CX287021

Overview
NameCX287021
Unique NameCX287021
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig22 contig Ccv1_Contig22:1..586. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287021 vs. ExPASy Swiss-Prot
Match: T2AG_ARATH (Transcription initiation factor IIA subunit 2 OS=Arabidopsis thaliana GN=TFIIA-S PE=2 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 3.234e-49
Identity = 95/106 (89.62%), Postives = 103/106 (97.17%), Query Frame = 2
Query:  260 MATFELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIKGHLHTYRFCDNVWTFILQDALFKSEELQETVGRVKIVACDSKLLSQ 577
            MATFELYRRSTIGMCLTETLDEMVQ+GTL+PELAIQVLVQFDKSMTEALE+QVK+KVSIKGHLHTYRFCDNVWTFILQDA+FKS++ QE V RVKIVACDSKLL+Q
Sbjct:    1 MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIKGHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106          
BLAST of CX287021 vs. ExPASy Swiss-Prot
Match: T2AG_ORYSJ (Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. japonica GN=TFIIAy PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.359e-47
Identity = 94/106 (88.68%), Postives = 99/106 (93.40%), Query Frame = 2
Query:  260 MATFELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIKGHLHTYRFCDNVWTFILQDALFKSEELQETVGRVKIVACDSKLLSQ 577
            MATFELYRRSTIGMCLTETLDEMV +GTL+PELAIQVLVQFDKSMTEALE QVKSKVSIKGHLHTYRFCDNVWTFIL +A FK+EE  E VG+VKIVACDSKLLSQ
Sbjct:    1 MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIKGHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ 106          
BLAST of CX287021 vs. ExPASy Swiss-Prot
Match: T2AG_ORYSI (Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. indica GN=TFIIAy PE=3 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 1.359e-47
Identity = 94/106 (88.68%), Postives = 99/106 (93.40%), Query Frame = 2
Query:  260 MATFELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIKGHLHTYRFCDNVWTFILQDALFKSEELQETVGRVKIVACDSKLLSQ 577
            MATFELYRRSTIGMCLTETLDEMV +GTL+PELAIQVLVQFDKSMTEALE QVKSKVSIKGHLHTYRFCDNVWTFIL +A FK+EE  E VG+VKIVACDSKLLSQ
Sbjct:    1 MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIKGHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ 106          
BLAST of CX287021 vs. ExPASy Swiss-Prot
Match: T2AG_ONCMY (Transcription initiation factor IIA subunit 2 OS=Oncorhynchus mykiss GN=gtf2a2 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.253e-25
Identity = 52/99 (52.53%), Postives = 74/99 (74.75%), Query Frame = 2
Query:  269 FELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIKGHLHTYRFCDNVWTFILQDALFKSEELQETVGRVKIVACDSK 565
            ++LYR +T+G  L E+LDE++Q   +TP+LA+QVL+QFDK++  AL  +V+++V+ KG L+TYRFCDNVWTF+L D  F+       V +VKIVACD K
Sbjct:    3 YQLYRNTTLGNSLQESLDELIQTQQITPQLALQVLLQFDKAINTALANRVRNRVNFKGSLNTYRFCDNVWTFVLNDVEFREVTDLVKVDKVKIVACDGK 101          
BLAST of CX287021 vs. ExPASy Swiss-Prot
Match: T2AG_RAT (Transcription initiation factor IIA subunit 2 OS=Rattus norvegicus GN=Gtf2a2 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.254e-25
Identity = 51/99 (51.52%), Postives = 75/99 (75.76%), Query Frame = 2
Query:  269 FELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIKGHLHTYRFCDNVWTFILQDALFKSEELQETVGRVKIVACDSK 565
            ++LYR +T+G  L E+LDE++Q+  +TP+LA+QVL+QFDK++  AL  +V+++V+ +G L+TYRFCDNVWTF+L D  F+       V +VKIVACD K
Sbjct:    3 YQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINSALAQRVRNRVNFRGSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGK 101          
BLAST of CX287021 vs. ExPASy Swiss-Prot
Match: T2AG_PAROL (Transcription initiation factor IIA subunit 2 OS=Paralichthys olivaceus GN=gtf2a2 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.254e-25
Identity = 51/99 (51.52%), Postives = 75/99 (75.76%), Query Frame = 2
Query:  269 FELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIKGHLHTYRFCDNVWTFILQDALFKSEELQETVGRVKIVACDSK 565
            ++LYR +T+G  L E+LDE++Q   +TP+LA+QVL+QFDK++  AL ++V+++V+ +G L+TYRFCDNVWTF+L D  F+       V +VKIVACD K
Sbjct:    3 YQLYRNTTLGNSLQESLDELIQTQQITPQLALQVLLQFDKAINTALASRVRNRVNFRGSLNTYRFCDNVWTFVLNDVEFREVTDLVKVDKVKIVACDGK 101          
BLAST of CX287021 vs. ExPASy Swiss-Prot
Match: T2AG_MOUSE (Transcription initiation factor IIA subunit 2 OS=Mus musculus GN=Gtf2a2 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 7.254e-25
