DR908625
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DR908625 vs. ExPASy Swiss-Prot
Match: SHR_ARATH (Protein SHORT-ROOT OS=Arabidopsis thaliana GN=SHR PE=1 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.003e-32 Identity = 69/184 (37.50%), Postives = 99/184 (53.80%), Query Frame = 2 Query: 98 SNGAILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPH-------XXXXXXXXXXXXXXXMKEIGQRMGEVC*VNGCAL*IQSDNWIEPLS*AHKGDTRCQ----RR*SCRGELYRCLEKSCCKERGAVIQMFQSLKPKVVTIVEEEADLTSSRY-----DFVKCFEECLKFYTLYFE 601 +NGAILEA+DGE K+HI+D+S+T CTQWPTLLEALATR+D+TPH MKEIG RM + + G + + LS + + +C G ++ + R AVI F+ L+P++VT+VEEEADL +F++ F ECL+++ + FE Sbjct: 242 ANGAILEAVDGEAKIHIVDISSTFCTQWPTLLEALATRSDDTPHLRLTTVVVANKFVNDQTASHRMMKEIGNRMEKFARLMGVPFKFNIIHHVGDLSEFDLNELDVKPDEVLAINCVGAMHGIASRG--SPRDAVISSFRRLRPRIVTVVEEEADLVGEEEGGFDDEFLRGFGECLRWFRVCFE 423 HSP 2 Score: 51.2174 bits (121), Expect = 1.003e-32 Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 1 Query: 1 SVAEKSHSFDSARKLILKFQEVSPWTTFGHVA 96 + EK+ SF+S RK +LKFQEVSPW TFGHVA Sbjct: 210 AATEKTCSFESTRKTVLKFQEVSPWATFGHVA 241
BLAST of DR908625 vs. ExPASy Swiss-Prot
Match: SHR2_ORYSI (Protein SHORT-ROOT 2 OS=Oryza sativa subsp. indica GN=SHR2 PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.916e-24 Identity = 58/173 (33.53%), Postives = 86/173 (49.71%), Query Frame = 2 Query: 134 TKLHIIDMSNTLCTQWPTLLEALATR-NDETPH----XXXXXXXXXXXXXXXMKEIGQRMGEVC*VNGCAL*IQSDNWIEPLS*AHKGDTRCQRR*SCRGELYRCLE--KSCCKERGAVIQMFQSLKPKVVTIVEEEADLTSSRYD----------FVKCFEECLKFYTLYFE 601 T+LHI+D+SNT CTQWPTLLEALATR +D+TPH M+EIGQR+ + + G ++ + L+ + + C+ + + R A + + L+P+VVT+VEEEADL + D FVK F E L+F++ Y + Sbjct: 316 TRLHILDLSNTFCTQWPTLLEALATRSSDDTPHLSITTVVPTAAPSAAAQRVMREIGQRLEKFARLMGVPFSFRAVHHAGDLADLDLAALDLREGGATAALAVNCVNALRGVARGRDAFVASLRRLEPRVVTVVEEEADLAAPEADASSEADTDAAFVKVFGEGLRFFSAYMD 488 HSP 2 Score: 46.9802 bits (110), Expect = 3.916e-24 Identity = 19/32 (59.38%), Postives = 26/32 (81.25%), Query Frame = 1 Query: 1 SVAEKSHSFDSARKLILKFQEVSPWTTFGHVA 96 + ++++ SFDS R+ LKFQE+SPWT FGHVA Sbjct: 253 TASDRNASFDSTRRTALKFQELSPWTPFGHVA 284
BLAST of DR908625 vs. ExPASy Swiss-Prot
Match: SHR2_ORYSJ (Protein SHORT-ROOT 2 OS=Oryza sativa subsp. japonica GN=SHR2 PE=1 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 5.095e-24 Identity = 58/173 (33.53%), Postives = 86/173 (49.71%), Query Frame = 2 Query: 134 TKLHIIDMSNTLCTQWPTLLEALATR-NDETPH----XXXXXXXXXXXXXXXMKEIGQRMGEVC*VNGCAL*IQSDNWIEPLS*AHKGDTRCQRR*SCRGELYRCLE--KSCCKERGAVIQMFQSLKPKVVTIVEEEADLTSSRYD----------FVKCFEECLKFYTLYFE 601 T+LHI+D+SNT CTQWPTLLEALATR +D+TPH M+EIGQR+ + + G ++ + L+ + + C+ + + R A + + L+P+VVT+VEEEADL + D FVK F E L+F++ Y + Sbjct: 316 TRLHILDLSNTFCTQWPTLLEALATRSSDDTPHLSITTVVPTAAPSAAAQRVMREIGQRLEKFARLMGVPFSFRAVHHSGDLADLDLAALDLREGGATAALAVNCVNALRGVARGRDAFVASLRRLEPRVVTVVEEEADLAAPEADASSEADTDAAFVKVFGEGLRFFSAYMD 488 HSP 2 Score: 46.9802 bits (110), Expect = 5.095e-24 Identity = 19/32 (59.38%), Postives = 26/32 (81.25%), Query Frame = 1 Query: 1 SVAEKSHSFDSARKLILKFQEVSPWTTFGHVA 96 + ++++ SFDS R+ LKFQE+SPWT FGHVA Sbjct: 253 TASDRNASFDSTRRTALKFQELSPWTPFGHVA 284
