CX286890

Overview
NameCX286890
Unique NameCX286890
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length575
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX286890 vs. ExPASy Swiss-Prot
Match: Y4105_ARATH (Uncharacterized protein At4g01050 OS=Arabidopsis thaliana GN=At4g01050 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.380e-17
Identity = 59/137 (43.07%), Postives = 71/137 (51.82%), Query Frame = 3 
Query:    3 KQTLQQVDEFLNTKVAPKELADDIKQIGKTLLPSPANGKALPA---------------------------------STDSKVQKADDSPEAVPQPKVEAAADPPPQVNSVPKTEVKADSLPRFQRSLSPYPAYPDLK 314
            KQTL+QVDEFLNTKVAPKEL D++K+IGK LLP   + KALPA                                 + D  V + +  PE VP P +EAA     QV + P TE +A   P   R LSPY +YPDLK
Sbjct:  324 KQTLKQVDEFLNTKVAPKELVDELKEIGKALLPQSTSNKALPAPATVTAEAESATATTTTVDKPVPEPETVAATTTTVDKPVPEPEPVPEPVPVPAIEAAV--AAQVITEP-TETEAKPKPH-SRPLSPYASYPDLK 456
The following BLAST results are available for this feature:
BLAST of CX286890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4105_ARATH2.380e-1743.07Uncharacterized protein At4g01050 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC01002C04Rv Veg1 Citrus clementina cDNA clone C01002C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286890 ID=CX286890; Name=CX286890; organism=Citrus clementina; type=EST; length=575bp
GGAAACAAACACTACAACAGGTTGATGAATTCCTGAACACCAAGGTCGCC
CCTAAAGAGCTTGCTGATGACATAAAGCAAATTGGAAAGACACTTCTACC
ATCACCGGCAAATGGCAAGGCTCTCCCTGCCTCCACTGACAGCAAAGTCC
AGAAGGCAGATGATTCACCTGAGGCTGTCCCCCAGCCAAAAGTAGAAGCA
GCTGCAGACCCCCCTCCCCAAGTAAATTCGGTGCCCAAAACAGAAGTTAA
AGCAGACTCACTTCCTAGATTTCAAAGATCTCTTTCACCATACCCTGCTT
ATCCAGATTTGAAGCCTCCAACTTCTCCTACCCCATCACAGCCCTAGATT
GTTACAGATTTAAGCATCTGCAAGTATGTTTCTATAACAGGCAACTGCTA
TGGTTGGGAATATGAAAGCTACCTAGTGAGTTGTGCAATCTGCAGTTATT
ATTGAAACTTTTAGTCCAATGTGTCGCGACGAATTGCTTATATCACGAAA
TAGTCAGTCGGCCACATTCATCATGTTGTGTTCTTTATGCTGCTTGATTT
ACTTTTTGCAATGGTCACAGATGTC
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