CX287008 | Citrus Genome Database

Overview


Name	CX287008
Unique Name	CX287008
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	561

Libraries


Library Name	Type
Veg1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig13314	contig	Ccv1_Contig13314:128..691.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

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BLAST of CX287008 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.074e-67
Identity = 126/187 (67.38%), Postives = 149/187 (79.68%), Query Frame = 3

Query:    3 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMXXXXXXXXXXXXXXXXXLGQQFLYGQAPPAII-PQAGFGYQQQLVPG 560
            NG KFDD+EWYVG+AQKKSERE EL+ ++EQ +KE  DKFQ  NLY+KNL  SI DEKLKE+FS FGT+TS KVMRDP+G SKGSGFVAF+TPEEA+ A+++++GKMI SKPLYVA+AQRKE+RR RLQAQFSQ+RPVAM                 +GQQ  YGQAPPA+I PQ G+GYQQQLVPG
Sbjct:  276 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSVGPRMPVYPPGGPGIGQQMFYGQAPPAMIPPQPGYGYQQQLVPG 462

HSP 2 Score: 95.5153 bits (236), Expect = 1.857e-19
Identity = 51/134 (38.06%), Postives = 74/134 (55.22%), Query Frame = 3

Query:    3 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 404
            NG   +D++ YVG   ++ ER+             T +K +  N+Y+KNL +S  D+ LK  F E+G ITS  VM+D  G SKG GFV F   ++A+RA+  +NG     K  YV  AQ+K ER   L+ ++ Q
Sbjct:  185 NGMLLNDKQVYVGPFLRRQERDS------------TANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQ 306

HSP 3 Score: 79.7221 bits (195), Expect = 1.055e-14
Identity = 38/81 (46.91%), Postives = 54/81 (66.67%), Query Frame = 3

Query:  132 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 374
            N++IKNL +SID + L + FS FG I SCKV  D SG SKG GFV ++  E A +A+ ++NG ++  K +YV    R++ER
Sbjct:  125 NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQER 205

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BLAST of CX287008 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 3.971e-46
Identity = 101/189 (53.44%), Postives = 126/189 (66.67%), Query Frame = 3

Query:    3 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR-PVAMXXXXXXXXXXXXXXXXXLGQQFLYGQAPPAIIPQ--AGFGYQQQLVPG 560
            NG    D   YVG+AQKKSERE+EL+ +FEQ      +K QG NLY+KNL DS+DDEKLKE+FSE+G +TS KVM +P G+S+G GFVA+S PEEA RAL+EMNGKMI  KPLY+A+AQRKE+RRA LQA FSQ+R P  M                   Q    GQ   +++P    G+G+Q Q +PG
Sbjct:  290 NGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQIRAPGPMSGFHHPPGGPMPGPP----QHMYVGQNGASMVPSQPIGYGFQPQFMPG 474

HSP 2 Score: 84.3445 bits (207), Expect = 4.282e-16
Identity = 49/136 (36.03%), Postives = 75/136 (55.15%), Query Frame = 3

Query:    3 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 410
            NG   +D++ +VG   ++ ER ++          E     +  N+Y+KNL   I +++L++ F +FG I+S  VMRD SG S+  GFV F   E A+ A+ +MNG  +    LYV  AQ+K ER   L+ +F Q R
Sbjct:  197 NGMLMNDKQVFVGHFIRRQERARD----------ENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQER 322

HSP 3 Score: 76.2554 bits (186), Expect = 1.166e-13
Identity = 39/81 (48.15%), Postives = 53/81 (65.43%), Query Frame = 3

Query:  132 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 374
            N++IKNL  SID++ L E FS FGTI SCKV  D +G SKG GFV F   E A  A+ ++NG ++  K ++V    R++ER
Sbjct:  137 NIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQER 217

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BLAST of CX287008 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 1.196e-42
Identity = 95/194 (48.97%), Postives = 123/194 (63.40%), Query Frame = 3