BLAST of DR908625 vs. ExPASy Swiss-Prot
Match: SHR1_ORYSJ (Protein SHORT-ROOT 1 OS=Oryza sativa subsp. japonica GN=SHR1 PE=1 SV=2) HSP 1 Score: 82.8037 bits (203), Expect = 7.090e-23 Identity = 70/204 (34.31%), Postives = 95/204 (46.57%), Query Frame = 2 Query: 98 SNGAILE-------ALDGET-KLHIIDMSNTLCTQWPTLLEALATRN-DETPH------XXXXXXXXXXXXXXXMKEIGQRMGEVC*VNGCAL*IQSDNWIEPLS-------*AHKGDTRCQRR*SCRGELYRCLEKSCCKERGAVIQMFQSLKPKVVTIVEEEADLTSSRYD--------------FVKCFEECLKFYTLYFE 601 +NGAILE A ET + HI+D+SNT CTQWPTLLEALATR+ DETPH M+EIGQRM + + G ++ + L+ +G +C L R + + R A + L P+VVT+VEEEADL +S D F+K F E L+F++ Y + Sbjct: 289 ANGAILESFLEVAAAASSETQRFHILDLSNTFCTQWPTLLEALATRSADETPHLSITTVVSAAPSAPTAAVQRVMREIGQRMEKFARLMGVPFRFRAVHHSGDLAELDLDALDLREGGATTALAVNCVNSL-RGVVPGRARRRDAFAASLRRLDPRVVTVVEEEADLVASDPDASSATEEGGDTEAAFLKVFGEGLRFFSAYMD 491 HSP 2 Score: 45.0542 bits (105), Expect = 7.090e-23 Identity = 17/32 (53.12%), Postives = 27/32 (84.38%), Query Frame = 1 Query: 1 SVAEKSHSFDSARKLILKFQEVSPWTTFGHVA 96 + ++++ SFDS R+ L+FQE+SPW++FGHVA Sbjct: 257 AASDRNTSFDSTRRTALRFQELSPWSSFGHVA 288
BLAST of DR908625 vs. ExPASy Swiss-Prot
Match: SHR1_ORYSI (Protein SHORT-ROOT 1 OS=Oryza sativa subsp. indica GN=SHR1 PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 7.090e-23 Identity = 70/204 (34.31%), Postives = 95/204 (46.57%), Query Frame = 2 Query: 98 SNGAILE-------ALDGET-KLHIIDMSNTLCTQWPTLLEALATRN-DETPH------XXXXXXXXXXXXXXXMKEIGQRMGEVC*VNGCAL*IQSDNWIEPLS-------*AHKGDTRCQRR*SCRGELYRCLEKSCCKERGAVIQMFQSLKPKVVTIVEEEADLTSSRYD--------------FVKCFEECLKFYTLYFE 601 +NGAILE A ET + HI+D+SNT CTQWPTLLEALATR+ DETPH M+EIGQRM + + G ++ + L+ +G +C L R + + R A + L P+VVT+VEEEADL +S D F+K F E L+F++ Y + Sbjct: 289 ANGAILESFLEVAAAASSETQRFHILDLSNTFCTQWPTLLEALATRSADETPHLSITTVVSAAPSAPTAAVQRVMREIGQRMEKFARLMGVPFRFRAVHHSGDLAELDLDALDLREGGATTALAVNCVNSL-RGVVPGRARRRDAFAASLRRLDPRVVTVVEEEADLVASDPDASSATEEGGDTEAAFLKVFGEGLRFFSAYMD 491 HSP 2 Score: 45.0542 bits (105), Expect = 7.090e-23 Identity = 17/32 (53.12%), Postives = 27/32 (84.38%), Query Frame = 1 Query: 1 SVAEKSHSFDSARKLILKFQEVSPWTTFGHVA 96 + ++++ SFDS R+ L+FQE+SPW++FGHVA Sbjct: 257 AASDRNTSFDSTRRTALRFQELSPWSSFGHVA 288 The following BLAST results are available for this feature:
BLAST of DR908625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DR908625 ID=DR908625; Name=DR908625; organism=Citrus sinensis; type=EST; length=604bpback to top |