CX287040

Overview
NameCX287040
Unique NameCX287040
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length563
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287040 vs. ExPASy Swiss-Prot
Match: PP207_ARATH (Pentatricopeptide repeat-containing protein At3g02330 OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 1.938e-32
Identity = 68/123 (55.28%), Postives = 86/123 (69.92%), Query Frame = 1
Query:  172 FSRIFQELTHHRAQNPGKQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVFVEMGR 540
            FS +F+E     A   GKQAHA +I+SGF+PT FV NCL+Q+Y    +  SA  VFDKMP RDVVSWN +I GY+   +M  A + F  MP RDV+SWNS+LSGYL  G+  K+I+VFV+MGR
Sbjct:   51 FSFVFKECAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGR 173          
BLAST of CX287040 vs. ExPASy Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.702e-20
Identity = 47/121 (38.84%), Postives = 76/121 (62.81%), Query Frame = 1
Query:  172 FSRIFQELTHHRAQNPGKQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVFVEM 534
            F  + +     +A   G+Q H  ++  G    ++V   LI +Y++   L+ A KVFDK P RDVVS+ ALI GYA RG +  A+ LF+ +P +DV+SWN+++SGY   G++ +A+++F +M
Sbjct:  137 FPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDM 257          
BLAST of CX287040 vs. ExPASy Swiss-Prot
Match: PP353_ARATH (Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana GN=PCMP-H5 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.103e-19
Identity = 47/124 (37.90%), Postives = 74/124 (59.68%), Query Frame = 1
Query:  172 FSRIFQELTHHRAQNPGKQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVFVEMGRL 543
            +  + Q  +  RA   GK+ H  +  SGF P I + N L+++Y KC +L  A KVFD+MP RD+ SWN ++ GYA  G +  AR LF+ M E+D  SW ++++GY+      +A+ ++  M R+
Sbjct:   88 YCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRV 211          
BLAST of CX287040 vs. ExPASy Swiss-Prot
Match: PP295_ARATH (Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.103e-19
Identity = 42/105 (40.00%), Postives = 71/105 (67.62%), Query Frame = 1
Query:  220 GKQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVFVEM 534
            G++ HA++++ G     FV   L+ +Y  C +L+SA +VFD    +D+ +WN+++  YA  G +  AR LF+ MPER+VISW+ L++GY++ G + +A+D+F EM
Sbjct:   81 GQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREM 185          
BLAST of CX287040 vs. ExPASy Swiss-Prot
Match: PP369_ARATH (Pentatricopeptide repeat-containing protein At5g08305 OS=Arabidopsis thaliana GN=PCMP-E105 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.210e-19
Identity = 41/114 (35.96%), Postives = 75/114 (65.79%), Query Frame = 1
Query:  220 GKQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVFVEMGRLSGMVDN 561
            G   H  ++ SG +  +F+ N LI +Y    +  SA K+FD+MP +++V+WN+++  YA  G++  AR +F+ M ERDV++W+S++ GY+  G+++KA+++F +M R+     N
Sbjct:  127 GGSLHCSVVKSGLEWDLFICNTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKAN 240          
BLAST of CX287040 vs. ExPASy Swiss-Prot
Match: PP249_ARATH (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.210e-19
Identity = 41/111 (36.94%), Postives = 69/111 (62.16%), Query Frame = 1
Query:  220 GKQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVFVEMGRLSGM 552
            GK  H  ++ +GF+    + N LI +Y+KC    +A ++FD+M  + VV+WN+++ GY   GE+  A   FE MPE++++SWN+++SG +    F +AI+VF  M    G+
Sbjct:  356 GKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGV 466          

HSP 2 Score: 68.9366 bits (167), Expect = 1.886e-11
Identity = 36/90 (40.00%), Postives = 52/90 (57.78%), Query Frame = 1
Query:  205 RAQNPGKQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSL 474
            RA+  G Q H  ++  G+   +FV N L+  Y +C  L SA KVFD+M +R+VVSW ++I GYA R     A  LF  M   + ++ NS+
Sbjct:  148 RAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSV 237          
BLAST of CX287040 vs. ExPASy Swiss-Prot
Match: PP261_ARATH (Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.475e-19
Identity = 45/106 (42.45%), Postives = 66/106 (62.26%), Query Frame = 1
Query:  223 KQAHARLIVSGFKPTIFVSNCLIQLYIKCSNL--KSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVFVEM 534
            K  H  +   G    I+V N LI  Y +C  L  + A+K+F+KM +RD VSWN+++ G    GE+  AR LF+ MP+RD+ISWN++L GY    + SKA ++F +M
Sbjct:  137 KMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKM 242          

HSP 2 Score: 78.1814 bits (191), Expect = 3.109e-14
Identity = 36/85 (42.35%), Postives = 55/85 (64.71%), Query Frame = 1
Query:  280 NCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVFVEM 534
            N ++   +K   L+ A ++FD+MPQRD++SWN ++ GYA   EM  A  LFE MPER+ +SW++++ GY   GD   A  +F +M
Sbjct:  189 NSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKM 273          

