CX287026

Overview
NameCX287026
Unique NameCX287026
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287026 vs. ExPASy Swiss-Prot
Match: TIM8_ARATH (Mitochondrial import inner membrane translocase subunit Tim8 OS=Arabidopsis thaliana GN=TIM8 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.005e-27
Identity = 55/76 (72.37%), Postives = 67/76 (88.16%), Query Frame = -3
Query:  258 MDNSALNSAQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQRYLDMSVIIMKRFQS 485
            MD S  N+ ++ QFL QEKE+AM+NEMV+K+T+VCWDKCITS PGSKFSSSES+CL +CAQRY+DMS+IIMKRF S
Sbjct:    1 MDPSMANNPELLQFLAQEKERAMVNEMVSKMTSVCWDKCITSAPGSKFSSSESSCLTHCAQRYMDMSMIIMKRFNS 76          
BLAST of CX287026 vs. ExPASy Swiss-Prot
Match: TIM8_CRYNE (Mitochondrial import inner membrane translocase subunit TIM8 OS=Cryptococcus neoformans GN=TIM8 PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.812e-12
Identity = 34/82 (41.46%), Postives = 51/82 (62.20%), Query Frame = -3
Query:  252 PMDNSALNSA---QMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQRYLDMSVIIMKRFQSMQ 488
            P    AL+ A   +++ FL QE+ KA L   + +LTN CW+ CIT    SKFS SE+ CL NC  R+LD S+ I+++ ++ +
Sbjct:    4 PTSIPALDEASKKELESFLEQEQAKAKLQASIHELTNTCWNTCITGGISSKFSKSEAQCLENCVDRFLDSSLYIVRQIEAQK 85          
BLAST of CX287026 vs. ExPASy Swiss-Prot
Match: TIM8_DROME (Mitochondrial import inner membrane translocase subunit Tim8 OS=Drosophila melanogaster GN=Tim8 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.061e-11
Identity = 28/80 (35.00%), Postives = 48/80 (60.00%), Query Frame = -3
Query:  255 LKPMDNSALNSAQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQRYLDMSVIIMKRFQSM 494
            +   +N + N  ++Q+FL  EK+KA +N  + +   +CW+KCI   P +K   +   CL+NC  R++D S++I +RF  M
Sbjct:    1 MSDFENLSGNDKELQEFLLIEKQKAQVNAQIHEFNEICWEKCI-GKPSTKLDHATETCLSNCVDRFIDTSLLITQRFAQM 79          
The following BLAST results are available for this feature:
BLAST of CX287026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TIM8_ARATH9.005e-2772.37Mitochondrial import inner membrane translocase su... [more]
TIM8_CRYNE2.812e-1241.46Mitochondrial import inner membrane translocase su... [more]
TIM8_DROME4.061e-1135.00Mitochondrial import inner membrane translocase su... [more]
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Properties
Property NameValue
Genbank descriptionC01003G05SK Veg1 Citrus clementina cDNA clone C01003G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287026 ID=CX287026; Name=CX287026; organism=Citrus clementina; type=EST; length=634bp
TTTTTTTTTTTTTTTTTGCATATACAAGCAAAAAGTATAACTCATAACAA
TTAAAAGTACCATAAAAAAAAAAGTATCCAGAAAAATGATTATAAGTAGC
GAAAGTACAAAAACCATATTAATTTAAAAGTTTACAGGGATGCAATATGA
ATCAGTTCAACAATACTAAGTTTCTTTCTCTTTTAGATACTGATGTCGGA
GAAATAAAATCTTGTAAGCAGGATCGAAGGTCAATGCTTCCATGAACTTC
ACTGCATAGACTGAAATCGTTTCATGATGATAACGCTCATATCTAAGTAA
CGCTGAGCACAGTTGGCGAGGCAAGCTGATTCACTTGAGCTGAATTTACT
CCCAGGCGTACTCGTGATGCATTTGTCCCAGCAGACATTTGTTAGCTTTG
CCACCATCTCATTAAGCATGGCCTTTTCCTTTTCTTGATTAAGAAATTGC
TGCATTTGAGCTGAATTTAGAGCGGAATTATCCATTGGCTTCAGTCACGA
CTGGATTATTTGACACCGCTTGCTCCTGGTGCCGAATTCGGCACGAGGCC
AGATCAAATTTGGGTCAATACATAGGCAACTAATAATATGAATCTGCAGA
ACAAATGTACATAATTTTGTTAATAATATTCATG
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