DR908625

Overview
NameDR908625
Unique NameDR908625
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1395 contig Csv1_Contig1395:52..655. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908625 vs. ExPASy Swiss-Prot
Match: SHR_ARATH (Protein SHORT-ROOT OS=Arabidopsis thaliana GN=SHR PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.003e-32
Identity = 69/184 (37.50%), Postives = 99/184 (53.80%), Query Frame = 2
Query:   98 SNGAILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPH-------XXXXXXXXXXXXXXXMKEIGQRMGEVC*VNGCAL*IQSDNWIEPLS*AHKGDTRCQ----RR*SCRGELYRCLEKSCCKERGAVIQMFQSLKPKVVTIVEEEADLTSSRY-----DFVKCFEECLKFYTLYFE 601
            +NGAILEA+DGE K+HI+D+S+T CTQWPTLLEALATR+D+TPH                      MKEIG RM +   + G        + +  LS     +   +       +C G ++    +     R AVI  F+ L+P++VT+VEEEADL          +F++ F ECL+++ + FE
Sbjct:  242 ANGAILEAVDGEAKIHIVDISSTFCTQWPTLLEALATRSDDTPHLRLTTVVVANKFVNDQTASHRMMKEIGNRMEKFARLMGVPFKFNIIHHVGDLSEFDLNELDVKPDEVLAINCVGAMHGIASRG--SPRDAVISSFRRLRPRIVTVVEEEADLVGEEEGGFDDEFLRGFGECLRWFRVCFE 423          

HSP 2 Score: 51.2174 bits (121), Expect = 1.003e-32
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 1
Query:    1 SVAEKSHSFDSARKLILKFQEVSPWTTFGHVA 96
            +  EK+ SF+S RK +LKFQEVSPW TFGHVA
Sbjct:  210 AATEKTCSFESTRKTVLKFQEVSPWATFGHVA 241          
BLAST of DR908625 vs. ExPASy Swiss-Prot
Match: SHR2_ORYSI (Protein SHORT-ROOT 2 OS=Oryza sativa subsp. indica GN=SHR2 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.916e-24
Identity = 58/173 (33.53%), Postives = 86/173 (49.71%), Query Frame = 2
Query:  134 TKLHIIDMSNTLCTQWPTLLEALATR-NDETPH----XXXXXXXXXXXXXXXMKEIGQRMGEVC*VNGCAL*IQSDNWIEPLS*AHKGDTRCQRR*SCRGELYRCLE--KSCCKERGAVIQMFQSLKPKVVTIVEEEADLTSSRYD----------FVKCFEECLKFYTLYFE 601
            T+LHI+D+SNT CTQWPTLLEALATR +D+TPH                   M+EIGQR+ +   + G     ++ +    L+         +   +       C+   +   + R A +   + L+P+VVT+VEEEADL +   D          FVK F E L+F++ Y +
Sbjct:  316 TRLHILDLSNTFCTQWPTLLEALATRSSDDTPHLSITTVVPTAAPSAAAQRVMREIGQRLEKFARLMGVPFSFRAVHHAGDLADLDLAALDLREGGATAALAVNCVNALRGVARGRDAFVASLRRLEPRVVTVVEEEADLAAPEADASSEADTDAAFVKVFGEGLRFFSAYMD 488          

