CX287017

Overview
NameCX287017
Unique NameCX287017
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length514
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig307 contig Ccv1_Contig307:263..776. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287017 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 3.150e-41
Identity = 64/84 (76.19%), Postives = 75/84 (89.29%), Query Frame = 2
Query:    2 TKPPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKP 253
            T PP VCDNYY+CP+S TCCC++EYG  C+AWGCCPLE ATCCDDHYSCCPH+YPICNV+ GTCLM+KD+PL V+AL+RT AKP
Sbjct:  361 TPPPTVCDNYYTCPDSTTCCCIYEYGKYCYAWGCCPLEGATCCDDHYSCCPHEYPICNVQQGTCLMAKDSPLAVKALKRTLAKP 444          
BLAST of CX287017 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 4.115e-41
Identity = 62/90 (68.89%), Postives = 78/90 (86.67%), Query Frame = 2
Query:    5 KPPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQ 274
            KPP  CD+YY+CPESNTCCC+FEYG  CFAWGCCPLEAATCCDD+YSCCPH+YP+C++  GTCL+SK++P  V+AL+R PA P+W+ G +
Sbjct:  370 KPPTQCDSYYTCPESNTCCCLFEYGKYCFAWGCCPLEAATCCDDNYSCCPHEYPVCDLDQGTCLLSKNSPFSVKALKRKPATPFWSQGRK 459          
BLAST of CX287017 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.370e-36
Identity = 60/91 (65.93%), Postives = 69/91 (75.82%), Query Frame = 2
Query:    5 KPPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQG 277
            KPP  CD Y  C    TCCC+ ++  SCF+WGCCPLE ATCC+DHYSCCPHDYPICNVR GTC MSK NPLGV+A++R  A+P  A GN G
Sbjct:  251 KPPTECDEYSQCAVGTTCCCILQFRRSCFSWGCCPLEGATCCEDHYSCCPHDYPICNVRQGTCSMSKGNPLGVKAMKRILAQPIGAFGNGG 341          
BLAST of CX287017 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 5.574e-30
Identity = 51/81 (62.96%), Postives = 61/81 (75.31%), Query Frame = 2
Query:    8 PPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAK 250
            P  VCD+ +SCP  +TCCC F + N C  WGCCP+E ATCC DH SCCP DYP+CN RAGTC  SK++PL V+AL+RT AK
Sbjct:  382 PDHVCDDNFSCPAGSTCCCAFGFRNLCLVWGCCPVEGATCCKDHASCCPPDYPVCNTRAGTCSASKNSPLSVKALKRTLAK 462          
BLAST of CX287017 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 5.969e-24
Identity = 42/86 (48.84%), Postives = 52/86 (60.47%), Query Frame = 2
Query:    8 PPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRA----LRRTPAKP 253
            PP  CD Y  CP   TCCC +   N C  WGCCP+E ATCC DH +CCP +YP+CN +A TC  SK++P  +R      R  P +P
Sbjct:  391 PPQQCDRYSKCPAGTTCCCNYGIRNHCIVWGCCPVEGATCCKDHSTCCPKEYPVCNAKARTCSKSKNSPYNIRTPAAMARSVPEQP 476          
The following BLAST results are available for this feature:
BLAST of CX287017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ORYA_ORYSJ3.150e-4176.19Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
RD21A_ARATH4.115e-4168.89Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
CYSPL_SOLLC1.370e-3665.93Low-temperature-induced cysteine proteinase (Fragm... [more]
ORYB_ORYSJ5.574e-3062.96Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
CYSP1_ORYSJ5.969e-2448.84Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
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Properties
Property NameValue
Genbank descriptionC01003F08SK Veg1 Citrus clementina cDNA clone C01003F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287017 ID=CX287017; Name=CX287017; organism=Citrus clementina; type=EST; length=514bp
AACAAAGCCTCCTGCTGTGTGTGACAATTATTACTCTTGCCCTGAGAGCA
ACACTTGCTGCTGTGTCTTTGAGTATGGTAACTCTTGCTTTGCATGGGGA
TGCTGCCCGCTTGAGGCTGCCACCTGCTGTGATGACCACTATAGCTGCTG
CCCACATGACTATCCCATCTGTAATGTTCGTGCTGGGACCTGCTTGATGA
GCAAGGACAACCCATTGGGAGTGAGGGCATTACGACGCACCCCTGCTAAA
CCTTACTGGGCTCATGGAAATCAAGGTGGAAGTAGCAGTGCTTAATTATA
GTTGGCACTGTAAGAGCAGTGGAAGGCCGAAGGGAGGATGAAAATATTCG
TGCTTGTGAATGAGTTTCTCCCCGGCCTTAGTTCATTCTACTGCATTTCA
TTCCAAACGTTAATGTACCGGCAGGTGGATGGTCTGTTAAATATTTATTC
GGACGTTGGTTTGGTATATAGCGTTGTAAGTTATCTATCTGCGTTGAATC
TGAACAATGCACAA
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