DR908636

Overview
NameDR908636
Unique NameDR908636
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length589
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6333 contig Csv1_Contig6333:21..609. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908636 vs. ExPASy Swiss-Prot
Match: TRXH2_ARATH (Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TRX2 PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 6.561e-26
Identity = 51/107 (47.66%), Postives = 78/107 (72.90%), Query Frame = 3
Query:  129 VMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIDPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRR 449
            V++  S  +W+  +   K+S++L+V+ ++A+WCGPC+ I+P +   A  + DV F+K+DVD LP+ AK F+ +  +PTFVLVKRGKEI+R++GAKKDEL+ K  K R
Sbjct:   27 VLKFSSSARWQLHFNEIKESNKLLVVDFSASWCGPCRMIEPAIHAMADKFNDVDFVKLDVDELPDVAKEFN-VTAMPTFVLVKRGKEIERIIGAKKDELEKKVSKLR 132          
BLAST of DR908636 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.355e-21
Identity = 43/107 (40.19%), Postives = 73/107 (68.22%), Query Frame = 3
Query:  114 AKTPLVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIDPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMK 434
            A+   V+   +  +W  +++ +K S +L+VI +TA+WCGPC+ I PYV + A  +  V F K+DVD L + A+ +  ++ +P+FV++K G+E++R+VGA+KDEL  K
Sbjct:    2 AEEAQVIACHTVQEWNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAKKFPHVAFFKVDVDDLKDVAEEYK-VEAMPSFVILKEGQEVERIVGARKDELLHK 107          
BLAST of DR908636 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.670e-19
Identity = 43/97 (44.33%), Postives = 64/97 (65.98%), Query Frame = 3
Query:  153 QWRSQYEASKQSDRLVVIYYTAAWCGPCKFIDPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEK 443
            +W   ++   ++ +LVV+ +TA+WCGPC+FI P + D A     V F+K+DVD L   +  +  ++ +PTFV +K GKE+DRVVGAKK+ELQ    K
Sbjct:   22 EWNEYFKKGVETKKLVVVDFTASWCGPCRFIAPILADIAKKMPHVIFLKVDVDELKTVSAEWS-VEAMPTFVFIKDGKEVDRVVGAKKEELQQTIVK 117          
BLAST of DR908636 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.487e-19
Identity = 41/102 (40.20%), Postives = 67/102 (65.69%), Query Frame = 3
Query:  129 VMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIDPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMK 434
            V    S   WRS+ + +  + RLV + +TA WCGPC+ I P   + +  + ++ F+K+DVD L + A+ +D ++ +PTF+ +K GK +D+VVGAKKD+L+ K
Sbjct:    6 VFACHSTEGWRSKLQEAIDTKRLVAVDFTATWCGPCRVIGPVFVELSKKFPEIFFLKVDVDELRDVAQEWD-VEAMPTFIFIKDGKAVDKVVGAKKDDLERK 106          
BLAST of DR908636 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSJ (Thioredoxin H-type OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.554e-19
Identity = 41/105 (39.05%), Postives = 73/105 (69.52%), Query Frame = 3
Query:  114 AKTPLVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIDPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQ 428
            A+  +V+   +K ++ +Q   +K++ ++V+I +TA+WCGPC+FI P   ++A  +    F+K+DVD L E A+ ++ ++ +PTF+ +K G E D+VVGA+KD+LQ
Sbjct:    3 AEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYN-VEAMPTFLFIKDGAEADKVVGARKDDLQ 106          
BLAST of DR908636 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.554e-19
Identity = 41/105 (39.05%), Postives = 73/105 (69.52%), Query Frame = 3
Query:  114 AKTPLVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIDPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQ 428
            A+  +V+   +K ++ +Q   +K++ ++V+I +TA+WCGPC+FI P   ++A  +    F+K+DVD L E A+ ++ ++ +PTF+ +K G E D+VVGA+KD+LQ
Sbjct:    3 AEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYN-VEAMPTFLFIKDGAEADKVVGARKDDLQ 106          
BLAST of DR908636 vs. ExPASy Swiss-Prot
Match: TRXH_BRARA (Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.554e-19
Identity = 44/105 (41.90%), Postives = 69/105 (65.71%), Query Frame = 3
Query:  129 VMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIDPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEK 443