HSP 3 Score: 69.3218 bits (168), Expect = 1.444e-11
Identity = 29/91 (31.87%), Postives = 57/91 (62.64%), Query Frame = 1
Query:  280 NCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAM--PERDVISWNSLLSGYL---LVGDFSKAIDVFVEMG 537
            N ++  Y +C  +  A ++F+KMP+R+ VSW+ ++ GY+  G+M +AR +F+ M  P ++V++W  +++GY    L+ +  + +D  V  G
Sbjct:  220 NTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASG 310          
BLAST of CX287040 vs. ExPASy Swiss-Prot
Match: PP165_ARATH (Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.475e-19
Identity = 47/111 (42.34%), Postives = 73/111 (65.77%), Query Frame = 1
Query:  220 GKQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVFVEMGRLSGM 552
            GKQ H  L   G +  +   N LI +Y+K  +L  A KVFD+M +RDV+SWN+L+ GYA  G+M  A+ LF  M ++ ++SW +++SGY  +G + +A+D F EM +L+G+
Sbjct:  128 GKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREM-QLAGI 237          
BLAST of CX287040 vs. ExPASy Swiss-Prot
Match: PP167_ARATH (Pentatricopeptide repeat-containing protein At2g21090 OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.151e-19
Identity = 47/121 (38.84%), Postives = 73/121 (60.33%), Query Frame = 1
Query:  181 IFQELTHHRAQNPGKQAHARLIVSGFK-PTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVFVEMGR 540
            + Q+    ++   GK  H  L ++GFK P   +SN LI +Y+KC     A KVFD+M  R++ SWN ++ GY   G +  AR +F++MPERDV+SWN+++ GY   G+  +A+  + E  R
Sbjct:   52 LLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRR 172          

HSP 2 Score: 92.0485 bits (227), Expect = 2.081e-18
Identity = 43/121 (35.54%), Postives = 72/121 (59.50%), Query Frame = 1
Query:  172 FSRIFQELTHHRAQNPGKQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVFVEM 534
            F+ +       R     +QAH +++V+GF   + +S  +I  Y KC  ++SA + FD+M  +D+  W  LI GYA  G+M  A  LF  MPE++ +SW +L++GY+  G  ++A+D+F +M
Sbjct:  182 FAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKM 302          
BLAST of CX287040 vs. ExPASy Swiss-Prot
Match: PP433_ARATH (Pentatricopeptide repeat-containing protein At5g56310 OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.717e-18
Identity = 48/107 (44.86%), Postives = 66/107 (61.68%), Query Frame = 1
Query:  220 GKQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMP--ERDVISWNSLLSGYLLVGDFSKAIDVFVEM 534
            G+Q H +++V GF  ++ V   LIQ+Y  C  L  A K+FD+M  +DV  WNAL+ GY   GEM  AR+L E MP   R+ +SW  ++SGY   G  S+AI+VF  M
Sbjct:  135 GRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRM 241          
The following BLAST results are available for this feature:
BLAST of CX287040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
PP207_ARATH1.938e-3255.28Pentatricopeptide repeat-containing protein At3g02... [more]
PPR21_ARATH1.702e-2038.84Pentatricopeptide repeat-containing protein At1g08... [more]
PP353_ARATH1.103e-1937.90Pentatricopeptide repeat-containing protein At4g37... [more]
PP295_ARATH1.103e-1940.00Pentatricopeptide repeat-containing protein At3g62... [more]
PP369_ARATH3.210e-1935.96Pentatricopeptide repeat-containing protein At5g08... [more]
PP249_ARATH3.210e-1936.94Pentatricopeptide repeat-containing protein At3g22... [more]
PP261_ARATH5.475e-1942.45Pentatricopeptide repeat-containing protein At3g29... [more]
PP165_ARATH5.475e-1942.34Pentatricopeptide repeat-containing protein At2g20... [more]
PP167_ARATH7.151e-1938.84Pentatricopeptide repeat-containing protein At2g21... [more]
PP433_ARATH2.717e-1844.86Pentatricopeptide repeat-containing protein At5g56... [more]

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Properties
Property NameValue
Genbank descriptionC01003H08SK Veg1 Citrus clementina cDNA clone C01003H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287040 ID=CX287040; Name=CX287040; organism=Citrus clementina; type=EST; length=563bp
CGGCACGAGGCATGAGTCTGAAATTTGATGGCCTATTACCTATGGCTGAT
CAGATTCCTATCGAAGCCTCAATGCAAAACATTTCTCATTGCTTCATTCT
CTACATTCACTACGCTAAAAGAAGGAAAAACAACAGCACCAGCAATCACA
ACGAAGCCAAAAACTATTACTTTCTCTCGCATTTTCCAAGAATTGACGCA
TCACCGGGCGCAAAACCCGGGGAAACAAGCCCATGCTCGCTTGATAGTAT
CTGGGTTCAAGCCAACAATTTTTGTCTCCAATTGCTTGATCCAATTGTAC
ATTAAATGCTCCAATTTGAAGTCAGCGCTTAAGGTGTTTGACAAAATGCC
TCAAAGGGATGTTGTTTCTTGGAATGCTTTGATTTTCGGGTACGCAGTTC
GTGGAGAGATGGGTATTGCGAGGACTTTGTTTGAGGCTATGCCTGAAAGA
GATGTGATCTCGTGGAATTCATTGCTATCAGGGTATCTGCTCGTAGGGGA
TTTTTCAAAGGCAATTGATGTTTTTGTGGAGATGGGGAGATTGAGTGGGA
TGGTTGATAATAG
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