CX287037

Overview
NameCX287037
Unique NameCX287037
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length643
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig23 contig Ccv1_Contig23:1..643. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX287037 vs. ExPASy Swiss-Prot
Match: CAPTC_DICDI (Uncharacterized CDP-alcohol phosphatidyltransferase class-I family protein 3 OS=Dictyostelium discoideum GN=captC PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.416e-11
Identity = 48/160 (30.00%), Postives = 76/160 (47.50%), Query Frame = 1 
Query:   34 TVYFNVSNVYKVVQSRNGSILRALAMLYPFVVLLVGVLAWDYLSP-----AEIIRKYPHFVVLGTGLAFGFLVGRMILAHLCDEPKGLKTNMCMSLLYLPFAVANALTAKLNDGDPLVDEFWVLLGYCIFTAGLYLHFATSVIHEITTALGIYCFRITRK 498
            T +FN+ NV + +Q++   IL AL  +  +V++ V    W Y S      + I       V    G+ FG LV R+ILAH+C E    K N+  + LY         T    +G  ++ E  +L+ + + +   Y  F  S I ++ + L I CF IT+K
Sbjct:  243 TCFFNIKNVVQHLQAKQKPILPALKHILVWVIITVSSFIWYYTSTNLLPLSSIWFNNIRTVQFSIGIIFGELVSRLILAHMCHE----KYNIIQAPLYPLILSTFCSTINYFNGTIIIPENLLLILFTVTSFVHYSLFVKSTISQLCSYLNIKCFTITKK 398
The following BLAST results are available for this feature:
BLAST of CX287037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CAPTC_DICDI9.416e-1130.00Uncharacterized CDP-alcohol phosphatidyltransferas... [more]
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Properties
Property NameValue
Genbank descriptionC01003H05SK Veg1 Citrus clementina cDNA clone C01003H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287037 ID=CX287037; Name=CX287037; organism=Citrus clementina; type=EST; length=643bp
TTATATTTAATGATCGCCTTTGGTGTTATCCCTACAGTATACTTCAATGT
GTCCAATGTTTATAAGGTTGTTCAGTCAAGAAACGGAAGCATTTTACGGG
CATTAGCAATGCTTTACCCCTTTGTGGTACTCTTGGTAGGAGTGCTTGCT
TGGGATTATCTTTCTCCGGCTGAAATTATTCGGAAATATCCACATTTCGT
TGTTTTGGGAACTGGACTTGCATTTGGGTTCCTCGTGGGAAGAATGATTC
TGGCTCACTTGTGTGATGAGCCCAAGGGACTGAAAACTAACATGTGCATG
TCACTGTTGTATCTTCCATTTGCCGTAGCTAATGCACTTACTGCTAAACT
AAATGACGGAGATCCTTTAGTTGATGAATTCTGGGTTCTGCTCGGTTACT
GTATATTTACAGCTGGCCTCTATCTACACTTTGCGACATCAGTTATTCAT
GAAATTACGACGGCCTTGGGTATTTATTGCTTCAGGATTACCAGGAAAGA
AGCTTGAAAGCTTCTTGATGCTTACATTTGGATGGCAAGTTGGAAGCAAT
GCAGCCAAGCCAGGGACTTGGCATGTCAATTTTGGTTTAGTATCAGTAAC
AGATTTGTATCTGGACACAGTTTCTGGTCCATCCCTCATTGTT
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