CX286884

Overview
NameCX286884
Unique NameCX286884
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length462
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286884 vs. ExPASy Swiss-Prot
Match: ALA2_HORVU (Alanine aminotransferase 2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 1.990e-48
Identity = 88/150 (58.67%), Postives = 120/150 (80.00%), Query Frame = 3
Query:    3 VLVPVPQYPLYSATISLLGGSLVPYYLEETANWGLDLNDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGPPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMT 452
            +LVP+PQYPLYSA+I+L GG+LVPYYL E+  WGL+ +D+++ +  ARS+GI VRA+V+INPGNPTGQ L+E N  +I++FC  E LVLL DEVYQ+NIY D + F S KK++  +G    +++ LVS+ +VSKGY+GECG+RGGYFE+T
Sbjct:  167 ILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYG-EEDLPLVSYQSVSKGYYGECGKRGGYFEIT 315          
BLAST of CX286884 vs. ExPASy Swiss-Prot
Match: ALA2_PANMI (Alanine aminotransferase 2 OS=Panicum miliaceum PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 3.395e-48
Identity = 90/150 (60.00%), Postives = 118/150 (78.67%), Query Frame = 3
Query:    3 VLVPVPQYPLYSATISLLGGSLVPYYLEETANWGLDLNDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGPPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMT 452
            +L P+PQYPLYSA+I+L GG+LVPYYL+E   WGL+++DL++ +  ARSKGI VRA+V+INPGNPTGQ L+E N  +I+RFC  E LVLL DEVYQ+NIY D++ F S KK+   +G     ++ LVSF +VSKGY+GECG+RGGY E+T
Sbjct:  167 ILCPIPQYPLYSASIALHGGTLVPYYLDEKTGWGLEISDLKKQLEDARSKGIDVRALVVINPGNPTGQVLAEDNQCDIVRFCKNEGLVLLADEVYQENIYVDDKKFNSFKKIARSVGYG-EDDLPLVSFQSVSKGYYGECGKRGGYMEIT 315          
BLAST of CX286884 vs. ExPASy Swiss-Prot
Match: ALAM_DICDI (Probable alanine aminotransferase, mitochondrial OS=Dictyostelium discoideum GN=gpt PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 4.903e-47
Identity = 85/153 (55.56%), Postives = 118/153 (77.12%), Query Frame = 3
Query:    3 VLVPVPQYPLYSATISLLGGSLVPYYLEETANWGLDLNDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIY-QDERPFVSSKKVLMDMGPPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNI 458
            +L+P+PQYPLYSATI L  GS + Y L E   W L+++ L+ S   A SKGI  RA+VIINPGNPTGQCL  AN+ EI++FC ++N+VLL DEVYQ+N+Y ++ +PF+S KKV+ DMG  ++ ++++VSFH+VSKG+ GECG+RGGY E+  +
Sbjct:  219 ILIPIPQYPLYSATIELYNGSQLGYLLNEEKGWSLEISQLEHSYNDAVSKGINPRALVIINPGNPTGQCLDRANMEEIVKFCLEKNVVLLADEVYQENVYVKESKPFISFKKVVKDMGGDYA-DLEMVSFHSVSKGFVGECGKRGGYMELNGV 370          
BLAST of CX286884 vs. ExPASy Swiss-Prot
Match: ALAT1_HUMAN (Alanine aminotransferase 1 OS=Homo sapiens GN=GPT PE=1 SV=3)

HSP 1 Score: 167.162 bits (422), Expect = 3.078e-41
Identity = 79/152 (51.97%), Postives = 106/152 (69.74%), Query Frame = 3
Query:    3 VLVPVPQYPLYSATISLLGGSLVPYYLEETANWGLDLNDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGPPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNI 458
            VL+P+PQYPLYSAT++ LG   V YYL+E   W LD+ +L +++ QAR      RA+ +INPGNPTGQ  +   +  ++RF ++E L LL DEVYQ N+Y     F S KKVLM+MGPP++ + +L SFH+ SKGY GECG RGGY E+ N+
Sbjct:  182 VLIPIPQYPLYSATLAELGAVQVDYYLDEERAWALDVAELHRALGQARDH-CRPRALCVINPGNPTGQVQTRECIEAVIRFAFEERLFLLADEVYQDNVYAAGSQFHSFKKVLMEMGPPYAGQQELASFHSTSKGYMGECGFRGGYVEVVNM 332          
