CN189247

Overview
NameCN189247
Unique NameCN189247
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189247_ssr191 microsatellite CN189247_ssr191:191..202. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8490 contig Csv1_Contig8490:74..812. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN189247 vs. ExPASy Swiss-Prot
Match: PR1A1_ARATH (PRA1 family protein A1 OS=Arabidopsis thaliana GN=PRA1A1 PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.659e-68
Identity = 124/166 (74.70%), Postives = 136/166 (81.93%), Query Frame = 1 
Query:  223 MDWGNVTAEDLIDALREVDWSSPPRPLSEFFSRFTVPRSSAKWNSRLKCNLYYYRTNYFIMITVILGLGFLRRPVXXXXXXXXXXXXXFLNDSFAGTFNEKVTRTVRQFSPHLAAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTV 720
            MDWGNVT +DL DALREVDWSSPPRP SEFFSRFTVP+S  KW+SRLKCNLYYYRTNYFIMI VILGLG L RP+             FLNDSFAG+F+EK TRTVR+FSP LAAKMRPPLTPV RGRPS+KRAI++CG+PRWVFVL  S VSF LWY+S GLL V
Sbjct:    1 MDWGNVTVDDLFDALREVDWSSPPRPPSEFFSRFTVPKSVPKWDSRLKCNLYYYRTNYFIMIVVILGLGVLTRPLAIFAALLTALSLAFLNDSFAGSFSEKATRTVRRFSPQLAAKMRPPLTPVTRGRPSSKRAIHVCGQPRWVFVLTCSLVSFALWYISSGLLRV 166
[Close]
BLAST of CN189247 vs. ExPASy Swiss-Prot
Match: PR1A2_ARATH (PRA1 family protein A2 OS=Arabidopsis thaliana GN=PRA1A2 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.078e-59
Identity = 102/168 (60.71%), Postives = 126/168 (75.00%), Query Frame = 1 
Query:  223 MDWGNVTAEDLIDALREVDWSSPPRPLSEFFSRFTVPRSSAKWNSRLKCNLYYYRTNYFIMITVILGLGFLRRPVXXXXXXXXXXXXXFLNDSFAGTFNEKVTRTVRQFSPHLAAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLW 726
            MDW NV AED+I+ALREV+WS+PPR   EFFSRF  PRS +KW SRLKCNLYYYRTNYFI++  +LGL  + RP+             FLNDSFA +FNEK  RT+R FSPH+AAKMRPP  PVIRGR +A++ +Y+CG+PRWVFV+ F   S ++W+ SCGLL VL+
Sbjct:    1 MDWDNVAAEDVIEALREVEWSTPPRSFGEFFSRFAFPRSFSKWKSRLKCNLYYYRTNYFILVIFVLGLALVTRPLALVGAALTALSIAFLNDSFAASFNEKFIRTIRHFSPHMAAKMRPPHMPVIRGRSTARKTVYVCGKPRWVFVITFLTASLVMWFSSCGLLWVLY 168
[Close]
BLAST of CN189247 vs. ExPASy Swiss-Prot
Match: PR1A3_ARATH (PRA1 family protein A3 OS=Arabidopsis thaliana GN=PRA1A3 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.528e-58
Identity = 104/168 (61.90%), Postives = 126/168 (75.00%), Query Frame = 1 
Query:  223 MDWGNVTAEDLIDALREVDWSSPPRPLSEFFSRFTVPRSSAKWNSRLKCNLYYYRTNYFIMITVILGLGFLRRPVXXXXXXXXXXXXXFLNDSFAGTFNEKVTRTVRQFSPHLAAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLW 726
            MDW +V AED+I+ALREV+WS+ PR L+EFFSRF  PRS +KW SRLKCNLYYYRTNYFI+   +LGL  + RP+             FLNDSFA TFNEK+ RT+R FSPHLAAKMRPP  PVIRGR + ++ +YICG+PR VFVL+    SF+LW+ SCGLL VL+
Sbjct:    1 MDWDSVAAEDVIEALREVEWSASPRSLAEFFSRFAFPRSFSKWMSRLKCNLYYYRTNYFILFVFVLGLALITRPLAILGAALTALSLAFLNDSFAATFNEKMIRTIRHFSPHLAAKMRPPHMPVIRGRSATRKTVYICGQPRLVFVLLGLTASFVLWFTSCGLLWVLY 168
The following BLAST results are available for this feature:
BLAST of CN189247 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PR1A1_ARATH1.659e-6874.70PRA1 family protein A1 OS=Arabidopsis thaliana GN=... [more]
PR1A2_ARATH1.078e-5960.71PRA1 family protein A2 OS=Arabidopsis thaliana GN=... [more]
PR1A3_ARATH4.528e-5861.90PRA1 family protein A3 OS=Arabidopsis thaliana GN=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001I20_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001I20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189247 ID=CN189247; Name=CN189247; organism=Citrus sinensis; type=EST; length=739bp
GAGGGTCCCTTGCCGTTAAGTCATTCCCTGGCTCACTGCACAAGTCCCAT
TCAATTTAATTCTCTTCATCACATCGCAGGAAACCCACAGCCACAGCCTC
GACTCTTTCTTAATCTGCCTAGGGTTTCGCGGATCATTTTATTTTGCACA
AAATAAATCGTTTTCTAGGGTTTCGGAAGAGCGGAATATTATAATAATAA
TAACAATAGTAGTAATCAAGCGATGGATTGGGGAAACGTAACAGCAGAAG
ATCTTATCGACGCGCTTCGTGAAGTTGACTGGTCGTCTCCACCGCGTCCT
CTCTCCGAGTTCTTCTCCAGGTTCACCGTTCCGAGATCCTCCGCCAAATG
GAACAGCCGATTGAAATGCAATCTTTACTACTACCGAACAAACTACTTTA
TCATGATTACTGTCATTCTTGGGTTGGGTTTCCTAAGGAGACCTGTTGCT
ATTATTGCTGCTCTTTTGACAGCCCTTAGTATTGCATTTCTCAATGACAG
CTTTGCAGGTACTTTCAATGAGAAGGTGACAAGAACTGTGAGGCAATTTT
CTCCACATCTAGCTGCAAAGATGAGGCCTCCTCTTACACCTGTTATTCGT
GGGCGCCCATCAGCGAAAAGAGCAATCTATATATGTGGTCGGCCTCGTTG
GGTGTTTGTCTTAATATTTTCTTGCGTAAGTTTCATCCTTTGGTATGTTT
CCTGTGGTCTTTTGACTGTTCTATGGGGCACTTGCTGTT
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