CX287051

Overview
NameCX287051
Unique NameCX287051
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length446
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig307 contig Ccv1_Contig307:317..762. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287051 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.552e-31
Identity = 49/73 (67.12%), Postives = 63/73 (86.30%), Query Frame = -2
Query:  227 CCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQ 445
            CCC+FEYG  CFAWGCCPLEAATCCDD+YSCCPH+YP+C++  GTCL+SK++P  V+AL+R PA P+W+ G +
Sbjct:  387 CCCLFEYGKYCFAWGCCPLEAATCCDDNYSCCPHEYPVCDLDQGTCLLSKNSPFSVKALKRKPATPFWSQGRK 459          
BLAST of CX287051 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 1.552e-31
Identity = 51/66 (77.27%), Postives = 60/66 (90.91%), Query Frame = -2
Query:  248 CCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKP 445
            CCC++EYG  C+AWGCCPLE ATCCDDHYSCCPH+YPICNV+ GTCLM+KD+PL V+AL+RT AKP
Sbjct:  379 CCCIYEYGKYCYAWGCCPLEGATCCDDHYSCCPHEYPICNVQQGTCLMAKDSPLAVKALKRTLAKP 444          
BLAST of CX287051 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 3.457e-31
Identity = 52/74 (70.27%), Postives = 61/74 (82.43%), Query Frame = -2
Query:  224 CCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQG 445
            CCC+ ++  SCF+WGCCPLE ATCC+DHYSCCPHDYPICNVR GTC MSK NPLGV+A++R  A+P  A GN G
Sbjct:  268 CCCILQFRRSCFSWGCCPLEGATCCEDHYSCCPHDYPICNVRQGTCSMSKGNPLGVKAMKRILAQPIGAFGNGG 341          
BLAST of CX287051 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 2.400e-24
Identity = 43/65 (66.15%), Postives = 50/65 (76.92%), Query Frame = -2
Query:  251 CCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAK 445
            CCC F + N C  WGCCP+E ATCC DH SCCP DYP+CN RAGTC  SK++PL V+AL+RT AK
Sbjct:  398 CCCAFGFRNLCLVWGCCPVEGATCCKDHASCCPPDYPVCNTRAGTCSASKNSPLSVKALKRTLAK 462          
BLAST of CX287051 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 3.356e-18
Identity = 34/70 (48.57%), Postives = 44/70 (62.86%), Query Frame = -2
Query:  248 CCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRA----LRRTPAKP 445
            CCC +   N C  WGCCP+E ATCC DH +CCP +YP+CN +A TC  SK++P  +R      R  P +P
Sbjct:  407 CCCNYGIRNHCIVWGCCPVEGATCCKDHSTCCPKEYPVCNAKARTCSKSKNSPYNIRTPAAMARSVPEQP 476          
The following BLAST results are available for this feature:
BLAST of CX287051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RD21A_ARATH1.552e-3167.12Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
ORYA_ORYSJ1.552e-3177.27Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
CYSPL_SOLLC3.457e-3170.27Low-temperature-induced cysteine proteinase (Fragm... [more]
ORYB_ORYSJ2.400e-2466.15Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
CYSP1_ORYSJ3.356e-1848.57Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
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Properties
Property NameValue
Genbank descriptionC01004B01SK Veg1 Citrus clementina cDNA clone C01004B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287051 ID=CX287051; Name=CX287051; organism=Citrus clementina; type=EST; length=446bp
GATTCAACGCAGATAGATAACTTACAACGCTATATACCAAACCAACGTCC
GAATAAATATTTAACAGACCATCCACCTGCCGGTACATTAACGTTTGGAA
TGAAATGCAGTAGAATGAACTAAGGCCGGGGAGAAACTCATTCACAAGCA
CGAATATTTTCATCCTCCCTTCGGCCTTCCACTGCTCTTACAGTGCCAAC
TATAATTAAGCACTGCTACTTCCACCTTGATTTCCATGAGCCCAGTAAGG
TTTAGCAGGGGTGCGTCGTAATGCCCTCACTCCCAATGGGTTGTCCTTGC
TCATCAAGCAGGTCCCAGCACGAACATTACAGATGGGATAGTCATGTGGG
CAGCAGCTATAGTGGTCATCACAGCAGGTGGCAGCCTCAAGCGGGCAGCA
TCCCCATGCAAAGCAAGAGTTACCATACTCAAAGACACAGCAGCAA
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