CX287038

Overview
NameCX287038
Unique NameCX287038
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length356
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11964 contig Ccv1_Contig11964:419..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287038 vs. ExPASy Swiss-Prot
Match: PSAG_SPIOL (Photosystem I reaction center subunit V, chloroplastic OS=Spinacia oleracea GN=PSAG PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.730e-26
Identity = 54/58 (93.10%), Postives = 57/58 (98.28%), Query Frame = -1
Query:  156 QNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDP 329
            QNG++HFEAGD RAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILAT+SNGYDP
Sbjct:  107 QNGMSHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDP 164          
BLAST of CX287038 vs. ExPASy Swiss-Prot
Match: PSAG_ARATH (Photosystem I reaction center subunit V, chloroplastic OS=Arabidopsis thaliana GN=PSAG PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.730e-26
Identity = 55/58 (94.83%), Postives = 56/58 (96.55%), Query Frame = -1
Query:  156 QNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDP 329
            QNG THFEAGD RAKEYVSLLKSNDP+GFNIVDVLAWGSIGHIVAYYILATSSNGYDP
Sbjct:   99 QNGKTHFEAGDDRAKEYVSLLKSNDPIGFNIVDVLAWGSIGHIVAYYILATSSNGYDP 156          
BLAST of CX287038 vs. ExPASy Swiss-Prot
Match: PSAG_HORVU (Photosystem I reaction center subunit V, chloroplastic OS=Hordeum vulgare GN=PSAG PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.491e-24
Identity = 50/58 (86.21%), Postives = 54/58 (93.10%), Query Frame = -1
Query:  156 QNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDP 329
            QNG THFEAGD RAKE+  +LKSNDPVGFN+VDVLAWGSIGHIVAYYILAT+SNGYDP
Sbjct:   82 QNGKTHFEAGDERAKEFAGILKSNDPVGFNLVDVLAWGSIGHIVAYYILATTSNGYDP 139          
BLAST of CX287038 vs. ExPASy Swiss-Prot
Match: PSAG_TORRU (Photosystem I reaction center subunit V, chloroplastic OS=Tortula ruralis GN=PSAG PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.426e-11
Identity = 29/57 (50.88%), Postives = 41/57 (71.93%), Query Frame = -1
Query:  159 QNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYD 329
            QNGV          + + S+LK+NDP GF +VDVLAWG++GH V ++ILAT++NGY+
Sbjct:   53 QNGVPTTRRVTAVRRRWWSMLKTNDPAGFTLVDVLAWGALGHAVGFFILATATNGYN 109          
The following BLAST results are available for this feature:
BLAST of CX287038 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PSAG_SPIOL3.730e-2693.10Photosystem I reaction center subunit V, chloropla... [more]
PSAG_ARATH3.730e-2694.83Photosystem I reaction center subunit V, chloropla... [more]
PSAG_HORVU3.491e-2486.21Photosystem I reaction center subunit V, chloropla... [more]
PSAG_TORRU4.426e-1150.88Photosystem I reaction center subunit V, chloropla... [more]
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Properties
Property NameValue
Genbank descriptionC01003H06SK Veg1 Citrus clementina cDNA clone C01003H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287038 ID=CX287038; Name=CX287038; organism=Citrus clementina; type=EST; length=356bp
TCGGCACGAGGTTTTTTTTTTTGATTACATCATCGGTCTCATCCATTAAA
TGCTAGGAAATTTATTTAACTATACAAAGCGCAACACTTGAGAAATTAAG
AAACTAAAAGAGACAAAGAGAGACAGTACAAATAACAAAATCAACCAAAG
AACTTGGGATCATAGCCGTTGCTGGAGGTGGCCAAGATGTAGTAAGCGAC
AATATGGCCAATGGAACCCCAAGCAAGAACATCAACAATGTTAAAGCCAA
CTGGGTCGTTGGATTTGAGGAGGCTAACATATTCCTTGGCACGAACATCA
CCGGCTTCAAAGTGGGTGACTCCATTCTGCCTCGTGCCGAATTGGGGGGG
CCCGGT
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