CX286986

Overview
NameCX286986
Unique NameCX286986
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX286986_ssr394 microsatellite CX286986_ssr394:394..405. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX286986 vs. ExPASy Swiss-Prot
Match: ERDL3_ARATH (Sugar transporter ERD6-like 3 OS=Arabidopsis thaliana GN=SUGTL2 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.220e-21
Identity = 46/84 (54.76%), Postives = 66/84 (78.57%), Query Frame = 3
Query:  408 CF--QVGYSSPAESGMRADLGLSVTQYSVFGSVLTFGGIIGSLVNGKIADVTGRRGAMWLSELFCIGGWLAIAFSKDVWSLYLG 653
            CF    GYSS A++G+  DLGLSV QYS+FGS++TFGG+IG++ +GK+AD+ GR+G MW +++FCI GW+A+A +KD   L +G
Sbjct:   45 CFGCAAGYSSVAQTGIINDLGLSVAQYSMFGSIMTFGGMIGAIFSGKVADLMGRKGTMWFAQIFCIFGWVAVALAKDSMWLDIG 128          
BLAST of CX286986 vs. ExPASy Swiss-Prot
Match: EDL13_ARATH (Putative sugar transporter ERD6-like 13 OS=Arabidopsis thaliana GN=At3g20460 PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 8.746e-20
Identity = 42/78 (53.85%), Postives = 62/78 (79.49%), Query Frame = 3
Query:  420 GYSSPAESGMRADLGLSVTQYSVFGSVLTFGGIIGSLVNGKIADVTGRRGAMWLSELFCIGGWLAIAFSKDVWSLYLG 653
            G++SPA++G+ A L LS+ ++S FG+VLT GG++G+ ++GK+ADV GRRGA+ +S  FC+ GWL IAFS+  WSL +G
Sbjct:   72 GFTSPAQTGIMAGLNLSLAEFSFFGAVLTIGGLVGAAMSGKLADVFGRRGALGVSNSFCMAGWLMIAFSQATWSLDIG 149          
BLAST of CX286986 vs. ExPASy Swiss-Prot
Match: ERDL7_ARATH (Sugar transporter ERD6-like 7 OS=Arabidopsis thaliana GN=At2g48020 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.545e-19
Identity = 43/78 (55.13%), Postives = 62/78 (79.49%), Query Frame = 3
Query:  420 GYSSPAESGMRADLGLSVTQYSVFGSVLTFGGIIGSLVNGKIADVTGRRGAMWLSELFCIGGWLAIAFSKDVWSLYLG 653
            GYSSPA++ +R DL L++ ++S+FGS+LTFG +IG++ +G IAD+ GR+GAM +S  FC+ GWLAI F+K V +L LG
Sbjct:   47 GYSSPAQAAIRNDLSLTIAEFSLFGSLLTFGAMIGAITSGPIADLVGRKGAMRVSSAFCVVGWLAIIFAKGVVALDLG 124          
BLAST of CX286986 vs. ExPASy Swiss-Prot
Match: EDL16_ARATH (Sugar transporter ERD6-like 16 OS=Arabidopsis thaliana GN=At5g18840 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.069e-17
Identity = 40/79 (50.63%), Postives = 60/79 (75.95%), Query Frame = 3
Query:  417 VGYSSPAESGMRADLGLSVTQYSVFGSVLTFGGIIGSLVNGKIADVTGRRGAMWLSELFCIGGWLAIAFSKDVWSLYLG 653
            VGYS+P +S +R DL LS+ ++S+FGS+LT G ++G++++GKI+D +GR+GAM  S  FCI GWLA+ F+K    L +G
Sbjct:   62 VGYSAPTQSSIRQDLNLSLAEFSMFGSILTIGAMLGAVMSGKISDFSGRKGAMRTSACFCITGWLAVFFTKGALLLDVG 140          
BLAST of CX286986 vs. ExPASy Swiss-Prot
