DR908637

Overview
NameDR908637
Unique NameDR908637
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length603
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1952 contig Csv1_Contig1952:416..1018. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908637 vs. ExPASy Swiss-Prot
Match: CLCC_ARATH (Chloride channel protein CLC-c OS=Arabidopsis thaliana GN=CLC-C PE=1 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 3.537e-54
Identity = 100/121 (82.64%), Postives = 111/121 (91.74%), Query Frame = 2
Query:    2 LVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHVLGLYPHI 364
            LVLL+GKKF+KQ+T  GS I+R  KA DF KAG GKG+K+EDLD+ EEEMEM+VDLHPITNTSPYTV+ET+SLAKAA+LFRQL LRHLCVVPKTPGRPPIVGILTRHDFMPEHVLGLYPHI
Sbjct:  655 LVLLQGKKFSKQRTTFGSQILRSCKARDFGKAGLGKGLKIEDLDLSEEEMEMYVDLHPITNTSPYTVLETLSLAKAAILFRQLGLRHLCVVPKTPGRPPIVGILTRHDFMPEHVLGLYPHI 775          
BLAST of DR908637 vs. ExPASy Swiss-Prot
Match: CLCG_ARATH (Putative chloride channel-like protein CLC-g OS=Arabidopsis thaliana GN=At5g33280 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.721e-38
Identity = 71/121 (58.68%), Postives = 94/121 (77.69%), Query Frame = 2
Query:    2 LVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHVLGLYPHI 364
            L LLK + F        S+ + +FKA +FAK GSG+  K+ED+++ EEE+ M++DLHP +N SPYTVVETMSLAKA +LFR++ +RHL V+PKT  RPP+VGILTRHDFMPEH+LGL+P +
Sbjct:  627 LTLLKKRVFMPSPVACDSNTLSQFKAEEFAKKGSGRSDKIEDVELSEEELNMYLDLHPFSNASPYTVVETMSLAKALILFREVGIRHLLVIPKTSNRPPVVGILTRHDFMPEHILGLHPSV 747          
BLAST of DR908637 vs. ExPASy Swiss-Prot
Match: CLCA_ARATH (Chloride channel protein CLC-a OS=Arabidopsis thaliana GN=CLC-A PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 6.733e-21
Identity = 54/127 (42.52%), Postives = 81/127 (63.78%), Query Frame = 2
Query:    8 LLKGKKFTKQKTMTGS-DIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPK--TPGRPPIVGILTRHDFMPEHVLGLYPHIVNRHK 379
            +LK + F  +K  T   ++  +F   + A+         +D+ I   EM+++VDLHP+TNT+PYTVV++MS+AKA VLFR + LRHL VVPK    G  P++GILTR D    ++L  +PH+ ++HK
Sbjct:  649 VLKKRWFLNEKRRTEEWEVREKFTPVELAEREDN----FDDVAITSSEMQLYVDLHPLTNTTPYTVVQSMSVAKALVLFRSVGLRHLLVVPKIQASGMSPVIGILTRQDLRAYNILQAFPHL-DKHK 770          
BLAST of DR908637 vs. ExPASy Swiss-Prot
Match: CLCB_ARATH (Chloride channel protein CLC-b OS=Arabidopsis thaliana GN=CLC-B PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.700e-20
Identity = 54/120 (45.00%), Postives = 75/120 (62.50%), Query Frame = 2
Query:    8 LLKGKKFTKQKTMTGS-DIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPK--TPGRPPIVGILTRHDFMPEHVLGLYP 358
            +LK + F  +K  T   ++  +F   + A+         +D+ I   EMEM+VDLHP+TNT+PYTV+E MS+AKA VLFRQ+ LRHL +VPK    G  P+VGILTR D    ++L  +P
Sbjct:  654 VLKKRWFLTEKRRTEEWEVREKFPWDELAEREDN----FDDVAITSAEMEMYVDLHPLTNTTPYTVMENMSVAKALVLFRQVGLRHLLIVPKIQASGMCPVVGILTRQDLRAYNILQAFP 769          
BLAST of DR908637 vs. ExPASy Swiss-Prot
Match: CLCD_ARATH (Chloride channel protein CLC-d OS=Arabidopsis thaliana GN=CLC-D PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.453e-15
Identity = 49/114 (42.98%), Postives = 68/114 (59.65%), Query Frame = 2
Query:    2 LVLLKGKKFTKQKTMTGSDIMR--RFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPE 337
            LVLL+ K   +   +      R  R    +FAK  S KG+ +ED+ +  +++EM++DL P  N SPY V E MSL K   LFRQL LRHL VVP+ P R  ++G++TR D + E
Sbjct:  643 LVLLQSKVDFQHSPLPCDPSARNIRHSFSEFAKPVSSKGLCIEDIHLTSDDLEMYIDLAPFLNPSPYVVPEDMSLTKVYNLFRQLGLRHLFVVPR-PSR--VIGLITRKDLLIE 753          
The following BLAST results are available for this feature:
BLAST of DR908637 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CLCC_ARATH3.537e-5482.64Chloride channel protein CLC-c OS=Arabidopsis thal... [more]
CLCG_ARATH2.721e-3858.68Putative chloride channel-like protein CLC-g OS=Ar... [more]
CLCA_ARATH6.733e-2142.52Chloride channel protein CLC-a OS=Arabidopsis thal... [more]
CLCB_ARATH5.700e-2045.00Chloride channel protein CLC-b OS=Arabidopsis thal... [more]
CLCD_ARATH1.453e-1542.98Chloride channel protein CLC-d OS=Arabidopsis thal... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16765 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-39_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908637 ID=DR908637; Name=DR908637; organism=Citrus sinensis; type=EST; length=603bp
TCTTGTGTTGCTCAAAGGAAAGAAATTTACGAAACAGAAAACCATGACTG
GATCAGATATTATGCGGAGGTTCAAGGCACATGATTTTGCCAAAGCAGGA
TCTGGGAAGGGGGTCAAGCTAGAAGATTTGGACATTAAGGAGGAGGAGAT
GGAGATGTTTGTTGATCTCCATCCCATTACTAATACATCTCCATACACAG
TTGTAGAAACAATGTCGCTAGCTAAAGCAGCTGTTCTCTTTCGGCAGCTG
GCCCTCAGGCACTTGTGCGTCGTGCCAAAAACACCCGGGAGGCCTCCTAT
TGTTGGAATCTTAACCCGACATGACTTCATGCCGGAGCATGTGTTAGGAC
TTTACCCACATATTGTTAATCGCCACAAGTAGAGCAGGCAAGCTACAATG
TAGTTTTCGACCTTTATCAGATTCTGTGATATTAGTATGAGGTCACTTTT
AGGTTGAGGAGTTCCATCTTCCCATTGAGTGAGAAAGAGAATTATTAGTT
GAAAAAGGAAATTATGATACGTGAGTGTGTTAATTTATGAACTCAATGTA
TTCAATATTTTAAAGTGAGATATTCTACTCTGTATGCAAAACCAAAAAAA
AAA
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