CX286911

Overview
NameCX286911
Unique NameCX286911
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286911 vs. ExPASy Swiss-Prot
Match: HAL3A_ARATH (Phosphopantothenoylcysteine decarboxylase OS=Arabidopsis thaliana GN=HAL3A PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.742e-41
Identity = 77/92 (83.70%), Postives = 83/92 (90.22%), Query Frame = 1
Query:  190 GGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAESRNQSGDG 465
            GGLCDNLLTCI+RAWDY KPLFVAPAMNT MWNNPFTERHL+S+DELGI+LIPP+ KRLACGDYGNGAMAEPSLIYSTVRLF ES+     G
Sbjct:  115 GGLCDNLLTCIIRAWDYTKPLFVAPAMNTLMWNNPFTERHLLSLDELGITLIPPIKKRLACGDYGNGAMAEPSLIYSTVRLFWESQAHQQTG 206          
BLAST of CX286911 vs. ExPASy Swiss-Prot
Match: HAL3B_ARATH (Probable phosphopantothenoylcysteine decarboxylase OS=Arabidopsis thaliana GN=HAL3B PE=2 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 1.926e-40
Identity = 75/86 (87.21%), Postives = 82/86 (95.35%), Query Frame = 1
Query:  190 GGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAESR 447
            GGLCDNLLTCIVRAWDY+KPLFVAPAMNT MWNNPFTERHL+ +DELGI+LIPP+ K+LACGDYGNGAMAEPSLIYSTVRLF ES+
Sbjct:  107 GGLCDNLLTCIVRAWDYSKPLFVAPAMNTLMWNNPFTERHLVLLDELGITLIPPIKKKLACGDYGNGAMAEPSLIYSTVRLFWESQ 192          
BLAST of CX286911 vs. ExPASy Swiss-Prot
Match: COAC_MOUSE (Phosphopantothenoylcysteine decarboxylase OS=Mus musculus GN=Ppcdc PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.448e-19
Identity = 43/79 (54.43%), Postives = 53/79 (67.09%), Query Frame = 1
Query:  193 GLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVR 429
            G+CDNLLTC++RAWD NKPL   PAMNT MW +P T + +  +   G   IP VSK+L CGD G GAMAE   I + V+
Sbjct:  114 GICDNLLTCVIRAWDLNKPLLFCPAMNTAMWEHPLTAQQVAQLKAFGYVEIPCVSKKLVCGDQGLGAMAEVETIVAKVQ 192          
BLAST of CX286911 vs. ExPASy Swiss-Prot
Match: COAC_HUMAN (Phosphopantothenoylcysteine decarboxylase OS=Homo sapiens GN=PPCDC PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.028e-17
Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = 1
Query:  193 GLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVR 429
            G+CDNLLTC++RAWD +KPL   PAMNT MW +P T + +  +   G   IP V+K+L CGD G GAMAE   I   V+
Sbjct:  114 GICDNLLTCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGLGAMAEVGTIVDKVK 192          
BLAST of CX286911 vs. ExPASy Swiss-Prot
Match: COAC_DICDI (Putative phosphopantothenoylcysteine decarboxylase OS=Dictyostelium discoideum GN=ppcdc PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.291e-17
Identity = 41/82 (50.00%), Postives = 58/82 (70.73%), Query Frame = 1
Query:  193 GLCDNLLTCIVRAWDY-NKPLFVAPAMNTFMWNNPFTERHLMSIDEL--GISLIPPVSKRLACGDYGNGAMAE-PSLIYSTV 426
            GLCDNLLT ++RAWDY NK + +APAMNT MW NPFT +H+ ++  +   + +I P+ K+L CGD G GAM + P ++  T+
Sbjct:  112 GLCDNLLTSLIRAWDYKNKSMILAPAMNTMMWENPFTFKHIETLKSISPNVFIIDPIEKKLFCGDIGMGAMEQVPKIVDFTI 193          
BLAST of CX286911 vs. ExPASy Swiss-Prot
