CX287013

Overview
NameCX287013
Unique NameCX287013
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length554
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14842 contig Ccv1_Contig14842:584..1137. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287013 vs. ExPASy Swiss-Prot
Match: SODF_SOYBN (Superoxide dismutase [Fe], chloroplastic OS=Glycine max GN=SODB PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.874e-33
Identity = 70/101 (69.31%), Postives = 76/101 (75.25%), Query Frame = -2
Query:  254 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWD-YSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKAPAT 553
            QFGSGWAWL Y+            P P E D  L+V+K+PNAVNPLVW  Y PLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSW++VS RLE AKA  T
Sbjct:  147 QFGSGWAWLAYRARKFDGENVANPPSPDE-DNKLVVLKSPNAVNPLVWGGYYPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWDAVSSRLEQAKALIT 246          
BLAST of CX287013 vs. ExPASy Swiss-Prot
Match: SODF_NICPL (Superoxide dismutase [Fe], chloroplastic (Fragment) OS=Nicotiana plumbaginifolia GN=SODB PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 8.653e-30
Identity = 63/97 (64.95%), Postives = 72/97 (74.23%), Query Frame = -2
Query:  263 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 553
            QFGSGWAWL YK                 ++K L +VKTPNA NPLV  Y+PLLTIDVWEHAYYLDFQNRRPDYIS+FM+KLVSWE+VS RL++A A
Sbjct:  122 QFGSGWAWLAYKP----------------EEKKLALVKTPNAENPLVLGYTPLLTIDVWEHAYYLDFQNRRPDYISIFMEKLVSWEAVSSRLKAATA 202          
BLAST of CX287013 vs. ExPASy Swiss-Prot
Match: SODF_ARATH (Superoxide dismutase [Fe], chloroplastic OS=Arabidopsis thaliana GN=SODB PE=1 SV=4)

