CX287014

Overview
NameCX287014
Unique NameCX287014
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig21 contig Ccv1_Contig21:1..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287014 vs. ExPASy Swiss-Prot
Match: DME_ARATH (Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1 SV=2)

HSP 1 Score: 259.225 bits (661), Expect = 1.343e-68
Identity = 131/213 (61.50%), Postives = 155/213 (72.77%), Query Frame = 1
Query:   25 LPLPLTH--ATDLPVGKLEIAVNNCXXXXXXXXXXXXXRVQVSENDIEDTFC-EDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGT 654
            LPLPL    A+  P  +      NC               +++E+DIED +  EDP+EIPTIKLN+++F  TL+ +M+ N+ELQEGDMSKALVAL     SIP PKLKN+SRLRTEHQVYELPDSH LL GM+KREPDDP  YLLAIWTPGETANS QPPE +C  +  GKMC ++TC  CNS+RE+  Q VRGT+LIPCRTAMRGSFPLNGT
Sbjct: 1689 LPLPLEKSLASGAPSNR-----ENCEPIIEEPASPGQECTEITESDIEDAYYNEDPDEIPTIKLNIEQFGMTLREHMERNMELQEGDMSKALVALHPTTTSIPTPKLKNISRLRTEHQVYELPDSHRLLDGMDKREPDDPSPYLLAIWTPGETANSAQPPEQKCGGKASGKMCFDETCSECNSLREANSQTVRGTLLIPCRTAMRGSFPLNGT 1896          
BLAST of CX287014 vs. ExPASy Swiss-Prot
Match: ROS1_ARATH (Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 SV=2)

HSP 1 Score: 255.758 bits (652), Expect = 1.485e-67
Identity = 123/172 (71.51%), Postives = 142/172 (82.56%), Query Frame = 1
Query:  139 QVSENDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGT 654
            +VS  DIE+ F EDPEEIPTI+LNM  FT  L+  M+ N ELQ+G+MS ALVALTA  AS+P PKLKN+S+LRTEH+VYELPD HPLL  +EKREPDDP  YLLAIWTPGETA+SIQP  S C  Q +G +CDE+TCFSCNS++E+  QIVRGTILIPCRTAMRGSFPLNGT
Sbjct: 1128 EVSIADIEEAFFEDPEEIPTIRLNMDAFTSNLKKIMEHNKELQDGNMSSALVALTAETASLPMPKLKNISQLRTEHRVYELPDEHPLLAQLEKREPDDPCSYLLAIWTPGETADSIQPSVSTCIFQANGMLCDEETCFSCNSIKETRSQIVRGTILIPCRTAMRGSFPLNGT 1299          
BLAST of CX287014 vs. ExPASy Swiss-Prot
Match: DML2_ARATH (DEMETER-like protein 2 OS=Arabidopsis thaliana GN=DML2 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.074e-41
Identity = 95/182 (52.20%), Postives = 113/182 (62.09%), Query Frame = 1
Query:  148 ENDIEDT--------FCEDPEE----IPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCS-SQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGT 654
            E+DIED           EDP E    IPTI LN +  T        + +  +E   S  LV L+  AA+IP  KLK   +LRTEH V+ELPD H +L G E+RE +D   YLLAIWTPGET NSIQPP+ RC+  + +  +C+E  CF CN  RE E Q VRGTILIPCRTAMRG FPLNGT
Sbjct: 1040 EHDIEDYPRDKNNVGTSEDPWENKDVIPTIILNKEAGTS------HDLVVNKEAGTSHDLVVLSTYAAAIPRRKLKIKEKLRTEHHVFELPDHHSILEGFERREAEDIVPYLLAIWTPGETVNSIQPPKQRCALFESNNTLCNENKCFQCNKTREEESQTVRGTILIPCRTAMRGGFPLNGT 1215          
BLAST of CX287014 vs. ExPASy Swiss-Prot
Match: DML3_ARATH (DEMETER-like protein 3 OS=Arabidopsis thaliana GN=DML3 PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.658e-34
Identity = 83/184 (45.11%), Postives = 113/184 (61.41%), Query Frame = 1
Query:  133 RVQVSEN-DIEDT----FCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGD--MSKALVALTAGAASIPAP---KLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGT 654
            R ++ E+ DIED       +    +P I  ++    +++++ +  +  +   D  +SKALV  T   A IP     K+K  +RLRTEH VY LPD+H LL   E+R+ DDP  YLLAIW PGET++S  PP+ +CSS +  K+C  K C  C ++RE    I RGTILIPCRTAMRG+FPLNGT
Sbjct:  766 RAEIPESTDIEDVPFMNLYQSYASVPKIDFDLDALKKSVEDALVISGRMSSSDEEISKALVIPTPENACIPIKPPRKMKYYNRLRTEHVVYVLPDNHELLHDFERRKLDDPSPYLLAIWQPGETSSSFVPPKKKCSS-DGSKLCKIKNCSYCWTIREQNSNIFRGTILIPCRTAMRGAFPLNGT 948          
The following BLAST results are available for this feature:
BLAST of CX287014 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
DME_ARATH1.343e-6861.50Transcriptional activator DEMETER OS=Arabidopsis t... [more]
ROS1_ARATH1.485e-6771.51Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 ... [more]
DML2_ARATH9.074e-4152.20DEMETER-like protein 2 OS=Arabidopsis thaliana GN=... [more]
DML3_ARATH1.658e-3445.11DEMETER-like protein 3 OS=Arabidopsis thaliana GN=... [more]
back to top
Properties
Property NameValue
Genbank descriptionC01003F05SK Veg1 Citrus clementina cDNA clone C01003F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287014 ID=CX287014; Name=CX287014; organism=Citrus clementina; type=EST; length=654bp
CTCGTGCCGAATTCGGCACGAGGACTACCTCTTCCTCTAACTCATGCAAC
CGATCTACCAGTCGGAAAATTAGAAATTGCTGTTAATAACTGTGAGCCTA
TCATTGAAGAGCCAGCGACACCAGAACCAGAGCGTGTACAAGTATCAGAA
AATGACATCGAAGATACATTCTGTGAAGATCCAGAAGAGATTCCTACTAT
CAAGCTTAACATGAAAGAGTTTACTCAGACCTTACAGAATTATATGCAAG
AGAATTTGGAGCTTCAAGAAGGTGATATGTCCAAAGCTTTAGTTGCTTTA
ACAGCGGGAGCAGCATCTATTCCTGCACCCAAGCTTAAGAATGTGAGTCG
TCTACGAACAGAACACCAAGTGTATGAACTTCCAGATTCACACCCTCTTT
TGCGTGGGATGGAAAAAAGAGAACCTGATGACCCAGGCAGATATCTTCTT
GCCATATGGACACCAGGTGAAACGGCAAATTCTATACAACCACCTGAAAG
TAGGTGCAGTTCTCAAGAGCATGGCAAAATGTGCGATGAGAAGACATGTT
TTTCATGCAACAGTGTTCGGGAATCAGAGTTTCAAATTGTTCGAGGGACC
ATTTTGATACCGTGTCGAACAGCAATGAGAGGAAGCTTTCCCCTAAATGG
CACA
back to top