Match: ERDL1_ARATH (Sugar transporter ERD6-like 1 OS=Arabidopsis thaliana GN=SUGTL4 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.382e-17
Identity = 42/79 (53.16%), Postives = 57/79 (72.15%), Query Frame = 3
Query:  417 VGYSSPAESGMRADLGLSVTQYSVFGSVLTFGGIIGSLVNGKIADVTGRRGAMWLSELFCIGGWLAIAFSKDVWSLYLG 653
            + YSSPA+S +  +LGLSV  YS F SV+T GG+I +  +GKIA V GRR  MW++++FCI GWLA+AF+ D   L +G
Sbjct:   45 MSYSSPAQSKIMEELGLSVADYSFFTSVMTLGGMITAAFSGKIAAVIGRRQTMWIADVFCIFGWLAVAFAHDKMLLNIG 123          
BLAST of CX286986 vs. ExPASy Swiss-Prot
Match: ERDL5_ARATH (Sugar transporter ERD6-like 5 OS=Arabidopsis thaliana GN=At1g54730 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.111e-17
Identity = 40/71 (56.34%), Postives = 54/71 (76.06%), Query Frame = 3
Query:  417 VGYSSPAESGMRADLGLSVTQYSVFGSVLTFGGIIGSLVNGKIADVTGRRGAMWLSELFCIGGWLAIAFSK 629
            +GYSSP +S +  +L LSV +YS+FGS+LT G +IG+ ++G+IAD+ GRR  M  SE+FCI GWLAI  SK
Sbjct:   50 IGYSSPVQSDLTKELNLSVAEYSLFGSILTIGAMIGAAMSGRIADMIGRRATMGFSEMFCILGWLAIYLSK 120          
BLAST of CX286986 vs. ExPASy Swiss-Prot
Match: EDL17_ARATH (Sugar transporter ERD6-like 17 OS=Arabidopsis thaliana GN=SFP1 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.063e-17
Identity = 42/78 (53.85%), Postives = 54/78 (69.23%), Query Frame = 3
Query:  420 GYSSPAESGMRADLGLSVTQYSVFGSVLTFGGIIGSLVNGKIADVTGRRGAMWLSELFCIGGWLAIAFSKDVWSLYLG 653
            GY+S AE+G+  DL LS+ Q+S FGS  T G  IG+L  G +A V GRRG MW+S+  CI GWL+IAF+K+V  L  G
Sbjct:   50 GYTSGAETGVMKDLDLSIAQFSAFGSFATLGAAIGALFCGNLAMVIGRRGTMWVSDFLCITGWLSIAFAKEVVLLNFG 127          
BLAST of CX286986 vs. ExPASy Swiss-Prot
Match: ERD6_ARATH (Sugar transporter ERD6 OS=Arabidopsis thaliana GN=ERD6 PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 5.306e-17
Identity = 40/79 (50.63%), Postives = 57/79 (72.15%), Query Frame = 3
Query:  417 VGYSSPAESGMRADLGLSVTQYSVFGSVLTFGGIIGSLVNGKIADVTGRRGAMWLSELFCIGGWLAIAFSKDVWSLYLG 653
            VG+SS A++G+  DL LSV +YS+FGS+LT GG+IG++ +GK+ADV GR+  M   E FCI GWL +A +++   L  G
Sbjct:   76 VGFSSGAQAGITKDLSLSVAEYSMFGSILTLGGLIGAVFSGKVADVLGRKRTMLFCEFFCITGWLCVALAQNAMWLDCG 154          
BLAST of CX286986 vs. ExPASy Swiss-Prot
Match: EDL15_ARATH (Sugar transporter ERD6-like 15 OS=Arabidopsis thaliana GN=At4g04760 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.182e-16
Identity = 37/79 (46.84%), Postives = 56/79 (70.89%), Query Frame = 3
Query:  417 VGYSSPAESGMRADLGLSVTQYSVFGSVLTFGGIIGSLVNGKIADVTGRRGAMWLSELFCIGGWLAIAFSKDVWSLYLG 653
            +GYS+P ++ +  DL LS+  YS+FGS+LT G I+G+L+ GK+ D+ GR   +W++ +  + GW AIAF+K VW L LG