            V+   +   W ++ +A+K+S++L+VI +TA WC PC+FI P   + A  + DV F K+DVD L   AK FD +  +PTFV +K  +++D+VVGA K+E++ K  K
Sbjct:   13 VIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAKEFD-VQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLK 116          
BLAST of DR908636 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.948e-19
Identity = 45/105 (42.86%), Postives = 64/105 (60.95%), Query Frame = 3
Query:  129 VMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIDPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEK 443
            V+   +   W  Q + + +S  LVV+ +TA+WCGPC+FI P+  D A    +V F+K+D D L   A  +  I  +PTF+ +K GK +D+VVGAKKDELQ    K
Sbjct:    8 VIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDW-AIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAK 111          
BLAST of DR908636 vs. ExPASy Swiss-Prot
Match: TRXH_BRAOL (Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.325e-18
Identity = 43/105 (40.95%), Postives = 69/105 (65.71%), Query Frame = 3
Query:  129 VMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIDPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEK 443
            V+   +   W ++ +A+K+S++L+VI +TA WC PC+FI P   + A  + DV F K+DVD L   A+ FD +  +PTFV +K  +++D+VVGA K+E++ K  K
Sbjct:   13 VIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAQEFD-VQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLK 116          
BLAST of DR908636 vs. ExPASy Swiss-Prot
Match: TRXH1_BRANA (Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.325e-18
Identity = 43/105 (40.95%), Postives = 69/105 (65.71%), Query Frame = 3
Query:  129 VMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIDPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEK 443
            V+   +   W ++ +A+K+S++L+VI +TA WC PC+FI P   + A  + DV F K+DVD L   A+ FD +  +PTFV +K  +++D+VVGA K+E++ K  K
Sbjct:   13 VIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAQEFD-VQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLK 116          
The following BLAST results are available for this feature:
BLAST of DR908636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
TRXH2_ARATH6.561e-2647.66Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_FAGES6.355e-2140.19Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]
TRXH1_TOBAC2.670e-1944.33Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH_PICMA3.487e-1940.20Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]
TRXH_ORYSJ4.554e-1939.05Thioredoxin H-type OS=Oryza sativa subsp. japonica... [more]
TRXH_ORYSI4.554e-1939.05Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]
TRXH_BRARA4.554e-1941.90Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 ... [more]
TRXH1_ARATH5.948e-1942.86Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_BRAOL1.325e-1840.95Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 ... [more]
TRXH1_BRANA1.325e-1840.95Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16764 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-37_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908636 ID=DR908636; Name=DR908636; organism=Citrus sinensis; type=EST; length=589bp
TCTATTTTAAGCATTTGTTTCTTCAGATATCTTCAACTTCTTGTGTAACT
AGCAAACTCTGAAATATGGGAGCAAACGTGTCCAGTTTAGAAAATCCTCA
CGGATTCATTCATGCGAAGACGCCTCTGGTCATGGAATTGCAATCCAAGC
ATCAGTGGAGATCTCAATATGAAGCCTCCAAACAGTCCGACAGATTGGTG
GTGATCTATTACACGGCTGCATGGTGCGGACCTTGCAAATTTATCGACCC
GTATGTTAAAGACTTTGCTGCCATGTACACTGATGTCCAATTCATCAAGA
TTGATGTTGACTGGTTGCCGGAAGCAGCCAAGGCATTTGATCTGATTGAC
GTGCTCCCAACGTTCGTTCTGGTTAAAAGAGGCAAAGAAATTGATAGGGT
GGTGGGAGCCAAGAAGGATGAACTACAGATGAAGACGGAGAAGCGCCGCA
ACTGACAGGAATATTGAAGCATCACGGTGTCCCGATCAAGATTCTTGTCA
TCATTAAGATTTAAGACGCACAATCACCAGTGTGTTGCTAAATAAGATTG
CGATCTCTATGTCAAGCAATTGTTTGCTTAAAAAAAAAA
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