Query:    3 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR------PVAMXXXXXXXXXXXXXXXXXLGQQFLYGQAPPAIIPQ--AGFGYQQQLVPG 560
            NG    +   YVG+AQKKS+RE+EL+ +FEQ      +K QG NLY+KNL DS++DEKLKE+FSE+G +TSCKVM +  G+S+G GFVA+S PEEA  A+ EMNGKMI  KPLYVA+AQRKEER+A LQ+ F+Q+R      PV                       F+ G     ++P    G+GYQ Q +PG
Sbjct:  286 NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFI-GHNGQGLVPSQPMGYGYQVQFMPG 478

HSP 2 Score: 86.6557 bits (213), Expect = 8.628e-17
Identity = 50/136 (36.76%), Postives = 77/136 (56.62%), Query Frame = 3

Query:    3 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 410
            NG   +D++ +VG   ++ +R +   G         V  F   N+Y+KNL   I D++LK+ F ++G I+S  VM+D SG S+  GFV F +PE A+ A+ +MNG  +    LYV  AQ+K +R   L+ +F Q R
Sbjct:  193 NGMLLNDKQVFVGHFVRRQDRARSESG--------AVPSFT--NVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQER 318

HSP 3 Score: 74.3294 bits (181), Expect = 4.431e-13
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 3

Query:  132 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 374
            N++IKNL  SID++ L E FS FGTI SCKV  D  G SKG GFV F   E A  A+ ++NG ++  K ++V    R+++R
Sbjct:  133 NVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDR 213

[Close]

BLAST of CX287008 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.616e-39
Identity = 80/131 (61.07%), Postives = 102/131 (77.86%), Query Frame = 3

Query:    3 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQ 395
            NGK+F  +  YVG+AQKK ER +ELK Q+EQ   E + KFQG+NL+IKNL DSIDDEKLKE F+ +GTITS +VMRD  G SKG GFV FS+PEEA++A+ E N +++  KPLYVA+AQRK+ RR++L  Q
Sbjct:  292 NGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQ 422

HSP 2 Score: 80.8777 bits (198), Expect = 4.734e-15
Identity = 50/136 (36.76%), Postives = 72/136 (52.94%), Query Frame = 3

Query:    3 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 410
            NG   +  E YV     K +R  +L    E+A      K    N+Y+KN+     DE+ ++LFS++G I S  + +D  G  KG GFV F     A++A+ E+NGK   S+ LYV  AQ+K ER   L+ Q+ Q R
Sbjct:  199 NGMLMNGLEVYVAMHVPKKDRISKL----EEA------KANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYR 324

HSP 3 Score: 70.4774 bits (171), Expect = 6.398e-12
Identity = 35/86 (40.70%), Postives = 55/86 (63.95%), Query Frame = 3

Query:  132 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQ 389
            N++IKNL  +ID++ L E FS FG + SCKV  D +G S+G GFV F    +A  A+  +NG ++    +YVA+   K++R ++L+
Sbjct:  139 NIFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLE 224

[Close]

BLAST of CX287008 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.110e-39
Identity = 75/130 (57.69%), Postives = 105/130 (80.77%), Query Frame = 3

Query:   15 FDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 404
            F  ++ +V +AQKKSERE+EL+  +E A  E + KFQG+NLY+KN+ +S DDE+L+E F+ FG ITSCK+MR PSG+S+G GFV +S PEEA++A++EMNGKM+ ++PLYVA+AQRK+ RR +L+AQ  Q
Sbjct:  292 FKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLREEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALAQRKDVRRQQLEAQIMQ 421

HSP 2 Score: 83.1889 bits (204), Expect = 9.539e-16
Identity = 47/132 (35.61%), Postives = 74/132 (56.06%), Query Frame = 3

Query:    3 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 398
            NG   +D++ YVG    + ER+ +++        ET   F   N+Y KN+   + D++ ++LF++FG ITSC + RD  G SKG GFV F    EA +A+ E++      + L+VA AQ+K ER   L+  +
Sbjct:  195 NGMLLNDKKVYVGHHIPRKERQAKIE--------ETRANFT--NVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFVARAQKKSEREEELRRSY 316

[Close]

BLAST of CX287008 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.110e-39
Identity = 78/134 (58.21%), Postives = 107/134 (79.85%), Query Frame = 3

Query:    3 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 404
            NGK+ + ++ YVG+AQKK ER+ ELK +FEQ  ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM +  G SKG GFV FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L  Q+ Q
Sbjct:  252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 384

