DR908617

Overview
NameDR908617
Unique NameDR908617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1627 contig Csv1_Contig1627:240..843. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908617 vs. ExPASy Swiss-Prot
Match: SF3_HELAN (Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 6.073e-70
Identity = 122/173 (70.52%), Postives = 142/173 (82.08%), Query Frame = 3
Query:    3 VYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPEKLV--ENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNYSQLESDLEKSQISEKPT 515
            VYLVDKL A+ RVYHKACFRCHHC  TLKLSNFNSF+GV+YCR HFDQLFKRTGSLEKSF+GTPK  KPE+    E ++A ++S+ F GTRDKC  C + VYP E+V V+G AYHR+CFKC HGGCTISPSNYIAHEG+LYCKHHHIQLF++KGNYSQLE +   +  +E  T
Sbjct:   18 VYLVDKLVANQRVYHKACFRCHHCNSTLKLSNFNSFDGVVYCRHHFDQLFKRTGSLEKSFDGTPKF-KPERTFSQETQSANRLSSFFEGTRDKCNACAKIVYPIERVKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLFKKKGNYSQLEVEETVAAPAESET 189          

HSP 2 Score: 75.0998 bits (183), Expect = 3.064e-13
Identity = 29/69 (42.03%), Postives = 44/69 (63.77%), Query Frame = 3
Query:  255 FVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGN 461
            F GT  KC  C++TVY  +K+  N   YH++CF+C H   T+  SN+ + +G +YC+HH  QLF+  G+
Sbjct:    4 FTGTTQKCTVCEKTVYLVDKLVANQRVYHKACFRCHHCNSTLKLSNFNSFDGVVYCRHHFDQLFKRTGS 72          
BLAST of DR908617 vs. ExPASy Swiss-Prot
Match: CSRP3_MOUSE (Cysteine and glycine-rich protein 3 OS=Mus musculus GN=Csrp3 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.866e-16
Identity = 50/182 (27.47%), Postives = 84/182 (46.15%), Query Frame = 3
Query:    3 VYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTG----------------SLEKSFEGTPKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG-NYSQLESDLEKSQ 497
            VY  +++  + R +HK CF C  C+  L  +   + E  +YC+  + + +   G                 L   F+ +PK   P +     N  K S KF G  +KC  C ++VY  EKV   G  +H++CF+C+  G ++  +N    +G+LYCK  + + F   G  +  L   +EK +
Sbjct:   17 VYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRRYGPKGIGFGQGAGCLSTDTGEHLGLQFQQSPK---PARAATTSNPSKFSAKF-GESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCKVCYAKNFGPTGIGFGGLTQQVEKKE 194          
BLAST of DR908617 vs. ExPASy Swiss-Prot
Match: CSRP3_HUMAN (Cysteine and glycine-rich protein 3 OS=Homo sapiens GN=CSRP3 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.866e-16
Identity = 50/182 (27.47%), Postives = 85/182 (46.70%), Query Frame = 3
Query:    3 VYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTG----------------SLEKSFEGTPKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG-NYSQLESDLEKSQ 497
            VY  +++  + R +HK CF C  C+  L  +   + E  +YC+  + + +   G                 L   F+ +PK   P + V   N  K + KF G  +KC  C ++VY  EKV   G  +H++CF+C+  G ++  +N    +G+LYCK  + + F   G  +  L   +EK +
Sbjct:   17 VYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRRYGPKGIGYGQGAGCLSTDTGEHLGLQFQQSPK---PARSVTTSNPSKFTAKF-GESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCKVCYAKNFGPTGIGFGGLTQQVEKKE 194          
BLAST of DR908617 vs. ExPASy Swiss-Prot
Match: CSRP3_RAT (Cysteine and glycine-rich protein 3 OS=Rattus norvegicus GN=Csrp3 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.125e-15
Identity = 50/182 (27.47%), Postives = 83/182 (45.60%), Query Frame = 3
Query:    3 VYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTG----------------SLEKSFEGTPKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG-NYSQLESDLEKSQ 497
