DR908627

Overview
NameDR908627
Unique NameDR908627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6295 contig Csv1_Contig6295:358..961. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
[Close]
BLAST of DR908627 vs. ExPASy Swiss-Prot
Match: ATPI_MANES (ATP synthase subunit a, chloroplastic OS=Manihot esculenta GN=atpI PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.102e-47
Identity = 99/117 (84.62%), Postives = 99/117 (84.62%), Query Frame = 3 
Query:    3 TNDINTTVALALLTSIAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADEXXXXXXXXXXXXXXXXXXMFLGLFTSGIQALIFATLAAAYIGESMEGHH 353
            TNDINTTVALALLTSIAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADE                  MFLGLFTSGIQALIFATLAAAYIGESMEGHH
Sbjct:  133 TNDINTTVALALLTSIAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPSVVPIPVMFLGLFTSGIQALIFATLAAAYIGESMEGHH 249
[Close]
BLAST of DR908627 vs. ExPASy Swiss-Prot
Match: ATPI_CITSI (ATP synthase subunit a, chloroplastic OS=Citrus sinensis GN=atpI PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.102e-47
Identity = 99/117 (84.62%), Postives = 99/117 (84.62%), Query Frame = 3 
Query:    3 TNDINTTVALALLTSIAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADEXXXXXXXXXXXXXXXXXXMFLGLFTSGIQALIFATLAAAYIGESMEGHH 353
            TNDINTTVALALLTSIAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADE                  MFLGLFTSGIQALIFATLAAAYIGESMEGHH
Sbjct:  131 TNDINTTVALALLTSIAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPIPVMFLGLFTSGIQALIFATLAAAYIGESMEGHH 247
[Close]
BLAST of DR908627 vs. ExPASy Swiss-Prot
Match: ATPI_OLIPU (ATP synthase subunit a, chloroplastic OS=Olimarabidopsis pumila GN=atpI PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.439e-47
Identity = 98/117 (83.76%), Postives = 99/117 (84.62%), Query Frame = 3 
Query:    3 TNDINTTVALALLTSIAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADEXXXXXXXXXXXXXXXXXXMFLGLFTSGIQALIFATLAAAYIGESMEGHH 353
            TNDINTTVALALLTS+AYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADE                  MFLGLFTSGIQALIFATLAAAYIGESMEGHH
Sbjct:  133 TNDINTTVALALLTSVAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPIPVMFLGLFTSGIQALIFATLAAAYIGESMEGHH 249
[Close]
BLAST of DR908627 vs. ExPASy Swiss-Prot
Match: ATPI_OENPA (ATP synthase subunit a, chloroplastic OS=Oenothera parviflora GN=atpI PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.439e-47
Identity = 98/117 (83.76%), Postives = 99/117 (84.62%), Query Frame = 3 
Query:    3 TNDINTTVALALLTSIAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADEXXXXXXXXXXXXXXXXXXMFLGLFTSGIQALIFATLAAAYIGESMEGHH 353
            TNDINTTVALALLTS+AYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADE                  MFLGLFTSGIQALIFATLAAAYIGESMEGHH
Sbjct:  131 TNDINTTVALALLTSVAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPSVVPIPVMFLGLFTSGIQALIFATLAAAYIGESMEGHH 247
[Close]
BLAST of DR908627 vs. ExPASy Swiss-Prot
Match: ATPI_OENGL (ATP synthase subunit a, chloroplastic OS=Oenothera glazioviana GN=atpI PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.439e-47
Identity = 98/117 (83.76%), Postives = 99/117 (84.62%), Query Frame = 3 
Query:    3 TNDINTTVALALLTSIAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADEXXXXXXXXXXXXXXXXXXMFLGLFTSGIQALIFATLAAAYIGESMEGHH 353
            TNDINTTVALALLTS+AYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADE                  MFLGLFTSGIQALIFATLAAAYIGESMEGHH
Sbjct:  131 TNDINTTVALALLTSVAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPSVVPIPVMFLGLFTSGIQALIFATLAAAYIGESMEGHH 247
[Close]
BLAST of DR908627 vs. ExPASy Swiss-Prot
Match: ATPI_OENEH (ATP synthase subunit a, chloroplastic OS=Oenothera elata subsp. hookeri GN=atpI PE=3 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 1.439e-47
Identity = 98/117 (83.76%), Postives = 99/117 (84.62%), Query Frame = 3 
Query:    3 TNDINTTVALALLTSIAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADEXXXXXXXXXXXXXXXXXXMFLGLFTSGIQALIFATLAAAYIGESMEGHH 353
            TNDINTTVALALLTS+AYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADE                  MFLGLFTSGIQALIFATLAAAYIGESMEGHH
Sbjct:  131 TNDINTTVALALLTSVAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPSVVPIPVMFLGLFTSGIQALIFATLAAAYIGESMEGHH 247
[Close]
BLAST of DR908627 vs. ExPASy Swiss-Prot
Match: ATPI_OENBI (ATP synthase subunit a, chloroplastic OS=Oenothera biennis GN=atpI PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.439e-47
