CX287025

Overview
NameCX287025
Unique NameCX287025
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length595
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287025 vs. ExPASy Swiss-Prot
Match: SPOPL_MOUSE (Speckle-type POZ protein-like OS=Mus musculus GN=Spopl PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.585e-12
Identity = 40/107 (37.38%), Postives = 61/107 (57.01%), Query Frame = -2
Query:  265 MAQHLLAAADRYALERLKLLCEAKLCEDVAINTVATTLALAEQHHCSQLKAVCLKFIASPENLKA----------------VMQTDGFEYLKESCPSVLTELLQYVA 537
            MA +LLAAAD+YALERLK++CE  LC ++++  VA TL LA+ H   QLKA  + FI     L+                 +M+T G++ + +S P ++ E  + +A
Sbjct:  269 MADNLLAAADKYALERLKVMCEEALCSNLSVENVADTLVLADLHSAEQLKAQAIDFINRCSVLRQLGCKDGKNWNNNQATDIMETSGWKSMIQSHPHLVAEAFRALA 375          
BLAST of CX287025 vs. ExPASy Swiss-Prot
Match: SPOPL_HUMAN (Speckle-type POZ protein-like OS=Homo sapiens GN=SPOPL PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.585e-12
Identity = 40/107 (37.38%), Postives = 61/107 (57.01%), Query Frame = -2
Query:  265 MAQHLLAAADRYALERLKLLCEAKLCEDVAINTVATTLALAEQHHCSQLKAVCLKFIASPENLKA----------------VMQTDGFEYLKESCPSVLTELLQYVA 537
            MA +LLAAAD+YALERLK++CE  LC ++++  VA TL LA+ H   QLKA  + FI     L+                 +M+T G++ + +S P ++ E  + +A
Sbjct:  269 MADNLLAAADKYALERLKVMCEEALCSNLSVENVADTLVLADLHSAEQLKAQAIDFINRCSVLRQLGCKDGKNWNSNQATDIMETSGWKSMIQSHPHLVAEAFRALA 375          
BLAST of CX287025 vs. ExPASy Swiss-Prot
Match: BAT43_CAEEL (BTB and MATH domain-containing protein 43 OS=Caenorhabditis elegans GN=bath-43 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 9.527e-12
Identity = 38/91 (41.76%), Postives = 56/91 (61.54%), Query Frame = -2
Query:  265 MAQHLLAAADRYALERLKLLCEAKLCEDVAINTVATTLALAEQHHCSQLKAVCLKFIASPENLKAVMQTDGFEYLKESCPSVLTELLQYVA 537
            MAQ L+AAAD+Y L+RLK++CE  LC  +  +  + TL LA+ +  SQL+A  + FI    N   VM T+G+E L    P +L E+ + +A
Sbjct:  340 MAQSLIAAADKYQLDRLKVMCEQALCYQLTTDNASLTLMLADMYSASQLRAHSINFI--NVNANEVMDTEGWEDLVRDHPKLLEEVFRALA 428          
BLAST of CX287025 vs. ExPASy Swiss-Prot
Match: RDX_DROME (Protein roadkill OS=Drosophila melanogaster GN=rdx PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.122e-11
Identity = 37/91 (40.66%), Postives = 58/91 (63.74%), Query Frame = -2
Query:  265 MAQHLLAAADRYALERLKLLCEAKLCEDVAINTVATTLALAEQHHCSQLKAVCLKFIASPENLKAVMQTDGFEYLKESCPSVLTELLQYVA 537
            MA  LLAAAD+YALE+LK++CE  LC ++++ T A TL LA+ H   QLKA  + FI +  +   VM+T G++ +  +   ++ E  + +A
Sbjct:  724 MADDLLAAADKYALEKLKVMCEEALCVNLSVETAAETLILADLHSADQLKAQTIDFINT--HATDVMETSGWQNMITTHSHLIAEAFRALA 812          
BLAST of CX287025 vs. ExPASy Swiss-Prot
Match: SPOLA_DANRE (Speckle-type POZ protein-like A OS=Danio rerio GN=spopla PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.772e-11
Identity = 40/107 (37.38%), Postives = 59/107 (55.14%), Query Frame = -2
Query:  265 MAQHLLAAADRYALERLKLLCEAKLCEDVAINTVATTLALAEQHHCSQLKAVCLKFIASPENLKA----------------VMQTDGFEYLKESCPSVLTELLQYVA 537
            MA  LLAAAD+YALERLK++CE  LC  +++  VA TL LA+ H   QLKA  + FI     L+                 +M+T G++ + +S P ++ E  + +A
Sbjct:  269 MADSLLAAADKYALERLKVMCEEALCNSLSVENVADTLILADLHSAEQLKAQAIDFINRCSVLRQLGCKDGKNWNSNHATDIMETAGWKSMIQSHPHLVAEAFRALA 375          
BLAST of CX287025 vs. ExPASy Swiss-Prot
Match: SPOLB_DANRE (Speckle-type POZ protein-like B OS=Danio rerio GN=spoplb PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.620e-11
Identity = 40/107 (37.38%), Postives = 59/107 (55.14%), Query Frame = -2
Query:  265 MAQHLLAAADRYALERLKLLCEAKLCEDVAINTVATTLALAEQHHCSQLKAVCLKFIASPENLKA----------------VMQTDGFEYLKESCPSVLTELLQYVA 537
            MA +LLAAAD+YALERLK+LCE  LC  +++  VA  L LA+ H   QLKA  + FI     L+                 +M+T G++ + +S P ++ E  + +A
