EY756671

Overview
NameEY756671
Unique NameEY756671
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length524
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756671 vs. ExPASy Swiss-Prot
Match: GMD1_ARATH (GDP-mannose 4,6 dehydratase 1 OS=Arabidopsis thaliana GN=GMD1 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.871e-44
Identity = 83/96 (86.46%), Postives = 93/96 (96.88%), Query Frame = 3
Query:    3 VVATEESHTVEEFLEVAFGYVGLNWKDHVVIDKRYFRPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVDEDIELAKREKVLVDAGYMDAQQQP 290
            VVATEESHTV+EFL+V+FGYVGLNWKDHV IDKRYFRP EVDNLKGD+SKA+++LGWKP+VGFE+LVKMMVDED+ELAKREKVL DAGYMDAQQQP
Sbjct:  266 VVATEESHTVKEFLDVSFGYVGLNWKDHVEIDKRYFRPTEVDNLKGDASKAKEMLGWKPKVGFEKLVKMMVDEDLELAKREKVLADAGYMDAQQQP 361          
BLAST of EY756671 vs. ExPASy Swiss-Prot
Match: GMD2_ARATH (GDP-mannose 4,6 dehydratase 2 OS=Arabidopsis thaliana GN=MUR1 PE=1 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 3.529e-43
Identity = 81/96 (84.38%), Postives = 94/96 (97.92%), Query Frame = 3
Query:    3 VVATEESHTVEEFLEVAFGYVGLNWKDHVVIDKRYFRPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVDEDIELAKREKVLVDAGYMDAQQQP 290
            VVATEE HTVEEFL+V+FGY+GLNWKD+V ID+RYFRPAEVDNL+GD+SKA++VLGWKP+VGFE+LVKMMVDED+ELAKREKVLVDAGYMDA+QQP
Sbjct:  278 VVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKAKEVLGWKPQVGFEKLVKMMVDEDLELAKREKVLVDAGYMDAKQQP 373          
BLAST of EY756671 vs. ExPASy Swiss-Prot
Match: GM4D_PSEAE (GDP-mannose 4,6-dehydratase OS=Pseudomonas aeruginosa GN=gca PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 9.677e-17
Identity = 39/81 (48.15%), Postives = 59/81 (72.84%), Query Frame = 3
Query:    3 VVATEESHTVEEFLEVAFGYVGLNWKDHVVIDKRYFRPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVDEDIELAKRE 245
            VVAT  + TV +  ++AF +VGL+++D + ID  +FRPAEVD L G+ +KA++VLGWKPR   ++L++MMV+ D+    RE
Sbjct:  243 VVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSLDELIRMMVEADLRRVSRE 323          
BLAST of EY756671 vs. ExPASy Swiss-Prot
Match: GMDS_MOUSE (GDP-mannose 4,6 dehydratase OS=Mus musculus GN=Gmds PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.066e-15
Identity = 42/96 (43.75%), Postives = 60/96 (62.50%), Query Frame = 3
Query:    3 VVATEESHTVEEFLEVAFGYVG--LNW---------------KDHVVIDKRYFRPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVDEDIELAK 239
            V+AT E H+V EF+E +F ++G  + W               K HV +D +Y+RP EVD L+GD SKA++ L WKPRV F++LV+ MV  D+EL +
Sbjct:  272 VIATGEVHSVREFVEKSFMHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCSKAQQKLNWKPRVAFDELVREMVQADVELMR 367          
BLAST of EY756671 vs. ExPASy Swiss-Prot
Match: GMDS_CRIGR (GDP-mannose 4,6 dehydratase OS=Cricetulus griseus GN=GMDS PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.066e-15
Identity = 42/96 (43.75%), Postives = 60/96 (62.50%), Query Frame = 3
Query:    3 VVATEESHTVEEFLEVAFGYVG--LNW---------------KDHVVIDKRYFRPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVDEDIELAK 239
            V+AT E H+V EF+E +F ++G  + W               K HV +D +Y+RP EVD L+GD SKA++ L WKPRV F++LV+ MV  D+EL +
Sbjct:  272 VIATGEVHSVREFVEKSFMHIGKTIVWEGKNENEVGRCKETGKIHVTVDLKYYRPTEVDFLQGDCSKAQQKLNWKPRVAFDELVREMVQADVELMR 367          
BLAST of EY756671 vs. ExPASy Swiss-Prot
Match: GMDS_HUMAN (GDP-mannose 4,6 dehydratase OS=Homo sapiens GN=GMDS PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.183e-14
Identity = 41/96 (42.71%), Postives = 60/96 (62.50%), Query Frame = 3
Query:    3 VVATEESHTVEEFLEVAFGYVG--LNW---------------KDHVVIDKRYFRPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVDEDIELAK 239
            V+AT E H+V EF+E +F ++G  + W               K HV +D +Y+RP EVD L+GD +KA++ L WKPRV F++LV+ MV  D+EL +
Sbjct:  272 VIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVELMR 367          
BLAST of EY756671 vs. ExPASy Swiss-Prot
Match: GMDS_DROME (GDP-mannose 4,6 dehydratase OS=Drosophila melanogaster GN=Gmd PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 6.491e-13
Identity = 40/100 (40.00%), Postives = 58/100 (58.00%), Query Frame = 3
