CX287138

Overview
NameCX287138
Unique NameCX287138
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287138_ssr231 microsatellite CX287138_ssr231:231..245. BLAST: Citrus ESTs to Prunus persica proteins V1
CX287138_ssr246 microsatellite CX287138_ssr246:246..257. BLAST: Citrus ESTs to Prunus persica proteins V1
CX287138_ssr394 microsatellite CX287138_ssr394:394..405. BLAST: Citrus ESTs to Prunus persica proteins V1
CX287138_ssr609 microsatellite CX287138_ssr609:609..626. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13688 contig Ccv1_Contig13688:510..1148. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287138 vs. ExPASy Swiss-Prot
Match: MYB08_ANTMA (Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.192e-20
Identity = 58/156 (37.18%), Postives = 72/156 (46.15%), Query Frame = 3
Query:   24 DRWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEDIKREKRTIGFVCKNEKQPYXXXXXXXXXXXXXXXXXXXXTCPDLNLELRISPPSSADLHQQQPLIKT 491
            ++WSLIAGRLPGRTDNEIKNYWNTHIRRKLL+RGIDP THR +N+                                         KE+  + K  +  + K E  P                      CPDLNL+L+ISPP    ++  Q  +KT
Sbjct:   87 NKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPTTHRSIND-----------------------GTASQDQVTTISFSNANSKEEDTKHKVAVDIMIKEENSP------------------VQERCPDLNLDLKISPPCQQQINYHQENLKT 201          
BLAST of CX287138 vs. ExPASy Swiss-Prot
Match: MYB4_ARATH (Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.970e-18
Identity = 38/45 (84.44%), Postives = 43/45 (95.56%), Query Frame = 3
Query:   24 DRWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNE 158
            ++WSLIAGRLPGRTDNEIKNYWNTHIRRKL+NRGIDP +HRP+ E
Sbjct:   87 NKWSLIAGRLPGRTDNEIKNYWNTHIRRKLINRGIDPTSHRPIQE 131          
BLAST of CX287138 vs. ExPASy Swiss-Prot
Match: MYB32_ARATH (Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.268e-17
Identity = 37/45 (82.22%), Postives = 43/45 (95.56%), Query Frame = 3
Query:   24 DRWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNE 158
            ++WSLIA RLPGRTDNEIKNYWNTH++RKLL +GIDPATHRP+NE
Sbjct:   87 NKWSLIATRLPGRTDNEIKNYWNTHVKRKLLRKGIDPATHRPINE 131          
BLAST of CX287138 vs. ExPASy Swiss-Prot
Match: MYB6_ARATH (Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.620e-17
Identity = 37/45 (82.22%), Postives = 42/45 (93.33%), Query Frame = 3
Query:   24 DRWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNE 158
            ++WSLIAGRLPGRTDNEIKNYWNTHI+RKLL+ GIDP THR +NE
Sbjct:   87 NKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSHGIDPQTHRQINE 131          
BLAST of CX287138 vs. ExPASy Swiss-Prot
Match: MYB1_HORVU (Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.126e-16
Identity = 37/44 (84.09%), Postives = 41/44 (93.18%), Query Frame = 3
Query:   24 DRWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLN 155
            ++WSLIAGRLPGRTDNEIKNYWNTHIRRKL +RGIDP THR +N
Sbjct:   87 NKWSLIAGRLPGRTDNEIKNYWNTHIRRKLTSRGIDPVTHRAIN 130          
BLAST of CX287138 vs. ExPASy Swiss-Prot
Match: MYB3_ARATH (Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.470e-16
Identity = 37/45 (82.22%), Postives = 43/45 (95.56%), Query Frame = 3
Query:   24 DRWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNE 158
            ++WSLIAGRLPGRTDNEIKNYWNTHI+RKLL+RGIDP +HR +NE
Sbjct:   87 NKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSRGIDPNSHRLINE 131          
BLAST of CX287138 vs. ExPASy Swiss-Prot