            VY  +++  + R +HK CF C  C+  L  +   + E  +YC+  + + +   G                 L   F+ +PK   P +     N  K S KF G  +KC  C ++VY  EKV   G  +H++CF C+  G ++  +N    +G+LYCK  + + F   G  +  L   +EK +
Sbjct:   17 VYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRKYGPKGIGFGQGAGCLSTDTGEHLGLQFQQSPK---PARAATTSNPSKFSAKF-GESEKCPRCGKSVYAAEKVMGGGKPWHKTCFPCAICGKSLESTNVTDKDGELYCKVCYAKNFGPTGIGFGGLTHQVEKKE 194          
BLAST of DR908617 vs. ExPASy Swiss-Prot
Match: CSRP2_HUMAN (Cysteine and glycine-rich protein 2 OS=Homo sapiens GN=CSRP2 PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 4.275e-15
Identity = 44/164 (26.83%), Postives = 77/164 (46.95%), Query Frame = 3
Query:    3 VYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGT------------PKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG 458
            VY  +++  D R +H+ CF C  C+  L  +     +  +YC+  + + +   G       GT            P+ V+P +   N N  K + K+ G  +KC  C  +VY  EK+   G  +H++CF+C+  G ++  +     EG++YCK  + + F  KG
Sbjct:   17 VYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESVQPHRPTTNPNTSKFAQKYGGA-EKCSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKG 179          
BLAST of DR908617 vs. ExPASy Swiss-Prot
Match: CSRP2_BOVIN (Cysteine and glycine-rich protein 2 OS=Bos taurus GN=CSRP2 PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 4.275e-15
Identity = 44/164 (26.83%), Postives = 77/164 (46.95%), Query Frame = 3
Query:    3 VYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGT------------PKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG 458
            VY  +++  D R +H+ CF C  C+  L  +     +  +YC+  + + +   G       GT            P+ V+P +   N N  K + K+ G  +KC  C  +VY  EK+   G  +H++CF+C+  G ++  +     EG++YCK  + + F  KG
Sbjct:   17 VYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESVQPHRPTTNPNTSKFAQKYGGA-EKCSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKG 179          
BLAST of DR908617 vs. ExPASy Swiss-Prot
Match: CSRP2_RAT (Cysteine and glycine-rich protein 2 OS=Rattus norvegicus GN=Csrp2 PE=2 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 7.292e-15
Identity = 43/164 (26.22%), Postives = 76/164 (46.34%), Query Frame = 3
Query:    3 VYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGT------------PKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG 458
            VY  +++  D R +H+ CF C  C+  L  +     +  +YC+  + + +   G       GT            P+  +P +   N N  K + K+ G  +KC  C  +VY  EK+   G  +H++CF+C+  G ++  +     EG++YCK  + + F  KG
Sbjct:   17 VYHAEEVQCDGRTFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESAQPHRPTTNPNTSKFAQKYGGA-EKCSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKG 179          
BLAST of DR908617 vs. ExPASy Swiss-Prot
Match: CSRP2_MOUSE (Cysteine and glycine-rich protein 2 OS=Mus musculus GN=Csrp2 PE=2 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.244e-14
Identity = 43/164 (26.22%), Postives = 76/164 (46.34%), Query Frame = 3
Query:    3 VYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGT------------PKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG 458
            VY  +++  D R +H+ CF C  C+  L  +     +  +YC+  + + +   G       GT            P+  +P +   N N  K + K+ G  +KC  C  +VY  EK+   G  +H++CF+C+  G ++  +     EG++YCK  + + F  KG
Sbjct:   17 VYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESAQPHRPTTNPNTSKFAQKYGGA-EKCSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKG 179          