HSP 1 Score: 120.168 bits (300), Expect = 6.856e-27
Identity = 61/97 (62.89%), Postives = 66/97 (68.04%), Query Frame = -2
Query:  263 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 553
            QFG+GWAWL Y                   ++ L VVKTPNAVNPLV    PLLTIDVWEHAYYLDFQNRRPDYI  FM  LVSWE+VS RLE+AKA
Sbjct:  131 QFGAGWAWLAYS------------------NEKLKVVKTPNAVNPLVLGSFPLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVSARLEAAKA 209          
BLAST of CX287013 vs. ExPASy Swiss-Prot
Match: SODF_PLEBO (Superoxide dismutase [Fe] OS=Plectonema boryanum GN=sodB PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.385e-19
Identity = 48/92 (52.17%), Postives = 57/92 (61.96%), Query Frame = -2
Query:  278 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 553
            QFGSGWAWLV                  +   +L V KTPNA NPLV    PLLT+DVWEHAYYLDFQN RP +I  F+D LV+W+ V++ L
Sbjct:  124 QFGSGWAWLV------------------DDGGTLKVTKTPNAENPLVHGQKPLLTLDVWEHAYYLDFQNARPAFIKNFLDNLVNWDFVAQNL 197          
BLAST of CX287013 vs. ExPASy Swiss-Prot
Match: SODF_SYNY3 (Superoxide dismutase [Fe] OS=Synechocystis sp. (strain PCC 6803) GN=sodB PE=1 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 1.808e-19
Identity = 48/95 (50.53%), Postives = 60/95 (63.16%), Query Frame = -2
Query:  269 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESA 553
            QFGSGWAWLV                    + +L V KT NA NP+    +PLLT+DVWEHAYYLD+QNRRPDYI+ F+ KLV+W+ V+  L +A
Sbjct:  123 QFGSGWAWLVLD------------------NGTLKVTKTGNAENPMTAGQTPLLTMDVWEHAYYLDYQNRRPDYIADFLGKLVNWDFVAANLAAA 199          
BLAST of CX287013 vs. ExPASy Swiss-Prot
Match: SODF_SYNE7 (Superoxide dismutase [Fe] OS=Synechococcus elongatus (strain PCC 7942) GN=sodB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.872e-19
Identity = 47/97 (48.45%), Postives = 58/97 (59.79%), Query Frame = -2
Query:  263 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 553
            QFGSGWAWLV                    + +L + KT NA  P+    +PLLTIDVWEHAYYLD+QNRRPDYIS F++KL +W+  S    +A A
Sbjct:  123 QFGSGWAWLVLD------------------NGTLKITKTGNADTPIAHGQTPLLTIDVWEHAYYLDYQNRRPDYISTFVEKLANWDFASANYAAAIA 201          
BLAST of CX287013 vs. ExPASy Swiss-Prot
Match: SODF_RHOCA (Superoxide dismutase [Fe] OS=Rhodobacter capsulatus GN=sodB PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.975e-19
Identity = 43/92 (46.74%), Postives = 59/92 (64.13%), Query Frame = -2
Query:  278 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 553
            QFGSGWAWLV                  + D +L + KT N VNPL +  + LL  DVWEH+YY+DF+N+RP Y++ F+DKLV+WE+V+ R+
Sbjct:  126 QFGSGWAWLV-----------------KDSDGALKITKTENGVNPLCFGQTALLGCDVWEHSYYIDFRNKRPAYLTNFLDKLVNWENVASRM 200          
BLAST of CX287013 vs. ExPASy Swiss-Prot
Match: SODF_RICCN (Superoxide dismutase [Mn/Fe] OS=Rickettsia conorii GN=sodB PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.771e-17
Identity = 38/92 (41.30%), Postives = 53/92 (57.61%), Query Frame = -2
Query:  278 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 553
            QFGSGWAWL+Y                   D  L ++KT NA  P+     PLL  DVWEHAYY+D++N+RPDY+ +F+  +++W+ V   L
Sbjct:  134 QFGSGWAWLIYH------------------DNRLQIIKTANAGTPIAHGMKPLLACDVWEHAYYIDYRNKRPDYVDIFIKHMINWKFVEDNL 207          
BLAST of CX287013 vs. ExPASy Swiss-Prot
Match: SODF_RICBR (Superoxide dismutase [Mn/Fe] OS=Rickettsia bellii (strain RML369-C) GN=sodB PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.771e-17
Identity = 40/92 (43.48%), Postives = 53/92 (57.61%), Query Frame = -2
Query:  278 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 553
            QFGSGWAWLVY                   +  L +VKT NA  P+     PLL  DVWEHAYY+D++N+RPDY+ +F+  +++WE V   L
Sbjct:  134 QFGSGWAWLVYH------------------NNRLQIVKTANAGTPIANGMQPLLACDVWEHAYYIDYRNKRPDYVDIFIKHMINWEFVENNL 207          
BLAST of CX287013 vs. ExPASy Swiss-Prot
Match: SODF_RHIME (Superoxide dismutase [Mn] OS=Rhizobium meliloti GN=sodB PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 3.771e-17
Identity = 41/95 (43.16%), Postives = 57/95 (60.00%), Query Frame = -2
Query:  269 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESA 553
            QFGSGWAWL                  S K+  L + KTPN  NPLV   +P+L +DVWEH+YY+D++N RP Y+  F+D L++W+ V +  E+A
Sbjct:  122 QFGSGWAWL------------------SVKNGKLEISKTPNGENPLVHGATPILGVDVWEHSYYIDYRNARPKYLEAFVDNLINWDYVLELYEAA 198          
The following BLAST results are available for this feature:
BLAST of CX287013 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
SODF_SOYBN2.874e-3369.31Superoxide dismutase [Fe], chloroplastic OS=Glycin... [more]
SODF_NICPL8.653e-3064.95Superoxide dismutase [Fe], chloroplastic (Fragment... [more]
SODF_ARATH6.856e-2762.89Superoxide dismutase [Fe], chloroplastic OS=Arabid... [more]
SODF_PLEBO1.385e-1952.17Superoxide dismutase [Fe] OS=Plectonema boryanum G... [more]
SODF_SYNY31.808e-1950.53Superoxide dismutase [Fe] OS=Synechocystis sp. (st... [more]
SODF_SYNE76.872e-1948.45Superoxide dismutase [Fe] OS=Synechococcus elongat... [more]
SODF_RHOCA8.975e-1946.74Superoxide dismutase [Fe] OS=Rhodobacter capsulatu... [more]
SODF_RICCN3.771e-1741.30Superoxide dismutase [Mn/Fe] OS=Rickettsia conorii... [more]
SODF_RICBR3.771e-1743.48Superoxide dismutase [Mn/Fe] OS=Rickettsia bellii ... [more]
SODF_RHIME3.771e-1743.16Superoxide dismutase [Mn] OS=Rhizobium meliloti GN... [more]

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Properties
Property NameValue
Genbank descriptionC01003F04SK Veg1 Citrus clementina cDNA clone C01003F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287013 ID=CX287013; Name=CX287013; organism=Citrus clementina; type=EST; length=554bp
GCACGAGGGAAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTACTTTGA
TAGGTTTTATTATACCCTGATTGTTATAAGAAGAAACCAACACTTTGACA
ATAGAGATTACTAATCACAAAGTAATGTGTACCAAAGACCTAACTATTTT
TATTGTTCAGCAAAGTATCATCAGCACAACATAGTGTTGCTACCAAGCAG
CTTATTATTTATTTTCTCTTCATCTTCCTTCATCATTCTTCCATTTCAAT
CTAGGTAGCTGGAGCTTTGGCTGATTCCAGTCTTTTACTTACTGATTCCC
ATGATACAAGCTTATCCATGAAAACTGATATGTAATCAGGTCGTCGATTC
TGAAAGTCGAGGTAATAAGCATGCTCCCATACATCAATAGTAAGGAGCGG
CGAGTAATCCCAGACAAGAGGATTGACAGCATTGGGAGTCTTCACCACTA
AAAGGCTCTTGTCCTTCTCCGATGGAAGAGGATTCACCGCATTAGCCACA
TCAGCTCTATTATTGGCTTTGTATACAAGCCAGGCCCAACCAGAACCAAA
CTGA
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