CX286980

Overview
NameCX286980
Unique NameCX286980
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10095 contig Ccv1_Contig10095:114..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1)

HSP 1 Score: 325.094 bits (832), Expect = 1.787e-88
Identity = 159/180 (88.33%), Postives = 172/180 (95.56%), Query Frame = 3
Query:   84 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTAN 623
            MSNEYDYLFKLLLIGDSSVGKSCLLLRFADD+Y+DSYISTIGVDFKIRT+E DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD TEMESFNNVKQWL+EIDRYAN+SVCKLL+GNK D+VE+KVV T+T +A ADELGIPFLETSAKD+INVEQAFLT+AGEIKKKMG+Q  AN
Sbjct:    1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYANESVCKLLIGNKNDMVESKVVSTETGRALADELGIPFLETSAKDSINVEQAFLTIAGEIKKKMGSQTNAN 180          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 306.605 bits (784), Expect = 6.576e-83
Identity = 149/180 (82.78%), Postives = 164/180 (91.11%), Query Frame = 3
Query:   84 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTAN 623
            M+ EYDYLFKLLLIGDS VGKSCLLLRFADDSY++SYISTIGVDFKIRTVE DGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVT+ ESFNNVKQWLNEIDRYA+++V KLLVGNKCDL EN+VV  +  KA ADE+GIPFLETSAKDA NVE+AF+TMAGEIK +M +QP  N
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAENRVVSYEAGKALADEIGIPFLETSAKDATNVEKAFMTMAGEIKNRMASQPATN 180          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: YPTM2_MAIZE (GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 7.271e-82
Identity = 150/179 (83.80%), Postives = 163/179 (91.06%), Query Frame = 3
Query:   84 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTA 620
            M+ EYDYLFKLLLIGDS VGKSCLLLRFADDSY+DSYISTIGVDFKIRTVE DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT+ ESFNNVKQWLNEIDRYA+D+V KLLVGNK DL  NKVV T+TAKAFADE+GIPF+ETSAK+A NV+QAF+ MA  IK +M +QP A
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKSDLTANKVVATETAKAFADEMGIPFMETSAKNATNVQQAFMAMAASIKDRMASQPAA 179          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 303.138 bits (775), Expect = 7.271e-82
Identity = 149/177 (84.18%), Postives = 165/177 (93.22%), Query Frame = 3
Query:   84 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK-KMGNQ 611
            MSNE+DYLFKLLLIGDSSVGKSC LLRFADDSYVDSYISTIGVDFKIRTVE++GKT+KLQIWDTAGQERFRTITSSYYRGAHGIIIVYD+T+MESFNNVKQWL+EIDRYANDSV KLLVGNKCDL EN+ VDT  A+A+A E+GIPFLETSAK++INVE+AFL M+  IKK K G+Q
Sbjct:    1 MSNEFDYLFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAENRAVDTSVAQAYAQEVGIPFLETSAKESINVEEAFLAMSAAIKKSKAGSQ 177          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 8.039e-81
Identity = 148/179 (82.68%), Postives = 161/179 (89.94%), Query Frame = 3
Query:   84 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTA 620
            M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDFKIRT+ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVT+ ESFNNVKQWL EIDRYA+++V KLLVGNKCDL   KVVD  TAK FAD LGIPFLETSAK+A NVEQAF+TMA EIKK+MG   T+
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGATS 179          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 299.671 bits (766), Expect = 8.039e-81
Identity = 148/179 (82.68%), Postives = 161/179 (89.94%), Query Frame = 3
Query:   84 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTA 620
            M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDFKIRT+ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVT+ ESFNNVKQWL EIDRYA+++V KLLVGNKCDL   KVVD  TAK FAD LGIPFLETSAK+A NVEQ+F+TMA EIKK+MG   TA
Sbjct:    4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATA 182          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 299.671 bits (766), Expect = 8.039e-81
Identity = 148/179 (82.68%), Postives = 161/179 (89.94%), Query Frame = 3
Query:   84 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTA 620
            M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDFKIRT+ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVT+ ESFNNVKQWL EIDRYA+++V KLLVGNKCDL   KVVD  TAK FAD LGIPFLETSAK+A NVEQ+F+TMA EIKK+MG   TA
Sbjct:    4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATA 182          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 299.671 bits (766), Expect = 8.039e-81
Identity = 148/179 (82.68%), Postives = 161/179 (89.94%), Query Frame = 3
Query:   84 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTA 620
            M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDFKIRT+ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVT+ ESFNNVKQWL EIDRYA+++V KLLVGNKCDL   KVVD  TAK FAD LGIPFLETSAK+A NVEQ+F+TMA EIKK+MG   TA
Sbjct:    4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATA 182          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: RAB1A_CANFA (Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3)

