EY728625

Overview
NameEY728625
Unique NameEY728625
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY728625_ssr94 microsatellite EY728625_ssr94:94..103. BLAST: Citrus ESTs to Prunus persica proteins V1
EY728625_ssr374 microsatellite EY728625_ssr374:374..388. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY728625 vs. ExPASy Swiss-Prot
Match: Y4213_ARATH (UPF0480 protein At4g32130 OS=Arabidopsis thaliana GN=At4g32130 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.145e-25
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 2 
Query:  515 AGTHLIEVAAIGYFFSPVRVDVSARHPGKVQAALTETRRGLNELVLEQLREEQYYEIREPFSIMSLVKS 721
            AGTHLIEV A+GYFFSPVRVDVSARH GKVQA LTETRR L ELVLE LR EQYYE+REPFS+MS+VKS
Sbjct:   83 AGTHLIEVYALGYFFSPVRVDVSARHRGKVQATLTETRRSLTELVLEPLRAEQYYEMREPFSVMSIVKS 151
The following BLAST results are available for this feature:
BLAST of EY728625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4213_ARATH1.145e-2584.06UPF0480 protein At4g32130 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-006-D05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728625 ID=EY728625; Name=EY728625; organism=Citrus sinensis; type=EST; length=793bp
CACGCGTCCGCTCGATTCCACACAAAACTCCGTCGACATGGCGTCCATAA
TCAGATCCAAATCGGTTCTCTCAGTATTTTTCATAAATTTATTTCTCTCT
CTCGTCTCTTCGGCCGTTGCAGTTTCGAGCGGGTCTGGTGATGGCTTCAG
CATCAGTGGCCGTGTCAAACTTCCCGGTATGAGTTTGAAAGCATTTGGCT
CTCCTGGAGGAAAAGCATCGAATGTGAAAGTTGTACTCAATGGTGGCGAA
CATGTGACATTTCTGAGGCCCGATGGATATTTTTCATTGTATCCTACTAA
TTATATTTTCTCATGTTCTTTTCTTGTTCATTCAGTCAAAAATTCATTTG
TTCTATTTATTTTACCCATTTCGTCTTCTTCTTCTTCTTTTTTTTTTTTT
TCAATACATTCCTACATGTAGATTGTTTATTTCCCAATGATTTTATGGAA
GATGGGAAAAGAAGTTTTCATTTTTTAATTCCTTGATTTGTCTGCATAAA
GCCAGAACATGTCGGCAGGGACTCATTTAATTGAAGTGGCTGCAATTGGT
TATTTCTTTTCTCCGGTCCGGGTTGATGTTAGTGCCAGACACCCAGGCAA
GGTTCAGGCAGCATTGACGGAAACCAGGAGGGGTCTGAATGAATTGGTTT
TAGAGCAATTGAGAGAGGAGCAATATTACGAGATTAGAGAACCTTTTTCC
ATAATGTCTCTTGTGAAAAGCCCAATGGGTCTCATGATGGGATTAATGCT
ANTGGTTGTGTTCCTTATGCCCTAATTAATGGAAAATATGAAT
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