSVEGDAISTIHVTPEDGFSYASFEAVGYDFTTMDLSHLVSKVLTCFEPKQFSVAVHSSV 297          
BLAST of DR908639 vs. ExPASy Swiss-Prot
Match: DCAM_IPONI (S-adenosylmethionine decarboxylase proenzyme OS=Ipomoea nil GN=SAMDC PE=3 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 2.690e-78
Identity = 135/199 (67.84%), Postives = 167/199 (83.92%), Query Frame = 1
Query:    1 AESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDE 597
            A+ LSL V+SV+YTRGSF F   QP+PHR+FSEEVA+LDG+FGK G  S A+VMG     ++WHVYSASAE+  +  P+YTLEMCMTGLD+K ASVF+KT  SSAA+MT+ SGIRKILP S+ICDF+F+PCGYSMN++EG  +STIHVTPEDGFSYASFEA+GYDF+ V L  L++RVL+CF+PAEFSVALH D +G++
Sbjct:  101 ADGLSLKVKSVKYTRGSFNFPEVQPYPHRNFSEEVAILDGYFGKLGTGSKAYVMGGAGKQQQWHVYSASAESAENTFPIYTLEMCMTGLDKKSASVFFKTQSSSAAVMTDASGIRKILPGSDICDFDFEPCGYSMNAVEGGTISTIHVTPEDGFSYASFEAMGYDFKDVNLDALIQRVLSCFQPAEFSVALHCDSIGEK 299          
The following BLAST results are available for this feature:
BLAST of DR908639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
DCAM_SOLTU3.070e-8275.90S-adenosylmethionine decarboxylase proenzyme OS=So... [more]
DCAM_DATST1.524e-8174.87S-adenosylmethionine decarboxylase proenzyme OS=Da... [more]
DCAM_TOBAC5.790e-8174.87S-adenosylmethionine decarboxylase proenzyme OS=Ni... [more]
DCAM_SOLCI5.790e-8174.87S-adenosylmethionine decarboxylase proenzyme OS=So... [more]
DCAM_NICSY5.790e-8174.87S-adenosylmethionine decarboxylase proenzyme OS=Ni... [more]
DCAM_CATRO6.402e-8072.31S-adenosylmethionine decarboxylase proenzyme OS=Ca... [more]
DCAM_HELAN3.177e-7973.71S-adenosylmethionine decarboxylase proenzyme OS=He... [more]
DCAM2_ARATH1.207e-7869.74S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM2_BRAJU1.577e-7869.35S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM_IPONI2.690e-7867.84S-adenosylmethionine decarboxylase proenzyme OS=Ip... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16767 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-19_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908639 ID=DR908639; Name=DR908639; organism=Citrus sinensis; type=EST; length=602bp
GCTGAGTCCCTCTCGTTGTCTGTTCGATCTGTGAGATACACTCGTGGAAG
CTTCATATTTGCTGGGGCTCAGCCATTTCCACACCGTAGCTTCTCTGAGG
AAGTAGCTGTCCTTGATGGACACTTTGGCAAGTTTGGTATGGACAGCACA
GCTTTTGTCATGGGTAGTCCTGACAACACAAAGAGATGGCATGTTTACTC
TGCCTCTGCTGAAGCAGGAAGCCATGTAAACCCAGTTTACACTCTAGAGA
TGTGCATGACTGGTTTGGACAGAAAGAGGGCATCTGTCTTCTACAAAACT
AATGAAAGCTCAGCCGCTATGATGACCGAGGACTCTGGCATCAGAAAGAT
TCTTCCAAAATCTGAGATTTGTGATTTTGAGTTTGACCCTTGTGGTTACT
CCATGAATAGTATTGAAGGGGATGCAGTATCTACTATCCACGTCACACCT
GAAGATGGTTTCAGTTATGCAAGTTTTGAGGCTGTGGGTTATGATTTTGA
GGTTGTGAAGTTGACTCCCTTGCTTGAGAGGGTGCTTGCTTGCTTCAAAC
CCGCTGAGTTTTCTGTTGCTCTGCATTCTGACATTGTTGGCGATGAACAT
GG
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