CX286998
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX286998 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2) HSP 1 Score: 168.318 bits (425), Expect = 2.689e-41 Identity = 94/162 (58.02%), Postives = 104/162 (64.20%), Query Frame = 1 Query: 121 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVTSNVTASNANSDTYGQAASNLVAGNDLEQTIQQIMD 606 MKLTVKTLKGSHFEIRV P+DT+MAVKKNIED Q KDNYPCGQQLLIHNGKVLKDETTL +NKV+E+GFLVVMLSKSKT SAG N T A SDTYGQAAS LV+G+ +EQ +QQIM+ Sbjct: 1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLVENKVTEEGFLVVMLSKSKTASSAG-------PSSTQPTSTTTSTISSTTLAAPSTTQSIAVPASNSTPVQEQPTAQSDTYGQAASTLVSGSSIEQMVQQIME 155
BLAST of CX286998 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3) HSP 1 Score: 166.392 bits (420), Expect = 1.022e-40 Identity = 95/165 (57.58%), Postives = 107/165 (64.85%), Query Frame = 1 Query: 121 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVTSNVTASN---ANSDTYGQAASNLVAGNDLEQTIQQIMD 606 MKLTVKTLKGSHFEIRV PSDT+MAVKKNIED QGKDNYPCGQQLLIHNGKVLKDET+L +NKV+E+GFLVVMLSKSK+ GSAG S + A A +DTYGQAAS LV+G+ LEQ +QQIM+ Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVVMLSKSKSGGSAGQASVQTSSVSQPVSATTSSTKPAAPSTTQSSPVP--------ASPIPAQEQPAAQTDTYGQAASTLVSGSSLEQMVQQIME 157
BLAST of CX286998 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2) HSP 1 Score: 114.775 bits (286), Expect = 3.528e-25 Identity = 69/162 (42.59%), Postives = 88/162 (54.32%), Query Frame = 1 Query: 121 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVTSNVTASNANSDTYGQAASNLVAGNDLEQTIQQIMD 606 MK+ VKTL GS+FEI V+P+D V VK IE V+G + YP +Q+LIH GKVLKDETTL +N V E+ F+V+MLSK+K A + TA++ +D YGQAASNLVAG LE T+QQI+D Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLEENNVVENSFIVIMLSKTK----ASPSGASTASAPAPSATQPQTVATPQVSAPTASVPVPTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQILD 157
BLAST of CX286998 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2) HSP 1 Score: 112.079 bits (279), Expect = 2.287e-24 Identity = 52/83 (62.65%), Postives = 68/83 (81.93%), Query Frame = 1 Query: 121 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGSA 369 MK+ VKTLKG+HFEI V+P D+V+ VKKNIE VQG D YP +Q+LIH GKVLKDETT+ +NKV+E+ F+V+M++KSK +A Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIEENKVAENSFIVIMMNKSKPASAA 83
BLAST of CX286998 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2) HSP 1 Score: 106.301 bits (264), Expect = 1.255e-22 Identity = 68/169 (40.24%), Postives = 88/169 (52.07%), Query Frame = 1 Query: 121 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVTSNVTAS-------NANSDTYGQAASNLVAGNDLEQTIQQIMD 606 MK++VKTLKGS F+I V + V VK+ IE QG+ YP QQ+LIH GKVLKD+TTL +NKV E+ FLV+ML + K GS+ T TAS ++ +D YGQA SNLVAG++LE TIQ I++ Sbjct: 1 MKISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLDENKVLENSFLVIMLRQGK--GSSSSAPATSKAPSNQAPPTQTVPAAPASQAPVAPATTVPVTVSAPTPTATASPAPAVAVSSEADNYGQATSNLVAGSNLEATIQSILE 167
BLAST of CX286998 vs. ExPASy Swiss-Prot
Match: RD23B_RAT (UV excision repair protein RAD23 homolog B OS=Rattus norvegicus GN=Rad23b PE=1 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 6.241e-14 Identity = 37/83 (44.58%), Postives = 57/83 (68.67%), Query Frame = 1 Query: 121 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGSA 369 M++T+KTL+ F+I + P +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L + K+ E F+VVM++K K + SA Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPKAVTSA 83
BLAST of CX286998 vs. ExPASy Swiss-Prot
Match: RD23B_MOUSE (UV excision repair protein RAD23 homolog B OS=Mus musculus GN=Rad23b PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.390e-13 Identity = 36/83 (43.37%), Postives = 57/83 (68.67%), Query Frame = 1 Query: 121 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGSA 369 M++T+KTL+ F+I + P +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L + K+ E F+VVM++K K + +A Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPKAVTTA 83
BLAST of CX286998 vs. ExPASy Swiss-Prot
Match: RD23B_HUMAN (UV excision repair protein RAD23 homolog B OS=Homo sapiens GN=RAD23B PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.372e-13 Identity = 35/82 (42.68%), Postives = 56/82 (68.29%), Query Frame = 1 Query: 121 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGS 366 M++T+KTL+ F+I + P +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L + K+ E F+VVM++K K + + Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 82
BLAST of CX286998 vs. ExPASy Swiss-Prot
Match: RD23B_BOVIN (UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 6.901e-13 Identity = 35/80 (43.75%), Postives = 54/80 (67.50%), Query Frame = 1 Query: 121 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTL 360 M +T+KTL+ F+I + P +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L + K+ E F+VVM++K K + Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVRALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAV 80
BLAST of CX286998 vs. ExPASy Swiss-Prot
Match: RD23A_BOVIN (UV excision repair protein RAD23 homolog A OS=Bos taurus GN=RAD23A PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.622e-12 Identity = 32/77 (41.56%), Postives = 54/77 (70.13%), Query Frame = 1 Query: 127 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 357 +T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + D ++ E F+VVM++K+KT Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKAKT 81 The following BLAST results are available for this feature:
BLAST of CX286998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 12
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Sequences
The
following sequences are available for this feature:
EST sequence >CX286998 ID=CX286998; Name=CX286998; organism=Citrus clementina; type=EST; length=608bpback to top |