CX286898

Overview
NameCX286898
Unique NameCX286898
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8 contig Ccv1_Contig8:1..540. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286898 vs. ExPASy Swiss-Prot
Match: PIN4_BOVIN (Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 OS=Bos taurus GN=PIN4 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.000e-20
Identity = 53/105 (50.48%), Postives = 65/105 (61.90%), Query Frame = 3
Query:  225 VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVAFNTPVGV------TSAPFKSTHGYHIILCEGRK 521
            VK RHILCEK GKI EA +KL+ G           +F+++AA+YSE    ++GGDLGW  RG M GPFQE AF  P+ V      T  P K+  GYHII+ EGRK
Sbjct:   38 VKVRHILCEKHGKILEAMEKLKSGM----------KFNEVAAQYSE-DKARQGGDLGWMTRGSMVGPFQEAAFALPISVLDKPVFTDPPVKTKFGYHIIMVEGRK 131          
BLAST of CX286898 vs. ExPASy Swiss-Prot
Match: PIN4_HUMAN (Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 OS=Homo sapiens GN=PIN4 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.820e-20
Identity = 53/105 (50.48%), Postives = 63/105 (60.00%), Query Frame = 3
Query:  225 VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVAFNTPVG------VTSAPFKSTHGYHIILCEGRK 521
            VK RHILCEK GKI EA +KL+ G            F+++AA+YSE    ++GGDLGW  RG M GPFQE AF  PV        T  P K+  GYHII+ EGRK
Sbjct:   38 VKVRHILCEKHGKIMEAMEKLKSGM----------RFNEVAAQYSE-DKARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 131          
BLAST of CX286898 vs. ExPASy Swiss-Prot
Match: PIN4_MOUSE (Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 OS=Mus musculus GN=Pin4 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.601e-20
Identity = 53/105 (50.48%), Postives = 62/105 (59.05%), Query Frame = 3
Query:  225 VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVAFNTPVG------VTSAPFKSTHGYHIILCEGRK 521
            VK RHILCEK GKI EA +KL+ G            FS++A +YSE    ++GGDLGW  RG M GPFQE AF  PV        T  P K+  GYHII+ EGRK
Sbjct:   38 VKVRHILCEKHGKIMEAMEKLKSGM----------RFSEVATQYSE-DKARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 131          
BLAST of CX286898 vs. ExPASy Swiss-Prot
Match: PIN4_XENTR (Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 OS=Xenopus tropicalis GN=pin4 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.296e-19
Identity = 51/105 (48.57%), Postives = 62/105 (59.05%), Query Frame = 3
Query:  225 VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVAFNTPVGV------TSAPFKSTHGYHIILCEGRK 521
            VK RHILCEK GK+ EA +KL+ G            FS++A +YSE    ++GGDLGW  RG M GPFQ+ AF  PV        T  P K+  GYHII+ EGRK
Sbjct:   34 VKVRHILCEKHGKVMEAMEKLKSG----------VRFSEVATQYSE-DKARQGGDLGWMTRGSMVGPFQDAAFALPVSTMDKPVYTDPPVKTKFGYHIIMVEGRK 127          
BLAST of CX286898 vs. ExPASy Swiss-Prot
Match: PIN4_TAEGU (Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 OS=Taeniopygia guttata GN=PIN4 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.211e-19
Identity = 52/105 (49.52%), Postives = 62/105 (59.05%), Query Frame = 3
Query:  225 VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVAFNTPVG------VTSAPFKSTHGYHIILCEGRK 521
            VK RHILCEK G+  EA +KL+ G            FS++AA+YSE    ++GGDLGW  RG M GPFQE AF  PV        T  P K+  GYHII+ EGRK
Sbjct:   35 VKVRHILCEKHGRAMEAMEKLKSG----------QRFSEVAAQYSE-DKARQGGDLGWMTRGSMVGPFQEAAFALPVSSMDKPVYTDPPVKTKFGYHIIMVEGRK 128          
BLAST of CX286898 vs. ExPASy Swiss-Prot
Match: PIN4_DANRE (Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 OS=Danio rerio GN=pin4 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.772e-19
Identity = 50/107 (46.73%), Postives = 63/107 (58.88%), Query Frame = 3
Query:  219 TYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVAFNTPVGV------TSAPFKSTHGYHIILCEGRK 521
            T VK RHILCEK GK  EA +K++ G            FS++AA+YSE    ++GGDLGW  RG M GPFQ+ AF  P+        T  P K+  GYHII+ EG+K
Sbjct:   33 TAVKVRHILCEKHGKCMEAMEKIKSGM----------RFSEVAAQYSE-DKARQGGDLGWMTRGSMVGPFQDAAFALPISTMDKPVYTDPPVKTKFGYHIIMVEGKK 128          
BLAST of CX286898 vs. ExPASy Swiss-Prot
Match: PIN4_EMENI (Peptidyl-prolyl cis-trans isomerase pin4 OS=Emericella nidulans GN=pin4 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.797e-14
