DR908631

Overview
NameDR908631
Unique NameDR908631
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length603
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4643 contig Csv1_Contig4643:426..1028. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DR908631 vs. ExPASy Swiss-Prot
Match: PKL_ARATH (CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana GN=PKL PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.237e-15
Identity = 42/141 (29.79%), Postives = 81/141 (57.45%), Query Frame = 2 
Query:    2 PSEEPESERKTTERPSPTSMEIDSQMVDQLPKLXXXXXXXXXXXXCDSDADRLGLAQHYNEMCKVLEENVHEVVKTSLTSQPASAQLRTNLQLLETLCEDVNQILSTQTSPPLEQPMPNEDKELQPEIQSTSAEPSLPQTE 424
            P+EEPE+E K  +    + +E+D +M+D LPK              D++  R+ +AQHYN+MCK+L+EN  E V+  + +QP S ++  + + L+++  ++N ILS  +    +Q   +ED + +P++ +   + +  +T+
Sbjct: 1205 PTEEPEAEPKIADTVGVSFIEVDDEMLDGLPKTDPITSEEIMGAAVDNNQARVEIAQHYNQMCKLLDENARESVQAYVNNQPPSTKVNESFRALKSINGNINTILSITS----DQSKSHED-DTKPDLNNVEMKDTAEETK 1340
The following BLAST results are available for this feature:
BLAST of DR908631 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PKL_ARATH3.237e-1529.79CHD3-type chromatin-remodeling factor PICKLE OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16759 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-21_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908631 ID=DR908631; Name=DR908631; organism=Citrus sinensis; type=EST; length=603bp
CCCGAGTGAAGAGCCTGAGAGTGAAAGAAAGACAACAGAAAGACCAAGTC
CAACCTCAATGGAGATTGATTCCCAAATGGTTGATCAGTTGCCAAAATTA
GAGGCAATTACATCAGAAGAAATATCAGCAGCTGCTTGTGACAGTGATGC
AGATCGATTGGGATTGGCTCAGCATTATAATGAGATGTGCAAGGTACTGG
AAGAAAATGTTCATGAAGTAGTGAAGACATCTTTAACAAGCCAGCCGGCA
AGTGCTCAATTGAGGACGAATCTCCAACTTCTAGAAACCCTTTGTGAAGA
TGTAAACCAGATTCTCTCTACCCAGACAAGTCCTCCATTGGAGCAGCCAA
TGCCAAATGAAGATAAAGAGTTGCAGCCTGAAATTCAGAGCACCTCTGCA
GAGCCAAGTTTGCCGCAGACAGAGCGAGGTGTCAACAAGCTTGATGCTGT
GGTGGAAACTGAGGTAAAGGGTACACCAGAATCCGAGCCAACAGTAGAAG
GAAGTAAAGCATCGAGTAAAAATCCTGCTGTCGCAGACGTGGATTCATCT
CCAGCTGATCCCACATCTTTGCTGGGGAAAACCGGTACTGGCATGGAAAT
GGC
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