Match: MYB38_MAIZE (Myb-related protein Zm38 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.470e-16
Identity = 36/43 (83.72%), Postives = 40/43 (93.02%), Query Frame = 3
Query:   24 DRWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPL 152
            ++WSLIA RLPGRTDNEIKNYWNTH+RRKLL RGIDP THRP+
Sbjct:   87 NKWSLIAARLPGRTDNEIKNYWNTHVRRKLLGRGIDPVTHRPI 129          
BLAST of CX287138 vs. ExPASy Swiss-Prot
Match: MYB5_ARATH (Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.508e-16
Identity = 35/44 (79.55%), Postives = 42/44 (95.45%), Query Frame = 3
Query:   24 DRWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLN 155
            +RWSLIAGR+PGRTDNEIKNYWNTH+R+KLL +GIDP TH+PL+
Sbjct:   98 NRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPLD 141          
BLAST of CX287138 vs. ExPASy Swiss-Prot
Match: MYB30_ANTMA (Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.587e-16
Identity = 36/44 (81.82%), Postives = 41/44 (93.18%), Query Frame = 3
Query:   24 DRWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLN 155
            ++WSLIAG LPGRTDNEIKNYWNTHI+RKL++RGIDP THR LN
Sbjct:   87 NKWSLIAGALPGRTDNEIKNYWNTHIKRKLVSRGIDPQTHRSLN 130          
BLAST of CX287138 vs. ExPASy Swiss-Prot
Match: ODO1_PETHY (Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.004e-14
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 3
Query:   24 DRWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNE 158
            +RWS IA RLPGRTDNEIKN+WNTHI++KLL  GIDP TH PL +
Sbjct:   87 NRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLKK 131          
The following BLAST results are available for this feature:
BLAST of CX287138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
MYB08_ANTMA2.192e-2037.18Myb-related protein 308 OS=Antirrhinum majus GN=MY... [more]
MYB4_ARATH5.970e-1884.44Transcription repressor MYB4 OS=Arabidopsis thalia... [more]
MYB32_ARATH2.268e-1782.22Transcription factor MYB32 OS=Arabidopsis thaliana... [more]
MYB6_ARATH8.620e-1782.22Transcription repressor MYB6 OS=Arabidopsis thalia... [more]
MYB1_HORVU1.126e-1684.09Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1... [more]
MYB3_ARATH1.470e-1682.22Transcription factor MYB3 OS=Arabidopsis thaliana ... [more]
MYB38_MAIZE1.470e-1683.72Myb-related protein Zm38 OS=Zea mays PE=2 SV=1[more]
MYB5_ARATH2.508e-1679.55Transcription repressor MYB5 OS=Arabidopsis thalia... [more]
MYB30_ANTMA5.587e-1681.82Myb-related protein 330 OS=Antirrhinum majus GN=MY... [more]
ODO1_PETHY4.004e-1473.33Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionC01005B04SK Veg1 Citrus clementina cDNA clone C01005B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287138 ID=CX287138; Name=CX287138; organism=Citrus clementina; type=EST; length=639bp
CTCGTGCCGAATTCGGCACGAGGGATAGGTGGTCATTGATAGCCGGGAGG
TTACCAGGAAGAACAGACAATGAGATAAAGAATTACTGGAACACACACAT
AAGAAGGAAGCTTCTGAACAGAGGGATTGATCCTGCGACACACAGGCCAC
TCAATGAGCCAGCAGTACCTGTAGCAGCAGCTCAAAGTGCTACAACTGCT
GCTCCTGCTGATGTGGCGGCAGCGGCAGCGGCAGCAGCAGCAGCAACAAC
AACAACAATATCATTTTCGGCAGCAGCTGCAAAGGAGGATATAAAACGAG
AGAAAAGGACAATTGGGTTTGTTTGCAAAAATGAGAAACAGCCGTATCAT
CATCACAATCATCATCGTCATCAGCAGCAGCAAGTGATCGTCAAAGAAGA
AGAAGTGACGTGTCCAGACTTGAACCTTGAGCTCAGAATCAGCCCTCCAT
CATCTGCTGATCTTCATCAGCAGCAGCCATTGATTAAAACTGGAGGAAGA
AGCAGCAGCCTTTGTCTCGCTTGCAGCTTGGGATTACAAAACAGTAAAGG
TTGCAGTTGCAATAATAACAACAATAATACTAATAGTATGATCAGCAGCA
GTAACACTAGCAGCAGCAGCAGCAGCACTTGCTACGACT
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