EY758003

Overview
NameEY758003
Unique NameEY758003
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length400
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY758003 vs. ExPASy Swiss-Prot
Match: SCAM4_ARATH (Secretory carrier-associated membrane protein 4 OS=Arabidopsis thaliana GN=SCAMP4 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.695e-15
Identity = 39/44 (88.64%), Postives = 42/44 (95.45%), Query Frame = 1
Query:   13 LAAIDVISDSLLAGIFYMIGFGLFVLESLLSLWVIQKIYMFFRG 144
            LAAIDVISDSLLAGIFY IGFGLF LESLLSLWV+QKIY++FRG
Sbjct:  219 LAAIDVISDSLLAGIFYFIGFGLFCLESLLSLWVLQKIYLYFRG 262          
BLAST of EY758003 vs. ExPASy Swiss-Prot
Match: SCAM1_ARATH (Secretory carrier-associated membrane protein 1 OS=Arabidopsis thaliana GN=SCAMP1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.105e-12
Identity = 30/47 (63.83%), Postives = 40/47 (85.11%), Query Frame = 1
Query:   13 LAAIDVISDSLLAGIFYMIGFGLFVLESLLSLWVIQKIYMFFRGTSE 153
            L AIDV+S ++L GIFY IGFG F LESL+S+WVIQ++YM+FRG+ +
Sbjct:  219 LPAIDVLSGNILVGIFYFIGFGFFCLESLVSIWVIQQVYMYFRGSGK 265          
BLAST of EY758003 vs. ExPASy Swiss-Prot
Match: SCAM1_ORYSJ (Secretory carrier-associated membrane protein 1 OS=Oryza sativa subsp. japonica GN=SCAMP1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.667e-12
Identity = 30/47 (63.83%), Postives = 40/47 (85.11%), Query Frame = 1
Query:   13 LAAIDVISDSLLAGIFYMIGFGLFVLESLLSLWVIQKIYMFFRGTSE 153
            L AID+IS + L GIFY +GFGLF +ESLLS+WVIQ++YM+FRG+ +
Sbjct:  243 LPAIDLISKNALVGIFYFVGFGLFCVESLLSIWVIQQVYMYFRGSGK 289          
BLAST of EY758003 vs. ExPASy Swiss-Prot
Match: SCAM1_ORYSI (Putative secretory carrier-associated membrane protein 1 OS=Oryza sativa subsp. indica GN=SCAMP1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.667e-12
Identity = 30/47 (63.83%), Postives = 40/47 (85.11%), Query Frame = 1
Query:   13 LAAIDVISDSLLAGIFYMIGFGLFVLESLLSLWVIQKIYMFFRGTSE 153
            L AID+IS + L GIFY +GFGLF +ESLLS+WVIQ++YM+FRG+ +
Sbjct:  243 LPAIDLISKNALVGIFYFVGFGLFCVESLLSIWVIQQVYMYFRGSGK 289          
BLAST of EY758003 vs. ExPASy Swiss-Prot
Match: SCAM_PEA (Secretory carrier-associated membrane protein OS=Pisum sativum GN=PSAM2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.485e-11
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 1
Query:   13 LAAIDVISDSLLAGIFYMIGFGLFVLESLLSLWVIQKIYMFFRGTSET 156
            L+AIDV+ D  L GIFY IGFG F LE+L+S+WVIQ++YM FRG  +T
Sbjct:  225 LSAIDVVGDYTLVGIFYFIGFGFFCLETLISIWVIQQVYMHFRGGGKT 272          
BLAST of EY758003 vs. ExPASy Swiss-Prot
Match: SCAM5_ARATH (Secretory carrier-associated membrane protein 5 OS=Arabidopsis thaliana GN=SCAMP5 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.485e-11
Identity = 30/47 (63.83%), Postives = 39/47 (82.98%), Query Frame = 1
Query:   13 LAAIDVISDSLLAGIFYMIGFGLFVLESLLSLWVIQKIYMFFRGTSE 153
            L AIDV+S   L GIFY IGFGLF LES++S+WVIQ++YM+FRG+ +
Sbjct:  228 LPAIDVLSAQALVGIFYFIGFGLFCLESVVSIWVIQQVYMYFRGSGK 274          
BLAST of EY758003 vs. ExPASy Swiss-Prot
Match: SCAM5_ORYSJ (Secretory carrier-associated membrane protein 5 OS=Oryza sativa subsp. japonica GN=SCAMP5 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.309e-11
Identity = 28/44 (63.64%), Postives = 36/44 (81.82%), Query Frame = 1
Query:   13 LAAIDVISDSLLAGIFYMIGFGLFVLESLLSLWVIQKIYMFFRG 144
            LAAID  SD  + GIFY +GF LF LE+L+S+WV+QK+YM+FRG
Sbjct:  236 LAAIDTFSDHAIVGIFYFVGFALFCLETLVSIWVLQKVYMYFRG 279          
The following BLAST results are available for this feature:
BLAST of EY758003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SCAM4_ARATH1.695e-1588.64Secretory carrier-associated membrane protein 4 OS... [more]
SCAM1_ARATH5.105e-1263.83Secretory carrier-associated membrane protein 1 OS... [more]
SCAM1_ORYSJ6.667e-1263.83Secretory carrier-associated membrane protein 1 OS... [more]
SCAM1_ORYSI6.667e-1263.83Putative secretory carrier-associated membrane pro... [more]
SCAM_PEA1.485e-1162.50Secretory carrier-associated membrane protein OS=P... [more]
SCAM5_ARATH1.485e-1163.83Secretory carrier-associated membrane protein 5 OS... [more]
SCAM5_ORYSJ3.309e-1163.64Secretory carrier-associated membrane protein 5 OS... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-030-A11-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY758003 ID=EY758003; Name=EY758003; organism=Citrus sinensis; type=EST; length=400bp
CCACGCGTCCGCCTAGCGGCTATCGATGTCATTTCTGATTCTCTATTGGC
TGGGATCTTTTACATGATTGGATTTGGCTTGTTCGTCTTGGAGTCTCTTC
TAAGCTTATGGGTTATTCAGAAAATTTACATGTTTTTCAGGGGAACAAGT
GAGACATGATGCTGGGGTCTTTTTTCGAGTTTGAAATTTTAGCACTGCTT
GCTGCTTTGGAGGGTTGTTTAATATATTCTTCCACCTTCGATTTATGTTC
ATTATTTCTTTGTCCCGTTAGTTATATGGTTTTTTTCCTTCAATCCTTTG
TTCTTTTTACTCATTTTCTTCTAGGTGAAAGACTGTACGAGTAGTTGATA
CAATAAGTTTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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