CX287139

Overview
NameCX287139
Unique NameCX287139
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length610
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12217 contig Ccv1_Contig12217:135..744. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287139 vs. ExPASy Swiss-Prot
Match: RH22_ARATH (DEAD-box ATP-dependent RNA helicase 22 OS=Arabidopsis thaliana GN=RH22 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.220e-41
Identity = 87/163 (53.37%), Postives = 111/163 (68.10%), Query Frame = 2
Query:  122 RFLGLNQWKGRPFRGFXXXXXXXSDKNGSSDTFFADDNVTWKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQG 610
            R   LN+   +  RGF        +K G+ DTFFAD  V+WKSLGLSD +  AL +SGF RPS+ QA  +  +LSGKDV++AAETGSGKTH YL P+I++L     DSE +N ++ P P +  SL+LCPNV+LCEQVVRM N L  ++G PL+R  AVCG QG
Sbjct:   43 RLSSLNRSDRKWVRGFASATEAEVEKKGN-DTFFADHTVSWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTNREERPFPLKNISLILCPNVMLCEQVVRMVNGLVDEDGNPLLRVEAVCGSQG 204          
BLAST of CX287139 vs. ExPASy Swiss-Prot
Match: RH22_ORYSJ (DEAD-box ATP-dependent RNA helicase 22 OS=Oryza sativa subsp. japonica GN=Os09g0383400 PE=2 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 1.823e-37
Identity = 77/137 (56.20%), Postives = 100/137 (72.99%), Query Frame = 2
Query:  200 NGSSDTFFADDNVTWKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQG 610
            NG  D FF++++ +W+SLG+SD L  AL  +G  RPS+VQAA +  VL+  DV++AAETGSGKTH YLVPLIEKLC+    +E+ NS    +     +LVLCPNV+LCEQVVRMAN+L  ++GEPL  A AVCG +G
Sbjct:   70 NGDGDGFFSEESTSWESLGVSDRLASALHGAGLARPSLVQAACIPHVLTTNDVIVAAETGSGKTHGYLVPLIEKLCSKSISAEDGNSQDVTSGSPNIALVLCPNVMLCEQVVRMANSLVDESGEPLKSAAAVCGPKG 206          
BLAST of CX287139 vs. ExPASy Swiss-Prot
Match: RH16_ARATH (DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis thaliana GN=RH16 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.342e-13
Identity = 42/105 (40.00%), Postives = 67/105 (63.81%), Query Frame = 2
Query:  239 TWKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANAL 553
            +++ LGL   LIRAL   G  +P+++Q +++  +L GKDVV  A+TGSGKT +YL+PL++KL +A     +S S K+  P    + +L P+  LC+QV    ++L
Sbjct:   47 SFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQKLFSA-----DSVSKKKLAP---SAFILVPSRELCQQVYTEVSSL 143          
BLAST of CX287139 vs. ExPASy Swiss-Prot
Match: DDX56_DICDI (Probable ATP-dependent RNA helicase ddx56 OS=Dictyostelium discoideum GN=ddx56 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.976e-13
Identity = 44/110 (40.00%), Postives = 64/110 (58.18%), Query Frame = 2
Query:  227 DDNVTWKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALS 556
            D   T++S+GL + ++RAL+  GF  PS+VQ+ S+   L GKD++  A TGSGKT +Y +P+I+K+  A    E SN           ++VL P   LCEQV    N +S
Sbjct:   20 DLECTFESMGLDNRILRALKKMGFQNPSLVQSKSIPLSLQGKDILAKARTGSGKTAAYSIPIIQKVLMA---KEKSNI------KGVKAVVLVPTRELCEQVKNHFNQVS 120          
BLAST of CX287139 vs. ExPASy Swiss-Prot
Match: RH50_ARATH (DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana GN=RH50 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.190e-12
Identity = 49/141 (34.75%), Postives = 77/141 (54.61%), Query Frame = 2
Query:  194 DKNGSSDT----FFADDNVTWKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG 604
            ++N + DT    FF+    T+  +G S+ +++AL+   F RP+ +QA +  PV+ GK  +IA ++GSGKT +YLVP+I++L     +    +S   P  PR   +VL P   L  QV  +AN  S        R++ V GG
Sbjct:  358 ERNKTKDTRETGFFS--RKTFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQRL---REEELQGHSKSSPGCPRV--IVLVPTAELASQV--LANCRSISKSGVPFRSMVVTGG 489          
BLAST of CX287139 vs. ExPASy Swiss-Prot
Match: RH39_ORYSJ (DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica GN=Os01g0184500 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.007e-11
Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = 2
Query:  239 TWKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALS 556
            +++ LGL + ++ AL   G  +P+ +Q   V  VL+G  VV+ + TGSGKT +YL+PL++ L     D        +P  PRA  +VLCP   L EQV R+A ++S
Sbjct:  111 SFEELGLGEEVMAALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPLVQLL---RRDEAMLGMSMKPRRPRA--VVLCPTRELTEQVFRVAKSIS 211          
