CX287047

Overview
NameCX287047
Unique NameCX287047
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length582
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9857 contig Ccv1_Contig9857:71..652. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX287047 vs. ExPASy Swiss-Prot
Match: RR20_ARATH (30S ribosomal protein S20, chloroplastic OS=Arabidopsis thaliana GN=RPS20 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.843e-28
Identity = 71/143 (49.65%), Postives = 85/143 (59.44%), Query Frame = 3 
Query:  123 FSNKLSHNV-FSTGSLTMSPIQRPMRHSVVCXXXXXXXXXXXXXXXXXXXXXX-IYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYSVIDKAVKVGTLHRNTGXXXXXXXXXXXXXVEIHHGWYTPTPA 545
            FS  +S  V FSTG+L    +Q+PMR  +VC                       +YNKS+KSE +TRMKKVLEAL+GL+KK DAQ +E++ VEKLI EAYS IDKAVKV  LH+NTG             VEIHHGWY P  A
Sbjct:   51 FSQSVSQCVAFSTGNLW---VQKPMRQLIVCEAAAPTKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEALEGLKKKTDAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEIHHGWYVPDAA 190
The following BLAST results are available for this feature:
BLAST of CX287047 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RR20_ARATH6.843e-2849.6530S ribosomal protein S20, chloroplastic OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionC01004A05SK Veg1 Citrus clementina cDNA clone C01004A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287047 ID=CX287047; Name=CX287047; organism=Citrus clementina; type=EST; length=582bp
AGATGGCACTTCACTGCTTATCATCATCGTCTTGTTTAACGATTCAATCA
AAATTCAAGACCCTCTCACTAAACAACAACTCTTCTTCTCACTCCAGCTT
CGCCACTTTCAAATCTCTCTGTTTCTCCAATAAGCTCTCCCACAATGTCT
TCTCCACAGGCTCCCTCACAATGAGCCCAATCCAGAGGCCAATGCGTCAT
TCAGTTGTTTGCAAGGCAGCTACTAAGAAGAAAGCTGATTCAGCTGCAAA
GAGGGCTCGTCAAGCTGAGAAAAGGCGCATCTATAACAAATCTAGGAAAT
CTGAAGTCAAAACCCGCATGAAGAAGGTTTTGGAAGCACTGGATGGGCTC
AGGAAGAAACCTGATGCACAACCTGAGGAAGTTCTTCCAGTTGAGAAGCT
GATTGCAGAGGCGTATTCAGTTATCGACAAAGCAGTGAAAGTGGGAACGT
TGCACAGGAACACTGGTGCTCGCAGAAAGTCCCGGCTTGCTAGGAGAAAG
AAGGCTGTGGAGATTCACCATGGCTGGTATACCCCTACTCCTGCAGAAAC
GGTCCAATGAAAAGGGAGGAGCATGTGGGAAA
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