CX287040
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX287040 vs. ExPASy Swiss-Prot
Match: PP207_ARATH (Pentatricopeptide repeat-containing protein At3g02330 OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2) HSP 1 Score: 138.658 bits (348), Expect = 1.938e-32 Identity = 68/123 (55.28%), Postives = 86/123 (69.92%), Query Frame = 1 Query: 172 FSRIFQELTHHRAQNPGKQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVFVEMGR 540 FS +F+E A GKQAHA +I+SGF+PT FV NCL+Q+Y + SA VFDKMP RDVVSWN +I GY+ +M A + F MP RDV+SWNS+LSGYL G+ K+I+VFV+MGR Sbjct: 51 FSFVFKECAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGR 173
BLAST of CX287040 vs. ExPASy Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.702e-20 Identity = 47/121 (38.84%), Postives = 76/121 (62.81%), Query Frame = 1 Query: 172 FSRIFQELTHHRAQNPGKQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVFVEM 534 F + + +A G+Q H ++ G ++V LI +Y++ L+ A KVFDK P RDVVS+ ALI GYA RG + A+ LF+ +P +DV+SWN+++SGY G++ +A+++F +M Sbjct: 137 FPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDM 257
BLAST of CX287040 vs. ExPASy Swiss-Prot
Match: PP353_ARATH (Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana GN=PCMP-H5 PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.103e-19 Identity = 47/124 (37.90%), Postives = 74/124 (59.68%), Query Frame = 1 Query: 172 FSRIFQELTHHRAQNPGKQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVFVEMGRL 543 + + Q + RA GK+ H + SGF P I + N L+++Y KC +L A KVFD+MP RD+ SWN ++ GYA G + AR LF+ M E+D SW ++++GY+ +A+ ++ M R+ Sbjct: 88 YCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRV 211
BLAST of CX287040 vs. ExPASy Swiss-Prot
Match: PP295_ARATH (Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.103e-19 Identity = 42/105 (40.00%), Postives = 71/105 (67.62%), Query Frame = 1 Query: 220 GKQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVFVEM 534 G++ HA++++ G FV L+ +Y C +L+SA +VFD +D+ +WN+++ YA G + AR LF+ MPER+VISW+ L++GY++ G + +A+D+F EM Sbjct: 81 GQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREM 185
BLAST of CX287040 vs. ExPASy Swiss-Prot
Match: PP369_ARATH (Pentatricopeptide repeat-containing protein At5g08305 OS=Arabidopsis thaliana GN=PCMP-E105 PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 3.210e-19 Identity = 41/114 (35.96%), Postives = 75/114 (65.79%), Query Frame = 1 Query: 220 GKQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVFVEMGRLSGMVDN 561 G H ++ SG + +F+ N LI +Y + SA K+FD+MP +++V+WN+++ YA G++ AR +F+ M ERDV++W+S++ GY+ G+++KA+++F +M R+ N Sbjct: 127 GGSLHCSVVKSGLEWDLFICNTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKAN 240
BLAST of CX287040 vs. ExPASy Swiss-Prot
Match: PP249_ARATH (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 3.210e-19 Identity = 41/111 (36.94%), Postives = 69/111 (62.16%), Query Frame = 1 Query: 220 GKQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVFVEMGRLSGM 552 GK H ++ +GF+ + N LI +Y+KC +A ++FD+M + VV+WN+++ GY GE+ A FE MPE++++SWN+++SG + F +AI+VF M G+ Sbjct: 356 GKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGV 466 HSP 2 Score: 68.9366 bits (167), Expect = 1.886e-11 Identity = 36/90 (40.00%), Postives = 52/90 (57.78%), Query Frame = 1 Query: 205 RAQNPGKQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSL 474 RA+ G Q H ++ G+ +FV N L+ Y +C L SA KVFD+M +R+VVSW ++I GYA R A LF M + ++ NS+ Sbjct: 148 RAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSV 237