Identity = 44/103 (42.72%), Postives = 61/103 (59.22%), Query Frame = 3
Query:  225 VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVAFNTPVGVTSAP----FKSTHGYHIILCEGRK 521
            V  RHILCEK  K  EA +K+++G          A+F ++A EYSE    ++GG LGW  +G++  PF+EVAF+     T  P     K+ +GYHII+ EGRK
Sbjct:   37 VNVRHILCEKFSKKEEALEKIRNG----------AKFDEVAREYSE-DKARQGGSLGWKSKGELELPFEEVAFSLEQSTTGNPKIGEAKTGYGYHIIMVEGRK 128          
BLAST of CX286898 vs. ExPASy Swiss-Prot
Match: PIN4_NEUCR (Peptidyl-prolyl cis-trans isomerase pin-4 OS=Neurospora crassa GN=pin-4 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.063e-13
Identity = 43/103 (41.75%), Postives = 57/103 (55.34%), Query Frame = 3
Query:  225 VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVAFNTPVGVTSAP----FKSTHGYHIILCEGRK 521
            +  RHILCEK GK  EA  K++DG          A+F  +A EYSE    + GG LGW  +G +   F++VAF      TS+P     K+  GYHII+ EG+K
Sbjct:   39 INVRHILCEKHGKKEEALAKIRDG----------ADFGAVAREYSE-DKARTGGSLGWKQKGTLDPEFEKVAFALETSSTSSPKIGEVKTQFGYHIIMVEGKK 130          
BLAST of CX286898 vs. ExPASy Swiss-Prot
Match: PIN4_GIBZE (Peptidyl-prolyl cis-trans isomerase PIN4 OS=Gibberella zeae GN=PIN4 PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.063e-13
Identity = 43/103 (41.75%), Postives = 56/103 (54.37%), Query Frame = 3
Query:  225 VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVAFNTPVGVTSAP----FKSTHGYHIILCEGRK 521
            +  RHILCEK  K  EA  KL DG           +F ++A EYSE    ++GG LGW  +G +   F+EVAF      T++P     K+  GYHII+ EGRK
Sbjct:   42 INVRHILCEKHAKKEEALAKLNDG----------VKFDEVAREYSE-DKARQGGSLGWKTKGSLDPKFEEVAFALETSTTNSPKFVEVKTGFGYHIIMVEGRK 133          
BLAST of CX286898 vs. ExPASy Swiss-Prot
Match: PRSA_GEOTN (Foldase protein prsA OS=Geobacillus thermodenitrificans (strain NG80-2) GN=prsA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.890e-13
Identity = 41/94 (43.62%), Postives = 51/94 (54.26%), Query Frame = 3
Query:  225 VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECP-SGKKGGDLGWFPRGKMAGPFQEVAFNTPVGVTSAPFKSTHGYHII 503
            V+A HIL E +    E   KL  G           +F+K+A EYS+ P S   GGDLGWF  GKM   F+E A+   VG  S P K+ +GYHII
Sbjct:  136 VRASHILVEDEKTAKEVKAKLDKG----------EDFAKLAKEYSQDPGSASNGGDLGWFGAGKMVKEFEEAAYKLKVGEVSDPIKTDYGYHII 219          
The following BLAST results are available for this feature:
BLAST of CX286898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PIN4_BOVIN2.000e-2050.48Peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
PIN4_HUMAN5.820e-2050.48Peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
PIN4_MOUSE7.601e-2050.48Peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
PIN4_XENTR1.296e-1948.57Peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
PIN4_TAEGU2.211e-1949.52Peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
PIN4_DANRE3.772e-1946.73Peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
PIN4_EMENI2.797e-1442.72Peptidyl-prolyl cis-trans isomerase pin4 OS=Emeric... [more]
PIN4_NEUCR1.063e-1341.75Peptidyl-prolyl cis-trans isomerase pin-4 OS=Neuro... [more]
PIN4_GIBZE1.063e-1341.75Peptidyl-prolyl cis-trans isomerase PIN4 OS=Gibber... [more]
PRSA_GEOTN6.890e-1343.62Foldase protein prsA OS=Geobacillus thermodenitrif... [more]

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Properties
Property NameValue
Genbank descriptionC01002C12Rv Veg1 Citrus clementina cDNA clone C01002C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286898 ID=CX286898; Name=CX286898; organism=Citrus clementina; type=EST; length=538bp
TAGAGGTTGGCAGTTGGCTGCTGGTTCTTTTGTGTTTCTGAGTTACTCTG
TTGAACCCTTTCGATCGAAGTCAAATCTTTTAAGATTTTTCACCTATGGG
AAAGGATTCTAAACCAAAGGATGGAGGGAAGGGTAAAGGAAAACAGGCAG
CTGGTGGAGCTGATGATTCAAAGGGTAAAGGAAAAGGCGGGAAGTCAGCT
GATGGCCTCGGCACCTGCACATATGTCAAAGCACGACACATCTTATGTGA
GAAGCAAGGGAAGATCAATGAGGCATACAAGAAGCTGCAAGATGGTTGGC
TGAGCAATGGGGACAAGGTTCCACAAGCTGAGTTTTCAAAGATAGCTGCA
GAATACTCAGAATGCCCGTCAGGAAAGAAGGGTGGAGATCTTGGATGGTT
TCCACGTGGAAAGATGGCTGGCCCATTTCAGGAAGTTGCCTTCAATACTC
CTGTTGGAGTTACCAGTGCACCTTTCAAGTCTACGCATGGATACCACATA
ATCTTGTGTGAAGGGAGGAAGAATTGATCGGAAACAGT
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