EY720569

Overview
NameEY720569
Unique NameEY720569
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY720569 vs. ExPASy Swiss-Prot
Match: RSBQ_BACSU (Sigma factor sigB regulation protein rsbQ OS=Bacillus subtilis GN=rsbQ PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.538e-34
Identity = 73/162 (45.06%), Postives = 98/162 (60.49%), Query Frame = 2 
Query:  131 EFLLEALNVRVVGQGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDPTNYDFQRYATLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGGSPRFTND-GNYIGGIDPAHMEEVCRRMESNYESWVASFVPMAL 613
            E +L   +V+V G G++ I+F+ GFG DQSVW+ V P+F   +RVI FD + SG  D   YD  RY TLDGY  D+L   +AL++    FVGHSV A+IG+LA+I RP LFS L+++G SP + ND   Y GG +   +  +   ME NY  W   F    L
Sbjct:    3 EAILSRNHVKVKGSGKASIMFAPGFGCDQSVWNAVAPAFEEDHRVILFDYVGSGHSDLRAYDLNRYQTLDGYAQDVLDVCEALDLKETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLNDPPEYYGGFEEEQLLGLLEMMEKNYIGWATVFAATVL 164
The following BLAST results are available for this feature:
BLAST of EY720569 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RSBQ_BACSU5.538e-3445.06Sigma factor sigB regulation protein rsbQ OS=Bacil... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-703-011-C09-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720569 ID=EY720569; Name=EY720569; organism=Citrus sinensis; type=EST; length=831bp
CCACGCGTCCGCAACAATCAATATTAATTTCTTTCTAATCAAGTAATATA
TTTTCAATATTAATTTCGTTCACTCATAAATTAATTTTAATAAATTTGCT
ATTAAAATGGCCAACTACAATAACCGTGGCGAATTTCTCTTGGAAGCACT
AAATGTTCGAGTAGTAGGTCAAGGGCAGTCAATCATCGTGTTTTCCCACG
GATTTGGGTCTGACCAATCCGTATGGAGTCGCGTTATCCCTAGTTTCACC
CGTGCTTATCGTGTAATCAGCTTTGACCTAATGTGCTCAGGAAGCTGCGA
CCCAACAAATTATGATTTCCAAAGATACGCCACTCTTGATGGTTACGTTG
ATGACTTGCTCAGCTTTCTCGACGCCCTTGAAATTGATCGTTGCGCCTTT
GTTGGTCATTCAGTATCGGCTATGATTGGTCTCTTAGCCGCCATTCACCG
TCCCAACCTTTTCTCAAGACTCATTCTCATTGGCGGTTCTCCAAGGTTCA
CGAATGATGGGAATTATATTGGGGGTATTGATCCAGCTCACATGGAAGAA
GTGTGCCGAAGAATGGAGAGCAATTATGAATCCTGGGTCGCAAGCTTTGT
ACCAATGGCACTTGGTGCGGACGTGGCTGACATGCCTCCCCAGTAATTCC
GCAGGATTTTGTCCACCATGAGGCCTGCACTTCCCTTTCTCGTCGCACCA
ACAGGGTTGGCCACCGAACCTGGGGCCGTGCTGCGCCTGTGTAAGGTTCC
CCGCTTGCCTAGTCCGGATCTCTTGTGGTGTGTGGGATCTGCTGTTTTTT
GGGAATGTTATGGCATGAGCAGTGGGTAGTC
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