Sbjct:  269 MADNLLAAADKYALERLKVLCEEALCNSLSVENVADVLILADLHSAEQLKAQAIDFINRCSVLRQLGCKDGKNWNSNHAADIMETAGWKAMIQSHPHLVAEAFRALA 375          
BLAST of CX287025 vs. ExPASy Swiss-Prot
Match: SPOP_XENTR (Speckle-type POZ protein OS=Xenopus tropicalis GN=spop PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.175e-11
Identity = 37/91 (40.66%), Postives = 55/91 (60.44%), Query Frame = -2
Query:  265 MAQHLLAAADRYALERLKLLCEAKLCEDVAINTVATTLALAEQHHCSQLKAVCLKFIASPENLKAVMQTDGFEYLKESCPSVLTELLQYVA 537
            MA  LLAAAD+YALERLK++CE  LC ++++   A  L LA+ H   QLK   + FI    +   VM+T G++ +  S P ++ E  + +A
Sbjct:  269 MADDLLAAADKYALERLKVMCEEALCSNLSVENAAEILILADLHSADQLKTQAVDFI--NYHASDVMETSGWKSMVVSHPHLVAEAYRSLA 357          
BLAST of CX287025 vs. ExPASy Swiss-Prot
Match: SPOPB_XENLA (Speckle-type POZ protein B OS=Xenopus laevis GN=spop-B PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.175e-11
Identity = 37/91 (40.66%), Postives = 55/91 (60.44%), Query Frame = -2
Query:  265 MAQHLLAAADRYALERLKLLCEAKLCEDVAINTVATTLALAEQHHCSQLKAVCLKFIASPENLKAVMQTDGFEYLKESCPSVLTELLQYVA 537
            MA  LLAAAD+YALERLK++CE  LC ++++   A  L LA+ H   QLK   + FI    +   VM+T G++ +  S P ++ E  + +A
Sbjct:  269 MADDLLAAADKYALERLKVMCEEALCSNLSVENAAEILILADLHSADQLKTQAVDFI--NYHASDVMETSGWKSMVVSHPHLVAEAYRSLA 357          
BLAST of CX287025 vs. ExPASy Swiss-Prot
Match: SPOPA_XENLA (Speckle-type POZ protein A OS=Xenopus laevis GN=spop-A PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.175e-11
Identity = 37/91 (40.66%), Postives = 55/91 (60.44%), Query Frame = -2
Query:  265 MAQHLLAAADRYALERLKLLCEAKLCEDVAINTVATTLALAEQHHCSQLKAVCLKFIASPENLKAVMQTDGFEYLKESCPSVLTELLQYVA 537
            MA  LLAAAD+YALERLK++CE  LC ++++   A  L LA+ H   QLK   + FI    +   VM+T G++ +  S P ++ E  + +A
Sbjct:  269 MADDLLAAADKYALERLKVMCEEALCSNLSVENAAEILILADLHSADQLKTQAVDFI--NYHASDVMETSGWKSMVVSHPHLVAEAYRSLA 357          
The following BLAST results are available for this feature:
BLAST of CX287025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
SPOPL_MOUSE5.585e-1237.38Speckle-type POZ protein-like OS=Mus musculus GN=S... [more]
SPOPL_HUMAN5.585e-1237.38Speckle-type POZ protein-like OS=Homo sapiens GN=S... [more]
BAT43_CAEEL9.527e-1241.76BTB and MATH domain-containing protein 43 OS=Caeno... [more]
RDX_DROME2.122e-1140.66Protein roadkill OS=Drosophila melanogaster GN=rdx... [more]
SPOLA_DANRE2.772e-1137.38Speckle-type POZ protein-like A OS=Danio rerio GN=... [more]
SPOLB_DANRE3.620e-1137.38Speckle-type POZ protein-like B OS=Danio rerio GN=... [more]
SPOP_XENTR6.175e-1140.66Speckle-type POZ protein OS=Xenopus tropicalis GN=... [more]
SPOPB_XENLA6.175e-1140.66Speckle-type POZ protein B OS=Xenopus laevis GN=sp... [more]
SPOPA_XENLA6.175e-1140.66Speckle-type POZ protein A OS=Xenopus laevis GN=sp... [more]
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Properties
Property NameValue
Genbank descriptionC01003G04SK Veg1 Citrus clementina cDNA clone C01003G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287025 ID=CX287025; Name=CX287025; organism=Citrus clementina; type=EST; length=595bp
TTTTTTTTTTTTTTTTTTCAAAAATTGTAGAAAATATTAATGAACCACTA
ATATTATATTTAACAAATAATTTATCAACTGTTAGTATAATCCAAAAATG
TTTGGACCTAACATTTTTTTTTCCGGGGTGGTAAAGATAATGGAAGACCA
GTCATTCCTTTATCAATGTACCCTCTGCTTCACCCGCCTCCCATTGACAT
CACAGCCATCTGGTAATGTCTCGTTCCCATGCCCTGAAGCAATGACAGAA
TGCTCGCCTATTTTGGCCACATATTGTAGCAGTTCGGTGAGGACAGAAGG
GCAACTTTCTTTCAAGTATTCAAACCCATCTGTTTGCATCACAGCTTTTA
AATTTTCAGGTGATGCAATGAATTTGAGACAAACAGCTTTCAGTTGGGAA
CAGTGATGCTGCTCTGCCAAGGCCAACGTGGTGGCAACAGTGTTTATAGC
AACATCTTCACAGAGCTTAGCCTCACAGAGTAATTTGAGCCTCTCAAGCG
CATACCGGTCTGCTGCAGCAAGAAGATGCTGAGCCATCAGTGTAGAAGCC
CATTTTGGTTTTAATCATCAAACAGGAAAAGAATTGTATTAATGA
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