HSP 2 Score: 46.9802 bits (110), Expect = 3.916e-24
Identity = 19/32 (59.38%), Postives = 26/32 (81.25%), Query Frame = 1
Query:    1 SVAEKSHSFDSARKLILKFQEVSPWTTFGHVA 96
            + ++++ SFDS R+  LKFQE+SPWT FGHVA
Sbjct:  253 TASDRNASFDSTRRTALKFQELSPWTPFGHVA 284          
BLAST of DR908625 vs. ExPASy Swiss-Prot
Match: SHR2_ORYSJ (Protein SHORT-ROOT 2 OS=Oryza sativa subsp. japonica GN=SHR2 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.095e-24
Identity = 58/173 (33.53%), Postives = 86/173 (49.71%), Query Frame = 2
Query:  134 TKLHIIDMSNTLCTQWPTLLEALATR-NDETPH----XXXXXXXXXXXXXXXMKEIGQRMGEVC*VNGCAL*IQSDNWIEPLS*AHKGDTRCQRR*SCRGELYRCLE--KSCCKERGAVIQMFQSLKPKVVTIVEEEADLTSSRYD----------FVKCFEECLKFYTLYFE 601
            T+LHI+D+SNT CTQWPTLLEALATR +D+TPH                   M+EIGQR+ +   + G     ++ +    L+         +   +       C+   +   + R A +   + L+P+VVT+VEEEADL +   D          FVK F E L+F++ Y +
Sbjct:  316 TRLHILDLSNTFCTQWPTLLEALATRSSDDTPHLSITTVVPTAAPSAAAQRVMREIGQRLEKFARLMGVPFSFRAVHHSGDLADLDLAALDLREGGATAALAVNCVNALRGVARGRDAFVASLRRLEPRVVTVVEEEADLAAPEADASSEADTDAAFVKVFGEGLRFFSAYMD 488          

HSP 2 Score: 46.9802 bits (110), Expect = 5.095e-24
Identity = 19/32 (59.38%), Postives = 26/32 (81.25%), Query Frame = 1
Query:    1 SVAEKSHSFDSARKLILKFQEVSPWTTFGHVA 96
            + ++++ SFDS R+  LKFQE+SPWT FGHVA
Sbjct:  253 TASDRNASFDSTRRTALKFQELSPWTPFGHVA 284          
BLAST of DR908625 vs. ExPASy Swiss-Prot
Match: SHR1_ORYSJ (Protein SHORT-ROOT 1 OS=Oryza sativa subsp. japonica GN=SHR1 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 7.090e-23
Identity = 70/204 (34.31%), Postives = 95/204 (46.57%), Query Frame = 2
Query:   98 SNGAILE-------ALDGET-KLHIIDMSNTLCTQWPTLLEALATRN-DETPH------XXXXXXXXXXXXXXXMKEIGQRMGEVC*VNGCAL*IQSDNWIEPLS-------*AHKGDTRCQRR*SCRGELYRCLEKSCCKERGAVIQMFQSLKPKVVTIVEEEADLTSSRYD--------------FVKCFEECLKFYTLYFE 601
            +NGAILE       A   ET + HI+D+SNT CTQWPTLLEALATR+ DETPH                     M+EIGQRM +   + G     ++ +    L+          +G        +C   L R +     + R A     + L P+VVT+VEEEADL +S  D              F+K F E L+F++ Y +
Sbjct:  289 ANGAILESFLEVAAAASSETQRFHILDLSNTFCTQWPTLLEALATRSADETPHLSITTVVSAAPSAPTAAVQRVMREIGQRMEKFARLMGVPFRFRAVHHSGDLAELDLDALDLREGGATTALAVNCVNSL-RGVVPGRARRRDAFAASLRRLDPRVVTVVEEEADLVASDPDASSATEEGGDTEAAFLKVFGEGLRFFSAYMD 491          