HSP 2 Score: 115.546 bits (288), Expect = 1.734e-25
Identity = 61/136 (44.85%), Postives = 86/136 (63.24%), Query Frame = 3

Query:    3 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 410
            NG   +DR+ +VG+ + + ERE EL  + ++            N+YIKN G+ +DDE+LKELF +FG   S KVM D SG SKG GFV+F   E+A +A+ EMNGK +  K +YV  AQ+K ER+  L+ +F QM+
Sbjct:  159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284

HSP 3 Score: 78.5666 bits (192), Expect = 2.350e-14
Identity = 42/95 (44.21%), Postives = 61/95 (64.21%), Query Frame = 3

Query:  132 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 416
            N++IKNL  SID++ L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++  + ++V   + ++ER A L A+  +   V
Sbjct:  100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193

[Close]

BLAST of CX287008 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.110e-39
Identity = 78/134 (58.21%), Postives = 107/134 (79.85%), Query Frame = 3

Query:    3 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 404
            NGK+ + ++ YVG+AQKK ER+ ELK +FEQ  ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM +  G SKG GFV FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L  Q+ Q
Sbjct:  252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 384

HSP 2 Score: 114.39 bits (285), Expect = 3.864e-25
Identity = 60/136 (44.12%), Postives = 86/136 (63.24%), Query Frame = 3

Query:    3 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 410
            NG   +DR+ +VG+ + + ERE EL  + ++            N+YIKN G+ +DDE+LK+LF +FG   S KVM D SG SKG GFV+F   E+A +A+ EMNGK +  K +YV  AQ+K ER+  L+ +F QM+
Sbjct:  159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284

HSP 3 Score: 78.5666 bits (192), Expect = 2.350e-14
Identity = 42/95 (44.21%), Postives = 61/95 (64.21%), Query Frame = 3

Query:  132 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 416
            N++IKNL  SID++ L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++  + ++V   + ++ER A L A+  +   V
Sbjct:  100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193

[Close]

BLAST of CX287008 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.110e-39
Identity = 78/134 (58.21%), Postives = 107/134 (79.85%), Query Frame = 3

Query:    3 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 404
            NGK+ + ++ YVG+AQKK ER+ ELK +FEQ  ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM +  G SKG GFV FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L  Q+ Q
Sbjct:  252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 384

HSP 2 Score: 115.161 bits (287), Expect = 2.265e-25
Identity = 61/136 (44.85%), Postives = 86/136 (63.24%), Query Frame = 3

Query:    3 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 410
            NG   +DR+ +VG+ + + ERE EL  + ++            N+YIKN G+ +DDE+LKELF +FG   S KVM D SG SKG GFV+F   E+A +A+ EMNGK +  K +YV  AQ+K ER+  L+ +F QM+
Sbjct:  159 NGMLLNDRKVFVGRFKSQKEREAELGARAKEFT----------NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284

HSP 3 Score: 78.1814 bits (191), Expect = 3.069e-14
Identity = 42/95 (44.21%), Postives = 61/95 (64.21%), Query Frame = 3

Query:  132 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 416
            N++IKNL  SID++ L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++  + ++V   + ++ER A L A+  +   V
Sbjct:  100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGARAKEFTNV 193

[Close]

BLAST of CX287008 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 2.110e-39
Identity = 78/134 (58.21%), Postives = 107/134 (79.85%), Query Frame = 3

Query:    3 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 404
            NGK+ + ++ YVG+AQKK ER+ ELK +FEQ  ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM +  G SKG GFV FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L  Q+ Q
Sbjct:  252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 384

HSP 2 Score: 114.39 bits (285), Expect = 3.864e-25
Identity = 60/136 (44.12%), Postives = 86/136 (63.24%), Query Frame = 3

Query:    3 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 410
            NG   +DR+ +VG+ + + ERE EL  + ++            N+YIKN G+ +DDE+LK+LF +FG   S KVM D SG SKG GFV+F   E+A +A+ EMNGK +  K +YV  AQ+K ER+  L+ +F QM+
Sbjct:  159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284

HSP 3 Score: 78.5666 bits (192), Expect = 2.350e-14
Identity = 42/95 (44.21%), Postives = 61/95 (64.21%), Query Frame = 3