Identity = 51/99 (51.52%), Postives = 75/99 (75.76%), Query Frame = 2
Query:  269 FELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIKGHLHTYRFCDNVWTFILQDALFKSEELQETVGRVKIVACDSK 565
            ++LYR +T+G  L E+LDE++Q+  +TP+LA+QVL+QFDK++  AL  +V+++V+ +G L+TYRFCDNVWTF+L D  F+       V +VKIVACD K
Sbjct:    3 YQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINSALAQRVRNRVNFRGSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGK 101          
BLAST of CX287021 vs. ExPASy Swiss-Prot
Match: T2AG_HUMAN (Transcription initiation factor IIA subunit 2 OS=Homo sapiens GN=GTF2A2 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.474e-25
Identity = 51/99 (51.52%), Postives = 75/99 (75.76%), Query Frame = 2
Query:  269 FELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIKGHLHTYRFCDNVWTFILQDALFKSEELQETVGRVKIVACDSK 565
            ++LYR +T+G  L E+LDE++Q+  +TP+LA+QVL+QFDK++  AL  +V+++V+ +G L+TYRFCDNVWTF+L D  F+       V +VKIVACD K
Sbjct:    3 YQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFRGSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGK 101          
BLAST of CX287021 vs. ExPASy Swiss-Prot
Match: T2AG_DICDI (Transcription initiation factor IIA subunit 2 OS=Dictyostelium discoideum GN=gtf2a2 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.757e-24
Identity = 55/101 (54.46%), Postives = 76/101 (75.25%), Query Frame = 2
Query:  269 FELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIKGHLHTYRFCDNVWTFILQDALFKSEELQ-ETVGRVKIVACDSKL 568
            +ELYR+STIG  LT+TL+E++ N  ++  L  ++L QFDK++ EAL   VK+K + KG LHTYRFCD+VWTFIL++A FK+E  +   V RVKIVACD+ +
Sbjct:    8 YELYRKSTIGEALTDTLEELLINQYISNSLYQKILTQFDKTINEALSNTVKAKTTFKGSLHTYRFCDSVWTFILENAQFKTEANEIVKVDRVKIVACDANV 108          
BLAST of CX287021 vs. ExPASy Swiss-Prot
Match: T2AG_DROME (Transcription initiation factor IIA subunit 2 OS=Drosophila melanogaster GN=TfIIA-S PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.334e-23
Identity = 53/101 (52.48%), Postives = 73/101 (72.28%), Query Frame = 2
Query:  266 TFELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIK-GHLHTYRFCDNVWTFILQDALFKSEELQETVGRVKIVACDSK 565
            +++LYR +T+G  L E+LDE++Q G +TP LA +VL+QFDKS+  AL  +VK++V+ K G L+TYRFCDNVWT +L D  F+       V +VKIVACD K
Sbjct:    2 SYQLYRNTTLGNTLQESLDELIQYGQITPGLAFKVLLQFDKSINNALNQRVKARVTFKAGKLNTYRFCDNVWTLMLNDVEFREVHEIVKVDKVKIVACDGK 102          
The following BLAST results are available for this feature:
BLAST of CX287021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
T2AG_ARATH3.234e-4989.62Transcription initiation factor IIA subunit 2 OS=A... [more]
T2AG_ORYSJ1.359e-4788.68Transcription initiation factor IIA subunit 2 OS=O... [more]
T2AG_ORYSI1.359e-4788.68Transcription initiation factor IIA subunit 2 OS=O... [more]
T2AG_ONCMY4.253e-2552.53Transcription initiation factor IIA subunit 2 OS=O... [more]
T2AG_RAT7.254e-2551.52Transcription initiation factor IIA subunit 2 OS=R... [more]
T2AG_PAROL7.254e-2551.52Transcription initiation factor IIA subunit 2 OS=P... [more]
T2AG_MOUSE7.254e-2551.52Transcription initiation factor IIA subunit 2 OS=M... [more]
T2AG_HUMAN9.474e-2551.52Transcription initiation factor IIA subunit 2 OS=H... [more]
T2AG_DICDI2.757e-2454.46Transcription initiation factor IIA subunit 2 OS=D... [more]
T2AG_DROME2.334e-2352.48Transcription initiation factor IIA subunit 2 OS=D... [more]

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Properties
Property NameValue
Genbank descriptionC01003F12SK Veg1 Citrus clementina cDNA clone C01003F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287021 ID=CX287021; Name=CX287021; organism=Citrus clementina; type=EST; length=586bp
AAAATCTCTCCGCCCAAAAAAATTCATCTTCACAGCAAACGTTCAACAAG
TCTACCATTTAAATCAATCACCACCCCCCAATACGTAAGCTCCAATTTGT
AGCTTCAATTTCTCCATGCAATTTTGTGTTAACTTGATCAAAATTTTAGA
TACTGAATCATCATATTTTGTGTTGTTGTGTTTTTTTGCCTGCACAAATT
CAATCTTGACTCGATGCATTTGTTGAATACGTGGACTGAATCGACAGATC
ACGTGAGAAATGGCGACGTTTGAGCTGTATCGCAGGTCGACGATTGGGAT
GTGCTTAACCGAGACTTTAGACGAGATGGTCCAAAACGGTACGCTTACTC
CCGAGCTCGCTATCCAGGTTCTCGTCCAGTTCGATAAGTCTATGACAGAA
GCGCTAGAAACTCAGGTGAAGAGCAAGGTCTCCATTAAGGGGCATCTGCA
CACCTACAGGTTCTGTGACAATGTGTGGACATTCATCTTGCAAGATGCTT
TGTTCAAGAGTGAGGAATTACAAGAGACCGTCGGTAGGGTGAAAATAGTG
GCATGTGACTCAAAGCTGCTATCACAATAAGACAAT
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