BLAST of DR908617 vs. ExPASy Swiss-Prot
Match: CSRP2_COTJA (Cysteine and glycine-rich protein 2 OS=Coturnix coturnix japonica GN=CSRP2 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.771e-14
Identity = 45/165 (27.27%), Postives = 76/165 (46.06%), Query Frame = 3
Query:    3 VYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPEKL-------------VENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG 458
            VY  +++  D R +H+ CF C  C+  L  +     +  +YC+  + + +   G       GT  + + E+L               N N  K + KF G  +KC  C  +VY  EKV   G  +H++CF+C+  G ++  +     EG++YCK  + + F  KG
Sbjct:   17 VYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESSPSPHRPTTNPNTSKFAQKFGGA-EKCSRCGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKG 180          
BLAST of DR908617 vs. ExPASy Swiss-Prot
Match: CSRP2_CHICK (Cysteine and glycine-rich protein 2 OS=Gallus gallus GN=CSRP2 PE=2 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 2.771e-14
Identity = 45/165 (27.27%), Postives = 76/165 (46.06%), Query Frame = 3
Query:    3 VYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPEKL-------------VENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG 458
            VY  +++  D R +H+ CF C  C+  L  +     +  +YC+  + + +   G       GT  + + E+L               N N  K + KF G  +KC  C  +VY  EKV   G  +H++CF+C+  G ++  +     EG++YCK  + + F  KG
Sbjct:   17 VYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESTPSPHRPTTNPNTSKFAQKFGGA-EKCSRCGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKG 180          
The following BLAST results are available for this feature:
BLAST of DR908617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
SF3_HELAN6.073e-7070.52Pollen-specific protein SF3 OS=Helianthus annuus G... [more]
CSRP3_MOUSE3.866e-1627.47Cysteine and glycine-rich protein 3 OS=Mus musculu... [more]
CSRP3_HUMAN3.866e-1627.47Cysteine and glycine-rich protein 3 OS=Homo sapien... [more]
CSRP3_RAT1.125e-1527.47Cysteine and glycine-rich protein 3 OS=Rattus norv... [more]
CSRP2_HUMAN4.275e-1526.83Cysteine and glycine-rich protein 2 OS=Homo sapien... [more]
CSRP2_BOVIN4.275e-1526.83Cysteine and glycine-rich protein 2 OS=Bos taurus ... [more]
CSRP2_RAT7.292e-1526.22Cysteine and glycine-rich protein 2 OS=Rattus norv... [more]
CSRP2_MOUSE1.244e-1426.22Cysteine and glycine-rich protein 2 OS=Mus musculu... [more]
CSRP2_COTJA2.771e-1427.27Cysteine and glycine-rich protein 2 OS=Coturnix co... [more]
CSRP2_CHICK2.771e-1427.27Cysteine and glycine-rich protein 2 OS=Gallus gall... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16745 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-13_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908617 ID=DR908617; Name=DR908617; organism=Citrus sinensis; type=EST; length=605bp
CTGTGTACCTTGTTGACAAGTTGACGGCCGATAATCGGGTCTATCACAAA
GCTTGCTTCCGGTGCCACCATTGCAAAGGAACCCTCAAGCTCAGTAACTT
CAATTCCTTTGAGGGGGTCCTGTATTGCAGGCCTCACTTTGATCAGCTCT
TCAAGAGAACTGGCAGCCTGGAGAAGAGTTTTGAAGGAACACCAAAGATT
GTGAAACCTGAAAAGCTCGTTGAAAATGAGAATGCACAGAAAGTCTCCAA
CAAGTTTGTGGGCACCAGAGATAAATGTGTGGGATGCGATAGGACTGTTT
ATCCAACTGAGAAGGTTTCTGTAAATGGCGCCGCATATCATAGGAGCTGC
TTCAAGTGCAGCCATGGAGGTTGCACCATCAGCCCATCAAATTATATTGC
CCATGAGGGGAAACTCTACTGCAAGCATCATCACATACAACTCTTCAGGG
AGAAAGGAAACTACAGCCAGCTTGAGAGTGATCTTGAGAAGAGTCAAATC
TCTGAGAAGCCAACTCCTGTCCAAATTGCTGCCGAATCATAACTTCCAAG
TGGATTTTCTTATTTGTAGTATTTTTGTGCGTAAATCGTATTAATTTCTT
AACTT
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