Query:  132 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 416
            N++IKNL  SID++ L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++  + ++V   + ++ER A L A+  +   V
Sbjct:  100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193

[Close]

BLAST of CX287008 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.110e-39
Identity = 78/134 (58.21%), Postives = 107/134 (79.85%), Query Frame = 3

Query:    3 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 404
            NGK+ + ++ YVG+AQKK ER+ ELK +FEQ  ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM +  G SKG GFV FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L  Q+ Q
Sbjct:  252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 384

HSP 2 Score: 114.39 bits (285), Expect = 3.864e-25
Identity = 60/136 (44.12%), Postives = 86/136 (63.24%), Query Frame = 3

Query:    3 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 410
            NG   +DR+ +VG+ + + ERE EL  + ++            N+YIKN G+ +DDE+LK+LF +FG   S KVM D SG SKG GFV+F   E+A +A+ EMNGK +  K +YV  AQ+K ER+  L+ +F QM+
Sbjct:  159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284

HSP 3 Score: 78.5666 bits (192), Expect = 2.350e-14
Identity = 42/95 (44.21%), Postives = 61/95 (64.21%), Query Frame = 3

Query:  132 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 416
            N++IKNL  SID++ L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++  + ++V   + ++ER A L A+  +   V
Sbjct:  100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193

The following BLAST results are available for this feature:

BLAST of CX287008 vs. ExPASy Swiss-Prot

BLAST of CX287008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58


Match Name	E-value	Identity	Description
PABP2_ARATH	1.074e-67	67.38	Polyadenylate-binding protein 2 OS=Arabidopsis tha...	[more]
PABP3_ARATH	3.971e-46	53.44	Polyadenylate-binding protein 3 OS=Arabidopsis tha...	[more]
PABP5_ARATH	1.196e-42	48.97	Polyadenylate-binding protein 5 OS=Arabidopsis tha...	[more]
PABP_KLULA	1.616e-39	61.07	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_USTMA	2.110e-39	57.69	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP1_RAT	2.110e-39	58.21	Polyadenylate-binding protein 1 OS=Rattus norvegic...	[more]
PABP1_PONAB	2.110e-39	58.21	Polyadenylate-binding protein 1 OS=Pongo abelii GN...	[more]
PABP1_MOUSE	2.110e-39	58.21	Polyadenylate-binding protein 1 OS=Mus musculus GN...	[more]
PABP1_HUMAN	2.110e-39	58.21	Polyadenylate-binding protein 1 OS=Homo sapiens GN...	[more]
PABP1_BOVIN	2.110e-39	58.21	Polyadenylate-binding protein 1 OS=Bos taurus GN=P...	[more]

Pages

Properties


Property Name	Value
Genbank description	C01003E11SK Veg1 Citrus clementina cDNA clone C01003E11, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX287008 ID=CX287008; Name=CX287008; organism=Citrus clementina; type=EST; length=561bp
TTAATGGAAAGAAATTTGATGACAGAGAATGGTACGTTGGAAAAGCTCAG
AAAAAATCTGAAAGAGAACAAGAGCTAAAAGGGCAATTTGAGCAAGCCAT
GAAGGAAACCGTAGACAAATTCCAGGGTTTGAATTTGTATATCAAGAATT
TGGGTGATAGTATTGATGATGAAAAATTAAAGGAGTTATTTTCTGAATTT
GGCACAATTACTTCATGCAAGGTTATGCGTGATCCTAGTGGAATTAGTAA
GGGCTCTGGATTTGTGGCGTTTTCAACTCCTGAGGAAGCATCTCGAGCTC
TTGCAGAGATGAATGGTAAAATGATTGTTAGCAAGCCTCTTTATGTTGCT
GTTGCTCAGCGGAAAGAAGAGAGGAGGGCCAGGCTGCAGGCTCAGTTTTC
ACAAATGAGACCAGTAGCTATGGGTCCCTCGGTTCCTCCTCGTATGCCAA
TGTACCCACCTGGCCCTTCAGGCCTAGGGCAACAGTTTCTGTATGGCCAA
GCACCACCAGCAATAATTCCTCAAGCTGGATTTGGTTACCAGCAGCAACT
TGTTCCTGGAA