BLAST of CX286884 vs. ExPASy Swiss-Prot
Match: ALAT1_RAT (Alanine aminotransferase 1 OS=Rattus norvegicus GN=Gpt PE=1 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 5.250e-41
Identity = 77/152 (50.66%), Postives = 107/152 (70.39%), Query Frame = 3
Query:    3 VLVPVPQYPLYSATISLLGGSLVPYYLEETANWGLDLNDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGPPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNI 458
            VL+P+PQYPLYSA ++ L    V YYL+E   W LD+ +L++++ QAR +    R + +INPGNPTGQ  +   +  ++RF ++E L L+ DEVYQ N+Y +   F S KKVLM+MGPP+S + +L SFH+VSKGY GECG RGGY E+ N+
Sbjct:  182 VLIPIPQYPLYSAALAELDAVQVDYYLDEERAWALDIAELRRALCQARDR-CCPRVLCVINPGNPTGQVQTRECIEAVIRFAFKEGLFLMADEVYQDNVYAEGSQFHSFKKVLMEMGPPYSTQQELASFHSVSKGYMGECGFRGGYVEVVNM 332          
BLAST of CX286884 vs. ExPASy Swiss-Prot
Match: ALAT1_BOVIN (Alanine aminotransferase 1 OS=Bos taurus GN=GPT PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 8.955e-41
Identity = 76/152 (50.00%), Postives = 106/152 (69.74%), Query Frame = 3
Query:    3 VLVPVPQYPLYSATISLLGGSLVPYYLEETANWGLDLNDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGPPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNI 458
            VL+P+PQYPLYSA ++      V YYL+E   W LD+ +L++++ QAR      RA+ +INPGNPTGQ  +   + +++RF Y+E L LL DEVYQ N+Y +   F S KKVL +MGPP++ + +L SFH++SKGY GECG RGGY E+ N+
Sbjct:  182 VLIPIPQYPLYSAALAEFNAVQVDYYLDEERAWALDVAELRRALRQARDH-CRPRALCVINPGNPTGQVQTRECIEDVIRFAYEEKLFLLADEVYQDNVYAESSQFHSFKKVLTEMGPPYAAQQELASFHSISKGYMGECGFRGGYVEVVNM 332          
BLAST of CX286884 vs. ExPASy Swiss-Prot
Match: ALAT2_XENTR (Alanine aminotransferase 2 OS=Xenopus tropicalis GN=gpt2 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.528e-40
Identity = 79/152 (51.97%), Postives = 106/152 (69.74%), Query Frame = 3
Query:    3 VLVPVPQYPLYSATISLLGGSLVPYYLEETANWGLDLNDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGPPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNI 458
            VL+P+PQYPLYSA ++ L    V YYL+E   W LD+N+L++S+ +AR K    + + IINPGNPTGQ  S   + +++RF  +ENL L+ DEVYQ N+Y     F S KKVL +MGP +S+ V+L SFH+ SKGY GECG RGGY E+ N+
Sbjct:  210 VLIPIPQYPLYSAALAELNAVQVNYYLDEENCWALDINELRRSLTEAR-KHCDPKVLCIINPGNPTGQVQSRKCIEDVIRFAAEENLFLMADEVYQDNVYAKGCTFHSFKKVLFEMGPKYSETVELASFHSTSKGYMGECGFRGGYMEVINM 360          
BLAST of CX286884 vs. ExPASy Swiss-Prot
Match: ALAT1_MOUSE (Alanine aminotransferase 1 OS=Mus musculus GN=Gpt PE=2 SV=3)

HSP 1 Score: 163.31 bits (412), Expect = 4.444e-40
Identity = 75/152 (49.34%), Postives = 106/152 (69.74%), Query Frame = 3
Query:    3 VLVPVPQYPLYSATISLLGGSLVPYYLEETANWGLDLNDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGPPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNI 458
            VL+P+PQYPLYSA ++ L    V YYL+E   W LD+ +L++++ QAR +    R + +INPGNPTGQ  +   +  ++RF ++E L L+ DEVYQ N+Y +   F S KKVL +MGPP++ + +L SFH+VSKGY GECG RGGY E+ N+
Sbjct:  182 VLIPIPQYPLYSAALAELDAVQVDYYLDEERAWALDIAELRRALCQARDR-CCPRVLCVINPGNPTGQVQTRECIEAVIRFAFEEGLFLMADEVYQDNVYAEGSQFHSFKKVLTEMGPPYATQQELASFHSVSKGYMGECGFRGGYVEVVNM 332          
BLAST of CX286884 vs. ExPASy Swiss-Prot
Match: ALAT2_XENLA (Alanine aminotransferase 2 OS=Xenopus laevis GN=gpt2 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 5.805e-40