HSP 2 Score: 45.0542 bits (105), Expect = 7.090e-23
Identity = 17/32 (53.12%), Postives = 27/32 (84.38%), Query Frame = 1
Query:    1 SVAEKSHSFDSARKLILKFQEVSPWTTFGHVA 96
            + ++++ SFDS R+  L+FQE+SPW++FGHVA
Sbjct:  257 AASDRNTSFDSTRRTALRFQELSPWSSFGHVA 288          
BLAST of DR908625 vs. ExPASy Swiss-Prot
Match: SHR1_ORYSI (Protein SHORT-ROOT 1 OS=Oryza sativa subsp. indica GN=SHR1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 7.090e-23
Identity = 70/204 (34.31%), Postives = 95/204 (46.57%), Query Frame = 2
Query:   98 SNGAILE-------ALDGET-KLHIIDMSNTLCTQWPTLLEALATRN-DETPH------XXXXXXXXXXXXXXXMKEIGQRMGEVC*VNGCAL*IQSDNWIEPLS-------*AHKGDTRCQRR*SCRGELYRCLEKSCCKERGAVIQMFQSLKPKVVTIVEEEADLTSSRYD--------------FVKCFEECLKFYTLYFE 601
            +NGAILE       A   ET + HI+D+SNT CTQWPTLLEALATR+ DETPH                     M+EIGQRM +   + G     ++ +    L+          +G        +C   L R +     + R A     + L P+VVT+VEEEADL +S  D              F+K F E L+F++ Y +
Sbjct:  289 ANGAILESFLEVAAAASSETQRFHILDLSNTFCTQWPTLLEALATRSADETPHLSITTVVSAAPSAPTAAVQRVMREIGQRMEKFARLMGVPFRFRAVHHSGDLAELDLDALDLREGGATTALAVNCVNSL-RGVVPGRARRRDAFAASLRRLDPRVVTVVEEEADLVASDPDASSATEEGGDTEAAFLKVFGEGLRFFSAYMD 491          

HSP 2 Score: 45.0542 bits (105), Expect = 7.090e-23
Identity = 17/32 (53.12%), Postives = 27/32 (84.38%), Query Frame = 1
Query:    1 SVAEKSHSFDSARKLILKFQEVSPWTTFGHVA 96
            + ++++ SFDS R+  L+FQE+SPW++FGHVA
Sbjct:  257 AASDRNTSFDSTRRTALRFQELSPWSSFGHVA 288          
The following BLAST results are available for this feature:
BLAST of DR908625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SHR_ARATH1.003e-3237.50Protein SHORT-ROOT OS=Arabidopsis thaliana GN=SHR ... [more]
SHR2_ORYSI3.916e-2433.53Protein SHORT-ROOT 2 OS=Oryza sativa subsp. indica... [more]
SHR2_ORYSJ5.095e-2433.53Protein SHORT-ROOT 2 OS=Oryza sativa subsp. japoni... [more]
SHR1_ORYSJ7.090e-2334.31Protein SHORT-ROOT 1 OS=Oryza sativa subsp. japoni... [more]
SHR1_ORYSI7.090e-2334.31Protein SHORT-ROOT 1 OS=Oryza sativa subsp. indica... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16753 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-11_F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908625 ID=DR908625; Name=DR908625; organism=Citrus sinensis; type=EST; length=604bp
TCAGTTGCAGAAAAGAGCCACTCCTTTGATTCAGCTAGAAAATTGATTCT
CAAATTCCAAGAGGTAAGCCCTTGGACTACTTTTGGTCATGTAGCCTTCA
AACGGTGCAATTTTGGAAGCCTTGGATGGAGAGACCAAACTTCACATAAT
TGATATGAGCAACACACTTTGTACTCAATGGCCTACTTTATTAGAAGCTT
TGGCTACCAGAAATGATGAGACACCTCACTTGAAGCTCACTGTTGTGGTA
ACTGTTAGCCTTGTTAGATTGGTCATGAAGGAAATAGGTCAAAGGATGGG
AGAAGTTTGCTAGGTTAATGGGTGTGCCCTTTGAATTCAAAGTGATAACT
GGATTGAACCGCTTAGTTGAGCTCACAAAGGAGACACTAGGTGTCAAAGA
AGATGAAGCTGTCGCGGTGAATTGTATCGGTGCCTTGAGAAGAGTTGCTG
TAAGGAAAGAGGTGCTGTGATCCAAATGTTTCAATCCCTTAAGCCAAAAG
TTGTGACAATCGTTGAGGAAGAAGCTGATCTTACAAGCTCTAGATATGAC
TTTGTGAAGTGCTTTGAAGAGTGCCTTAAATTCTATACATTGTATTTTGA
GATG
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