CX287054

Overview
NameCX287054
Unique NameCX287054
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length317
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX287054 vs. ExPASy Swiss-Prot
Match: UPL2_ARATH (E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana GN=UPL2 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 3.096e-17
Identity = 47/100 (47.00%), Postives = 59/100 (59.00%), Query Frame = 3 
Query:    9 FGDRLGGA-APPPLTDYSV-GMDSLHLSGRRGPGDGRWTDDGXXXXXXXXXXXXXXVEEHFVSQLRSVTPESNLVERQSQNSGEQERQPTDIPPIIEDQT 302
            F DRLGG  APPPLTDYSV GMDS     RRG GD RWTD G              +EEHF++ LR+  P   +VER++  +  QE+Q  D+PP +  +T
Sbjct: 2346 FSDRLGGGGAPPPLTDYSVVGMDS----SRRGVGDSRWTDVGHPQPSSLSASIAQLIEEHFITNLRASAPVDTVVERETNTTEVQEQQQPDVPPSVGSET 2441
[Close]
BLAST of CX287054 vs. ExPASy Swiss-Prot
Match: UPL1_ARATH (E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana GN=UPL1 PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 9.958e-16
Identity = 46/100 (46.00%), Postives = 58/100 (58.00%), Query Frame = 3 
Query:    9 FGDRL-GGAAPPPLTDYSV-GMDSLHLSGRRGPGDGRWTDDGXXXXXXXXXXXXXXVEEHFVSQLRSVTPESNLVERQSQNSGEQERQPTDIPPIIEDQT 302
            F  RL GG APPPLTDYSV GMDS     RRG GD RWTD G              +EEHF+S LR+  P + +VER++  +  QE+   D+PP +  +T
Sbjct: 2326 FSARLAGGGAPPPLTDYSVVGMDS----SRRGVGDSRWTDIGHPQPSSLSASIAQLIEEHFISNLRASAPVNTVVERETNTTEIQEQLHPDVPPSVGSET 2421
The following BLAST results are available for this feature:
BLAST of CX287054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UPL2_ARATH3.096e-1747.00E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis th... [more]
UPL1_ARATH9.958e-1646.00E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionC01004B07SK Veg1 Citrus clementina cDNA clone C01004B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287054 ID=CX287054; Name=CX287054; organism=Citrus clementina; type=EST; length=317bp
GTAGTCTTTTTGGTGATCGCTTGGGTGGTGCTGCACCCCCACCTTTGACT
GATTACTCCGTGGGTATGGACTCTTTGCACTTATCAGGAAGAAGAGGGCC
AGGTGATGGTCGGTGGACAGATGATGGTCAGCCACAGGCAGGTGCACAAG
CTTCTGCAATTGCACAGGCAGTGGAAGAACACTTTGTATCCCAATTGCGC
AGTGTAACTCCAGAAAGCAATCTAGTTGAAAGGCAGTCTCAGAACTCAGG
AGAGCAGGAGCGGCAACCAACAGATATTCCTCCGATCATTGAGGATCAAA
CAGCGGCAGAGGGTGAA
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