Query:    3 VVATEESHTVEEFLEVAFGYVG--LNWKD---------------HVVIDKRYFRPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVDEDIELAKREKV 251
            V+AT E+H+V EF+E AF ++   + WK                 V I+ +YFRP EVD L+GD+SKA + L W P+V F +LV  M+  DIEL ++  +
Sbjct:  295 VIATGETHSVREFVEAAFKHIDREITWKGKGVDEVGVENGTGIVRVRINPKYFRPTEVDLLQGDASKANRELNWTPKVTFVELVSDMMKADIELMRKNPI 394          
BLAST of EY756671 vs. ExPASy Swiss-Prot
Match: GMDS_DICDI (GDP-mannose 4,6 dehydratase OS=Dictyostelium discoideum GN=gmd PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.224e-11
Identity = 39/96 (40.62%), Postives = 56/96 (58.33%), Query Frame = 3
Query:    3 VVATEESHTVEEFLEVAF-----------------GYVGLNWKDHVVIDKRYFRPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVDEDIELAK 239
            V+AT E+H+V EF+E +F                 GY     K +V ID++Y+RP EVD L G+ +KA+K+L W+ +  F +LVK MV +DIE  K
Sbjct:  255 VIATGETHSVREFVEKSFKEIDIIIKWRGEAEKEEGYCEKTGKVYVKIDEKYYRPTEVDLLLGNPNKAKKLLQWQIKTSFGELVKEMVAKDIEYIK 350          
BLAST of EY756671 vs. ExPASy Swiss-Prot
Match: GM4D_SHIFL (GDP-mannose 4,6-dehydratase OS=Shigella flexneri GN=gmd PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.727e-11
Identity = 37/116 (31.90%), Postives = 57/116 (49.14%), Query Frame = 3
Query:    3 VVATEESHTVEEFLEVAFGYVGLNWKDH---------------------------VVIDKRYFRPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVDEDIELAKREKVLVDAGY 269
            V+AT   ++V +F+E+A   +G+  +                             + +D RYFRPAEV+ L GD +KA + LGWKP +   ++V  MV  D+E AK+  +L   GY
Sbjct:  250 VIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKKHSLLKSHGY 365          
BLAST of EY756671 vs. ExPASy Swiss-Prot
Match: GM4D_ECOLI (GDP-mannose 4,6-dehydratase OS=Escherichia coli (strain K12) GN=gmd PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.727e-11
Identity = 37/116 (31.90%), Postives = 57/116 (49.14%), Query Frame = 3
Query:    3 VVATEESHTVEEFLEVAFGYVGLNWKDH---------------------------VVIDKRYFRPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVDEDIELAKREKVLVDAGY 269
            V+AT   ++V +F+E+A   +G+  +                             + +D RYFRPAEV+ L GD +KA + LGWKP +   ++V  MV  D+E AK+  +L   GY
Sbjct:  250 VIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKKHSLLKSHGY 365          
The following BLAST results are available for this feature:
BLAST of EY756671 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
GMD1_ARATH1.871e-4486.46GDP-mannose 4,6 dehydratase 1 OS=Arabidopsis thali... [more]
GMD2_ARATH3.529e-4384.38GDP-mannose 4,6 dehydratase 2 OS=Arabidopsis thali... [more]
GM4D_PSEAE9.677e-1748.15GDP-mannose 4,6-dehydratase OS=Pseudomonas aerugin... [more]
GMDS_MOUSE4.066e-1543.75GDP-mannose 4,6 dehydratase OS=Mus musculus GN=Gmd... [more]
GMDS_CRIGR4.066e-1543.75GDP-mannose 4,6 dehydratase OS=Cricetulus griseus ... [more]
GMDS_HUMAN1.183e-1442.71GDP-mannose 4,6 dehydratase OS=Homo sapiens GN=GMD... [more]
GMDS_DROME6.491e-1340.00GDP-mannose 4,6 dehydratase OS=Drosophila melanoga... [more]
GMDS_DICDI1.224e-1140.63GDP-mannose 4,6 dehydratase OS=Dictyostelium disco... [more]
GM4D_SHIFL2.727e-1131.90GDP-mannose 4,6-dehydratase OS=Shigella flexneri G... [more]
GM4D_ECOLI2.727e-1131.90GDP-mannose 4,6-dehydratase OS=Escherichia coli (s... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-011-D01-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756671 ID=EY756671; Name=EY756671; organism=Citrus sinensis; type=EST; length=524bp
ATGTGGTGGCGACGGAGGAGTCGCATACAGTGGAGGAGTTTTTGGAGGTC
GCGTTTGGGTATGTGGGGTTGAATTGGAAGGATCATGTGGTGATCGATAA
GAGGTATTTTAGGCCAGCTGAGGTTGATAATTTGAAGGGGGATTCAAGCA
AGGCCAGGAAAGTGCTTGGCTGGAAGCCTCGAGTTGGGTTTGAGCAGTTG
GTGAAGATGATGGTTGATGAAGATATTGAATTGGCTAAAAGAGAGAAAGT
TCTTGTTGATGCTGGATACATGGACGCTCAGCAGCAGCCTTAGATTTGGT
TTTTACCTTCTTGTATTATTTTTAAGCTAATGCTTGACAGCTTGAGTGCT
TTCTAGGGTTTGATTTTTGAGGAGAATATTTGTTTAGTTCAAGTGTTATT
TCATGTTTTATGTCGTTTGAATCTTTGTAACTTCATTCGTTAATTTCAGG
AAGATGAAATTGCTATTTAGCATCAAAAANNNNNNNNNANNNNNAAAAAN
NNAAAAAAANNNNNNNNAAAAAAA
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