Sbjct:   49 IGYSAPTQTSIMKDLNLSIADYSLFGSILTVGLILGALICGKLTDLVGRVKTIWITNILFVIGWFAIAFAKGVWLLDLG 127          
BLAST of CX286986 vs. ExPASy Swiss-Prot
Match: ERDL2_ARATH (Sugar transporter ERD6-like 2 OS=Arabidopsis thaliana GN=SUGTL3 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.544e-16
Identity = 40/79 (50.63%), Postives = 57/79 (72.15%), Query Frame = 3
Query:  417 VGYSSPAESGMRADLGLSVTQYSVFGSVLTFGGIIGSLVNGKIADVTGRRGAMWLSELFCIGGWLAIAFSKDVWSLYLG 653
            + YSSPA+S +  +LGLSV  YS F SV+T GG+I ++ +GKI+ + GRR  MW+S++ CI GWLA+AF+ D+  L  G
Sbjct:   43 MSYSSPAQSKIMEELGLSVADYSFFTSVMTLGGMITAVFSGKISALVGRRQTMWISDVCCIFGWLAVAFAHDIIMLNTG 121          
The following BLAST results are available for this feature:
BLAST of CX286986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
ERDL3_ARATH1.220e-2154.76Sugar transporter ERD6-like 3 OS=Arabidopsis thali... [more]
EDL13_ARATH8.746e-2053.85Putative sugar transporter ERD6-like 13 OS=Arabido... [more]
ERDL7_ARATH2.545e-1955.13Sugar transporter ERD6-like 7 OS=Arabidopsis thali... [more]
EDL16_ARATH1.069e-1750.63Sugar transporter ERD6-like 16 OS=Arabidopsis thal... [more]
ERDL1_ARATH2.382e-1753.16Sugar transporter ERD6-like 1 OS=Arabidopsis thali... [more]
ERDL5_ARATH3.111e-1756.34Sugar transporter ERD6-like 5 OS=Arabidopsis thali... [more]
EDL17_ARATH4.063e-1753.85Sugar transporter ERD6-like 17 OS=Arabidopsis thal... [more]
ERD6_ARATH5.306e-1750.63Sugar transporter ERD6 OS=Arabidopsis thaliana GN=... [more]
EDL15_ARATH1.182e-1646.84Sugar transporter ERD6-like 15 OS=Arabidopsis thal... [more]
ERDL2_ARATH1.544e-1650.63Sugar transporter ERD6-like 2 OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionC01003C11SK Veg1 Citrus clementina cDNA clone C01003C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286986 ID=CX286986; Name=CX286986; organism=Citrus clementina; type=EST; length=654bp
CTCGTGCCGAATTCGGCACGAGGCTCAAGAAAAATAATGATGGAGACATC
AGAAAGCTTGGAGGAAGGACTAATTCCGAATCCTCCACTTCTTGAGCCAA
TGCCTATGATCACCAATGAAATTGGTAATGGCAGTGGCATGTCTGAAAGT
GATTTTTCTACTACACCTGCTGTTGTTTTCAGCACCTTGGTGGCCATATG
CGGCTCATTTACTTATGGCTGTGCTGTAAGATCCATTGCTGTTTTTTTGC
TGTCAGAGCAAGTCAATACATTTTTCTTGCAAGATTAATCTCTAAATGCT
TGAAGATAGGAGGCTTTCAGGAAGCAGTCTTGAGTGGAATCACTTTCATC
ATAAGCCACTAGTCAAAATATTAGCTTTTCATTGACCGCAATAGATTGAT
TGATTGTTGTTTTCAGGTTGGATATTCATCACCTGCTGAGTCTGGAATGA
GGGCAGACCTGGGACTCTCAGTGACACAATACTCAGTTTTTGGTTCAGTA
TTGACATTTGGAGGAATAATAGGTTCATTAGTAAATGGGAAAATAGCAGA
CGTCACTGGTCGAAGAGGTGCAATGTGGCTTTCTGAGTTATTCTGTATTG
GTGGGTGGCTGGCAATAGCATTCTCAAAGGATGTTTGGTCACTATATCTT
GGAC
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