HSP 1 Score: 299.671 bits (766), Expect = 8.039e-81
Identity = 148/179 (82.68%), Postives = 161/179 (89.94%), Query Frame = 3
Query:   84 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTA 620
            M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDFKIRT+ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVT+ ESFNNVKQWL EIDRYA+++V KLLVGNKCDL   KVVD  TAK FAD LGIPFLETSAK+A NVEQ+F+TMA EIKK+MG   TA
Sbjct:    4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATA 182          
BLAST of CX286980 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 299.286 bits (765), Expect = 1.050e-80
Identity = 146/180 (81.11%), Postives = 163/180 (90.56%), Query Frame = 3
Query:   84 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTAN 623
            M+ EYDYLFKLLLIGDS VGKSCLLLRF+DDSYV+SYISTIGVDFKIRTVE DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT+ ESFNNVKQWL+EIDRYA+D+V KLLVGNK DL EN+ +  +TAKAFADE+GIPF+ETSAKDA NVEQAF+ M+  IK++M +QP  N
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTENRAIPYETAKAFADEIGIPFMETSAKDATNVEQAFMAMSASIKERMASQPAGN 180          
The following BLAST results are available for this feature:
BLAST of CX286980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RABD1_ARATH1.787e-8888.33Ras-related protein RABD1 OS=Arabidopsis thaliana ... [more]
RIC1_ORYSJ6.576e-8382.78Ras-related protein RIC1 OS=Oryza sativa subsp. ja... [more]
YPTM2_MAIZE7.271e-8283.80GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=... [more]
YPTM1_MAIZE7.271e-8284.18GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]
RAB1_DISOM8.039e-8182.68Ras-related protein ORAB-1 OS=Discopyge ommata PE=... [more]
RAB1A_RAT8.039e-8182.68Ras-related protein Rab-1A OS=Rattus norvegicus GN... [more]
RAB1A_MOUSE8.039e-8182.68Ras-related protein Rab-1A OS=Mus musculus GN=Rab1... [more]
RAB1A_HUMAN8.039e-8182.68Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1... [more]
RAB1A_CANFA8.039e-8182.68Ras-related protein Rab-1A OS=Canis familiaris GN=... [more]
RBD2A_ARATH1.050e-8081.11Ras-related protein RABD2A OS=Arabidopsis thaliana... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01003C03SK Veg1 Citrus clementina cDNA clone C01003C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286980 ID=CX286980; Name=CX286980; organism=Citrus clementina; type=EST; length=625bp
CCCTTTCATTTTCTTTTTCTCTTTCTCGCTCTCCAAACAGGGCAAACGGA
CCGTCGCAAGATTCTTTACTTCCATCCAAAATCATGAGCAACGAATACGA
CTATCTGTTCAAGCTGTTGCTTATCGGAGACTCGTCCGTCGGGAAGTCCT
GCCTGCTGCTCCGATTTGCTGATGATTCTTATGTCGACAGCTACATCAGT
ACCATTGGAGTTGATTTTAAAATAAGAACTGTGGAGCTGGATGGGAAGAC
GATCAAACTGCAGATTTGGGACACTGCTGGACAGGAGCGATTCAGGACTA
TAACTAGCAGTTATTACCGAGGAGCCCATGGAATCATAATTGTCTATGAC
GTAACTGAGATGGAGAGCTTCAATAATGTCAAGCAGTGGTTGAATGAGAT
TGACAGATACGCAAATGACAGTGTATGCAAGCTTCTAGTTGGGAACAAAT
GCGATTTAGTTGAGAACAAGGTTGTGGACACACAGACAGCCAAGGCATTT
GCAGATGAACTGGGGATTCCTTTCCTGGAGACGAGCGCCAAAGATGCAAT
CAATGTGGAGCAGGCTTTCTTGACCATGGCTGGCGAGATTAAGAAAAAAA
TGGGCAACCAGCCTACTGCAAACAA
back to top