BLAST of CX287040 vs. ExPASy Swiss-Prot
Match: PP261_ARATH (Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 5.475e-19 Identity = 45/106 (42.45%), Postives = 66/106 (62.26%), Query Frame = 1 Query: 223 KQAHARLIVSGFKPTIFVSNCLIQLYIKCSNL--KSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVFVEM 534 K H + G I+V N LI Y +C L + A+K+F+KM +RD VSWN+++ G GE+ AR LF+ MP+RD+ISWN++L GY + SKA ++F +M Sbjct: 137 KMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKM 242 HSP 2 Score: 78.1814 bits (191), Expect = 3.109e-14 Identity = 36/85 (42.35%), Postives = 55/85 (64.71%), Query Frame = 1 Query: 280 NCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVFVEM 534 N ++ +K L+ A ++FD+MPQRD++SWN ++ GYA EM A LFE MPER+ +SW++++ GY GD A +F +M Sbjct: 189 NSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKM 273 HSP 3 Score: 69.3218 bits (168), Expect = 1.444e-11 Identity = 29/91 (31.87%), Postives = 57/91 (62.64%), Query Frame = 1 Query: 280 NCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAM--PERDVISWNSLLSGYL---LVGDFSKAIDVFVEMG 537 N ++ Y +C + A ++F+KMP+R+ VSW+ ++ GY+ G+M +AR +F+ M P ++V++W +++GY L+ + + +D V G Sbjct: 220 NTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASG 310
BLAST of CX287040 vs. ExPASy Swiss-Prot
Match: PP165_ARATH (Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 5.475e-19 Identity = 47/111 (42.34%), Postives = 73/111 (65.77%), Query Frame = 1 Query: 220 GKQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVFVEMGRLSGM 552 GKQ H L G + + N LI +Y+K +L A KVFD+M +RDV+SWN+L+ GYA G+M A+ LF M ++ ++SW +++SGY +G + +A+D F EM +L+G+ Sbjct: 128 GKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREM-QLAGI 237
BLAST of CX287040 vs. ExPASy Swiss-Prot
Match: PP167_ARATH (Pentatricopeptide repeat-containing protein At2g21090 OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 7.151e-19 Identity = 47/121 (38.84%), Postives = 73/121 (60.33%), Query Frame = 1 Query: 181 IFQELTHHRAQNPGKQAHARLIVSGFK-PTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVFVEMGR 540 + Q+ ++ GK H L ++GFK P +SN LI +Y+KC A KVFD+M R++ SWN ++ GY G + AR +F++MPERDV+SWN+++ GY G+ +A+ + E R Sbjct: 52 LLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRR 172 HSP 2 Score: 92.0485 bits (227), Expect = 2.081e-18 Identity = 43/121 (35.54%), Postives = 72/121 (59.50%), Query Frame = 1 Query: 172 FSRIFQELTHHRAQNPGKQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVFVEM 534 F+ + R +QAH +++V+GF + +S +I Y KC ++SA + FD+M +D+ W LI GYA G+M A LF MPE++ +SW +L++GY+ G ++A+D+F +M Sbjct: 182 FAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKM 302
BLAST of CX287040 vs. ExPASy Swiss-Prot
Match: PP433_ARATH (Pentatricopeptide repeat-containing protein At5g56310 OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 2.717e-18 Identity = 48/107 (44.86%), Postives = 66/107 (61.68%), Query Frame = 1 Query: 220 GKQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMP--ERDVISWNSLLSGYLLVGDFSKAIDVFVEM 534 G+Q H +++V GF ++ V LIQ+Y C L A K+FD+M +DV WNAL+ GY GEM AR+L E MP R+ +SW ++SGY G S+AI+VF M Sbjct: 135 GRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRM 241 The following BLAST results are available for this feature:
BLAST of CX287040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 88
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287040 ID=CX287040; Name=CX287040; organism=Citrus clementina; type=EST; length=563bpback to top |