DR908616

Overview
NameDR908616
Unique NameDR908616
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4132 contig Csv1_Contig4132:354..958. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DR908616 vs. ExPASy Swiss-Prot
Match: DIM_PEA (Cell elongation protein diminuto OS=Pisum sativum GN=DIM PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.359e-53
Identity = 100/120 (83.33%), Postives = 107/120 (89.17%), Query Frame = 2 
Query:    2 QGDTSYAQMYTDVGVYYAPGPILRGEVFDGAEAVRKMEQWLIENGGFQPQYAVSELSEKNFWRMFDADLYEKCRKKYKAVGTFMSVYYKSKKGRKTEKEVQEAEQAQLEPAYAEVDQPID 361
            QGDT  AQM+TDVGVYYAPGP+LRGEVFDGAEAVRKME W+IEN  FQPQYAVSEL+EKNFWRMFDA LYE CR+KY AVGTFMSVYYK KKGRKTEKEV+EAEQA L+ AY EVDQP D
Sbjct:  448 QGDTQNAQMFTDVGVYYAPGPVLRGEVFDGAEAVRKMESWMIENHCFQPQYAVSELNEKNFWRMFDAGLYEHCRRKYGAVGTFMSVYYKCKKGRKTEKEVREAEQAHLDTAYPEVDQPPD 567
[Close]
BLAST of DR908616 vs. ExPASy Swiss-Prot
Match: DIM_ARATH (Cell elongation protein DIMINUTO OS=Arabidopsis thaliana GN=DIM PE=1 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 1.272e-51
Identity = 95/116 (81.90%), Postives = 106/116 (91.38%), Query Frame = 2 
Query:    2 QGDTSYAQMYTDVGVYYAPGPILRGEVFDGAEAVRKMEQWLIENGGFQPQYAVSELSEKNFWRMFDADLYEKCRKKYKAVGTFMSVYYKSKKGRKTEKEVQEAEQAQLEPAYAEVD 349
            QGDT  AQMYTDVGVYYAPG +LRGE FDG+EAVR+ME+WLIEN GFQPQYAVSEL EK+FWRMF+ +LYE+CRKKY+A+GTFMSVYYKSKKGRKTEKEV+EAEQA LE AYAE D
Sbjct:  446 QGDTEDAQMYTDVGVYYAPGCVLRGEEFDGSEAVRRMEKWLIENHGFQPQYAVSELDEKSFWRMFNGELYEECRKKYRAIGTFMSVYYKSKKGRKTEKEVREAEQAHLETAYAEAD 561
The following BLAST results are available for this feature:
BLAST of DR908616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
DIM_PEA1.359e-5383.33Cell elongation protein diminuto OS=Pisum sativum ... [more]
DIM_ARATH1.272e-5181.90Cell elongation protein DIMINUTO OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16744 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-12_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908616 ID=DR908616; Name=DR908616; organism=Citrus sinensis; type=EST; length=605bp
ACAGGGAGACACTTCTTACGCTCAGATGTATACAGATGTTGGGGTCTACT
ATGCACCAGGTCCTATCTTGAGGGGTGAAGTATTTGATGGTGCAGAAGCA
GTTCGTAAAATGGAGCAGTGGCTGATTGAGAATGGTGGGTTTCAGCCACA
GTATGCAGTGTCTGAACTGAGTGAAAAGAACTTTTGGAGGATGTTTGATG
CCGATCTGTATGAGAAATGCAGGAAAAAGTATAAAGCTGTGGGAACCTTC
ATGAGCGTGTACTACAAGTCCAAGAAAGGAAGGAAGACCGAAAAGGAGGT
GCAAGAAGCCGAACAAGCCCAACTTGAGCCTGCTTATGCAGAGGTTGACC
AGCCCATTGACTGATTTAAAACCGATCTTGGATTAATTGGTAGGATTTCT
TGCTTTCCCCACCTTTTCTTGTCTGTGTTTGTCTGTGTTATCCTTTGGAT
TGTAGTTTTTCCATTCATATGGTATCTACTGCCATTATTGAGTGTGTCGA
GTTTCTTAACAGATTAGCGTAAGACTATTTGGATGGTTTTATGACTTTGG
ACATGATTTAGGCTTAAGACTGGAATGTTTTATGGCAAAAAAAAAAAAAA
AAAAA
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