Identity = 77/152 (50.66%), Postives = 107/152 (70.39%), Query Frame = 3
Query:    3 VLVPVPQYPLYSATISLLGGSLVPYYLEETANWGLDLNDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGPPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNI 458
            V++P+PQYPLYSA ++ L    V YYL+E   W LD+N+L++++A+AR K    + + IINPGNPTGQ  S   + +++RF  +ENL L+ DEVYQ N+Y     F S KKVL +MGP +S+ ++L SFH+ SKGY GECG RGGY E+ N+
Sbjct:  226 VMIPIPQYPLYSAALAELDAVQVNYYLDEENCWALDINELRRALAEAR-KHCDPKVLCIINPGNPTGQVQSRKCIEDVIRFAAEENLFLMADEVYQDNVYAKGCAFHSFKKVLFEMGPKYSETLELASFHSTSKGYMGECGFRGGYMEVINM 376          
BLAST of CX286884 vs. ExPASy Swiss-Prot
Match: ALAT2_HUMAN (Alanine aminotransferase 2 OS=Homo sapiens GN=GPT2 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.881e-39
Identity = 76/152 (50.00%), Postives = 104/152 (68.42%), Query Frame = 3
Query:    3 VLVPVPQYPLYSATISLLGGSLVPYYLEETANWGLDLNDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGPPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNI 458
            V++P+PQYPLYSA IS L    V YYL+E   W L++N+L+++V +A+      + + IINPGNPTGQ  S   + +++ F ++E L LL DEVYQ N+Y  +  F S KKVL +MGP +S  V+L SFH+ SKGY GECG RGGY E+ N+
Sbjct:  209 VMIPIPQYPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDH-CDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINL 359          
The following BLAST results are available for this feature:
BLAST of CX286884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
ALA2_HORVU1.990e-4858.67Alanine aminotransferase 2 OS=Hordeum vulgare PE=2... [more]
ALA2_PANMI3.395e-4860.00Alanine aminotransferase 2 OS=Panicum miliaceum PE... [more]
ALAM_DICDI4.903e-4755.56Probable alanine aminotransferase, mitochondrial O... [more]
ALAT1_HUMAN3.078e-4151.97Alanine aminotransferase 1 OS=Homo sapiens GN=GPT ... [more]
ALAT1_RAT5.250e-4150.66Alanine aminotransferase 1 OS=Rattus norvegicus GN... [more]
ALAT1_BOVIN8.955e-4150.00Alanine aminotransferase 1 OS=Bos taurus GN=GPT PE... [more]
ALAT2_XENTR1.528e-4051.97Alanine aminotransferase 2 OS=Xenopus tropicalis G... [more]
ALAT1_MOUSE4.444e-4049.34Alanine aminotransferase 1 OS=Mus musculus GN=Gpt ... [more]
ALAT2_XENLA5.805e-4050.66Alanine aminotransferase 2 OS=Xenopus laevis GN=gp... [more]
ALAT2_HUMAN2.881e-3950.00Alanine aminotransferase 2 OS=Homo sapiens GN=GPT2... [more]

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Properties
Property NameValue
Genbank descriptionC01002B09Rv Veg1 Citrus clementina cDNA clone C01002B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286884 ID=CX286884; Name=CX286884; organism=Citrus clementina; type=EST; length=462bp
GGGTTTTGGTTCCAGTTCCACAGTACCCACTGTACTCAGCTACCATATCT
CTTTTAGGTGGTTCTCTTGTTCCATACTACTTGGAAGAGACAGCAAATTG
GGGTCTTGATCTTAATGACCTTCAGCAGTCAGTTGCACAGGCTCGTTCTA
AAGGAATTACGGTTAGAGCAATGGTGATTATTAATCCTGGCAACCCAACC
GGTCAGTGTCTTAGTGAAGCTAATCTAAGAGAAATATTGCGATTTTGTTA
TCAAGAGAACTTAGTGTTACTTGGAGACGAGGTTTATCAGCAGAACATTT
ACCAGGATGAGCGCCCCTTTGTTAGTTCTAAAAAGGTTTTGATGGATATG
GGGCCGCCCTTCAGCAAGGAGGTTCAGCTTGTTTCTTTCCACACTGTCTC
GAAAGGATATTGGGGTGAATGTGGACAACGTGGTGGATATTTTGAGATGA
CTAATATTCCCC
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