Match: TYSY_SCHPO (Probable thymidylate synthase OS=Schizosaccharomyces pombe GN=SPAC15E1.04 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.940e-16
Identity = 40/72 (55.56%), Postives = 48/72 (66.67%), Query Frame = 1
Query:  193 GLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDEL--GISLIPPVSKRLACGDYGNGAMAE 402
            GLCDNLLT ++RAW   KP+ +APAMNT MW NP T+ HL +I  +      I P+ K LACGD G G MAE
Sbjct:  130 GLCDNLLTSLIRAWAPLKPILLAPAMNTLMWTNPITQEHLSAISRIYKNSEFIMPIEKVLACGDIGMGGMAE 201          
BLAST of CX286911 vs. ExPASy Swiss-Prot
Match: YKI8_YEAST (Uncharacterized protein YKL088W OS=Saccharomyces cerevisiae GN=YKL088W PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.898e-14
Identity = 41/96 (42.71%), Postives = 57/96 (59.38%), Query Frame = 1
Query:  193 GLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSI--DELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAESRNQSGDGKVG 474
            G+C+NLLT ++R W    P+ +APAMNTFM+ NP T++HL S+  D   I ++ PV K L CGD G G M E + I   VR       ++ D + G
Sbjct:  417 GICNNLLTSVMRDWSPLTPVLIAPAMNTFMYINPMTKKHLTSLVQDYPFIQVLKPVEKVLICGDIGMGGMREWTDIVEIVRRRINEIRKARDEETG 512          
The following BLAST results are available for this feature:
BLAST of CX286911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
HAL3A_ARATH1.742e-4183.70Phosphopantothenoylcysteine decarboxylase OS=Arabi... [more]
HAL3B_ARATH1.926e-4087.21Probable phosphopantothenoylcysteine decarboxylase... [more]
COAC_MOUSE2.448e-1954.43Phosphopantothenoylcysteine decarboxylase OS=Mus m... [more]
COAC_HUMAN1.028e-1751.90Phosphopantothenoylcysteine decarboxylase OS=Homo ... [more]
COAC_DICDI2.291e-1750.00Putative phosphopantothenoylcysteine decarboxylase... [more]
TYSY_SCHPO1.940e-1655.56Probable thymidylate synthase OS=Schizosaccharomyc... [more]
YKI8_YEAST6.898e-1442.71Uncharacterized protein YKL088W OS=Saccharomyces c... [more]
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Properties
Property NameValue
Genbank descriptionC01002E01Rv Veg1 Citrus clementina cDNA clone C01002E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286911 ID=CX286911; Name=CX286911; organism=Citrus clementina; type=EST; length=639bp
TTTGCTTATGTTGAGTAATACACTACTGTTATGTAAGCATGCCTGTATCT
TGAGTTGTGCATCATACAGTTCATGTCCCTTTCCTGTATAATGATTTAGA
AGGACTTCTCTTGACTGCCTCTGGCATCTCAATTTTCGTATGATTCTGAT
TTGGCTCTCATAATTGCTATATTTCTGTTGTAGATTGCAGGTGGATTGTG
TGACAATCTGCTGACATGCATTGTGCGGGCATGGGACTACAATAAGCCAC
TGTTTGTTGCACCTGCTATGAACACTTTCATGTGGAATAATCCATTCACA
GAGCGGCATCTTATGTCAATTGATGAGCTTGGAATTTCTCTCATTCCACC
TGTCTCCAAAAGGCTGGCTTGCGGAGATTATGGTAATGGTGCCATGGCTG
AACCTTCATTGATCTACTCGACTGTGAGACTGTTCGCAGAGTCAAGGAAC
CAGTCAGGCGATGGAAAAGTTGGTTAATCCAGTCCAGTTTGCATGGAATG
CTAAATTTCTTGTTGTAGTCCATTGTCCCCGGATTAAGTGACAAACGCTA
TATTGAAACTATATATGTCATCTGAGAGTGTTCTGATCTACTTTGTAATC
ATGTACGATATTGCACGTTAGCTTTTGGAAGTGAAATGT
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