Identity = 98/117 (83.76%), Postives = 99/117 (84.62%), Query Frame = 3 
Query:    3 TNDINTTVALALLTSIAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADEXXXXXXXXXXXXXXXXXXMFLGLFTSGIQALIFATLAAAYIGESMEGHH 353
            TNDINTTVALALLTS+AYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADE                  MFLGLFTSGIQALIFATLAAAYIGESMEGHH
Sbjct:  131 TNDINTTVALALLTSVAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPSVVPIPVMFLGLFTSGIQALIFATLAAAYIGESMEGHH 247
[Close]
BLAST of DR908627 vs. ExPASy Swiss-Prot
Match: ATPI_OENAR (ATP synthase subunit a, chloroplastic OS=Oenothera argillicola GN=atpI PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.439e-47
Identity = 98/117 (83.76%), Postives = 99/117 (84.62%), Query Frame = 3 
Query:    3 TNDINTTVALALLTSIAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADEXXXXXXXXXXXXXXXXXXMFLGLFTSGIQALIFATLAAAYIGESMEGHH 353
            TNDINTTVALALLTS+AYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADE                  MFLGLFTSGIQALIFATLAAAYIGESMEGHH
Sbjct:  131 TNDINTTVALALLTSVAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPSVVPIPVMFLGLFTSGIQALIFATLAAAYIGESMEGHH 247
[Close]
BLAST of DR908627 vs. ExPASy Swiss-Prot
Match: ATPI_NASOF (ATP synthase subunit a, chloroplastic OS=Nasturtium officinale GN=atpI PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.439e-47
Identity = 98/117 (83.76%), Postives = 99/117 (84.62%), Query Frame = 3 
Query:    3 TNDINTTVALALLTSIAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADEXXXXXXXXXXXXXXXXXXMFLGLFTSGIQALIFATLAAAYIGESMEGHH 353
            TNDINTTVALALLTS+AYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADE                  MFLGLFTSGIQALIFATLAAAYIGESMEGHH
Sbjct:  133 TNDINTTVALALLTSVAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPIPVMFLGLFTSGIQALIFATLAAAYIGESMEGHH 249
[Close]
BLAST of DR908627 vs. ExPASy Swiss-Prot
Match: ATPI_LOBMA (ATP synthase subunit a, chloroplastic OS=Lobularia maritima GN=atpI PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.439e-47
Identity = 98/117 (83.76%), Postives = 99/117 (84.62%), Query Frame = 3 
Query:    3 TNDINTTVALALLTSIAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADEXXXXXXXXXXXXXXXXXXMFLGLFTSGIQALIFATLAAAYIGESMEGHH 353
            TNDINTTVALALLTS+AYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADE                  MFLGLFTSGIQALIFATLAAAYIGESMEGHH
Sbjct:  133 TNDINTTVALALLTSVAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPIPVMFLGLFTSGIQALIFATLAAAYIGESMEGHH 249
The following BLAST results are available for this feature:
BLAST of DR908627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 184
Match NameE-valueIdentityDescription
ATPI_MANES1.102e-4784.62ATP synthase subunit a, chloroplastic OS=Manihot e... [more]
ATPI_CITSI1.102e-4784.62ATP synthase subunit a, chloroplastic OS=Citrus si... [more]
ATPI_OLIPU1.439e-4783.76ATP synthase subunit a, chloroplastic OS=Olimarabi... [more]
ATPI_OENPA1.439e-4783.76ATP synthase subunit a, chloroplastic OS=Oenothera... [more]
ATPI_OENGL1.439e-4783.76ATP synthase subunit a, chloroplastic OS=Oenothera... [more]
ATPI_OENEH1.439e-4783.76ATP synthase subunit a, chloroplastic OS=Oenothera... [more]
ATPI_OENBI1.439e-4783.76ATP synthase subunit a, chloroplastic OS=Oenothera... [more]
ATPI_OENAR1.439e-4783.76ATP synthase subunit a, chloroplastic OS=Oenothera... [more]
ATPI_NASOF1.439e-4783.76ATP synthase subunit a, chloroplastic OS=Nasturtiu... [more]
ATPI_LOBMA1.439e-4783.76ATP synthase subunit a, chloroplastic OS=Lobularia... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16755 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-33_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908627 ID=DR908627; Name=DR908627; organism=Citrus sinensis; type=EST; length=604bp
CCACGAATGATATAAATACTACCGTTGCTTTAGCTTTGCTCACGTCAATA
GCATACTTCTATGCGGGTCTTTCCAAAAAGGGATTAGGCTATTTCAGTAA
ATACATTCAACCGACTCCAATTCTTTTACCCATTAACATTTTAGAAGATT
TCACAAAACCTCTATCACTTAGTTTTCGACTTTTTGGGAATATATTAGCC
GATGAATTAGTAGTTGTTGTTCTTGTTTCTTTAGTACCTTTAGTGGTTCC
TATACCCGTCATGTTCCTTGGATTATTTACAAGCGGTATTCAAGCTCTTA
TTTTTGCAACTTTAGCTGCGGCTTATATAGGCGAATCTATGGAGGGACAT
CATTGACTCGTTTTCGAAATAGTCTTTTTTTGTAGCTTAGAACAAAGGCA
ATGGATGCGTAACTCAAGATAATCTACTTATACTTCTACTTAGGAAAAAT
ACATATCCAAACATAAATCTACAAATACCGCATATACGATCAAGAGTCGT
AGAAAAAAAATTACGATATTGGGGAATTGTAGGAAAGAGATCTAAAGGAT
CTTTTTCCTCAAATTCCTCTTTGGCCTTATTATATCATCCCCCCCTCTCC
CCGC
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