BLAST of CX287139 vs. ExPASy Swiss-Prot
Match: RH39_ARATH (DEAD-box ATP-dependent RNA helicase 39 OS=Arabidopsis thaliana GN=RH39 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.931e-11
Identity = 41/121 (33.88%), Postives = 68/121 (56.20%), Query Frame = 2
Query:  242 WKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG 604
            ++ LGLS+ ++ AL+      P+ +Q   +  V+  K VV+ + TGSGKT +YL+P+++     L   + +N  K+  P R  ++VLCP   L EQV R+A ++S        R++ V GG
Sbjct:  114 FQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQ-----LMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSIS---HHARFRSILVSGG 226          
BLAST of CX287139 vs. ExPASy Swiss-Prot
Match: RH50_ORYSJ (DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa subsp. japonica GN=Os03g0108600 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.828e-11
Identity = 42/121 (34.71%), Postives = 66/121 (54.55%), Query Frame = 2
Query:  239 TWKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 601
            ++K +G SD ++ AL + GF RPS +QA +  PVL GK  +I  ++GSGKT +YL P+++ L     +  + +S + P       +VL P   L  QV+    ++S  +G P    VA  G
Sbjct:  241 SFKEIGCSDEILGALRSFGFPRPSHIQAMAYRPVLEGKSCIIGDQSGSGKTLAYLCPVVQNLRKEEVEGLHRSSPRNPR-----VVVLTPTAELASQVLNNCRSIS-KSGVPFRSMVATGG 355          
BLAST of CX287139 vs. ExPASy Swiss-Prot
Match: MAK5_ASPOR (ATP-dependent RNA helicase mak5 OS=Aspergillus oryzae GN=mak5 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.000e-11
Identity = 38/103 (36.89%), Postives = 56/103 (54.37%), Query Frame = 2
Query:  230 DNVTWKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVR 538
            D   W+SLGLS  ++  +    F  P+ VQ A + P+L G+DV+  A TGSGKT ++ +P++E     L      +S+K  T P A  LVL P   L  Q+ +
Sbjct:  182 DVSAWESLGLSPEILAGISKMKFTTPTSVQKACIPPILDGRDVIGKASTGSGKTLAFGIPILEYYLEKLRSKTQKDSEKTETTPIA--LVLSPTRELAHQLAK 282          
BLAST of CX287139 vs. ExPASy Swiss-Prot
Match: DBP10_SCHPO (ATP-dependent RNA helicase dbp10 OS=Schizosaccharomyces pombe GN=dbp10 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.000e-11
Identity = 43/121 (35.54%), Postives = 69/121 (57.02%), Query Frame = 2
Query:  242 WKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG 604
            ++S+GL+  L+RA+   GF  P+ +Q  ++  +L G+DVV  A TGSGKT ++++P+IE L + L    NSN+          +L+L PN  L  Q V++    S       +R+VA+ GG
Sbjct:   71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLA---NSNT---------RALILSPNRELALQTVKVVKDFSKGTD---LRSVAIVGG 176          
The following BLAST results are available for this feature:
BLAST of CX287139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RH22_ARATH1.220e-4153.37DEAD-box ATP-dependent RNA helicase 22 OS=Arabidop... [more]
RH22_ORYSJ1.823e-3756.20DEAD-box ATP-dependent RNA helicase 22 OS=Oryza sa... [more]
RH16_ARATH5.342e-1340.00DEAD-box ATP-dependent RNA helicase 16 OS=Arabidop... [more]
DDX56_DICDI6.976e-1340.00Probable ATP-dependent RNA helicase ddx56 OS=Dicty... [more]
RH50_ARATH1.190e-1234.75DEAD-box ATP-dependent RNA helicase 50 OS=Arabidop... [more]
RH39_ORYSJ1.007e-1138.68DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sa... [more]
RH39_ARATH2.931e-1133.88DEAD-box ATP-dependent RNA helicase 39 OS=Arabidop... [more]
RH50_ORYSJ3.828e-1134.71DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sa... [more]
MAK5_ASPOR5.000e-1136.89ATP-dependent RNA helicase mak5 OS=Aspergillus ory... [more]
DBP10_SCHPO5.000e-1135.54ATP-dependent RNA helicase dbp10 OS=Schizosaccharo... [more]

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Properties
Property NameValue
Genbank descriptionC01005B05SK Veg1 Citrus clementina cDNA clone C01005B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287139 ID=CX287139; Name=CX287139; organism=Citrus clementina; type=EST; length=610bp
TTCATCTTCAATGTTCCACTTTTATAAACTATCATCTCCGCCTAAACTCC
TTTCCAAATTCAACGCCTCTTCTTCATGTCTCTCCAACTCTGCTCCATCT
TCATTTTATCCGCTCCGCGTCCGCTTTCTCGGGCTCAACCAATGGAAAGG
CAGACCGTTCAGGGGATTCGCGGCTGCCGCTGCTGTCGTATCGGATAAAA
ATGGATCAAGCGATACGTTCTTTGCCGACGATAATGTCACATGGAAGTCT
CTAGGCTTATCCGATCTCCTCATTCGTGCTCTCGAAAATTCCGGCTTTGG
GAGACCCTCTATTGTTCAGGCTGCTTCCGTAGGACCTGTTCTTTCAGGAA
AAGATGTTGTGATTGCGGCAGAGACTGGTAGCGGTAAAACACATAGCTAC
CTCGTCCCTCTGATTGAAAAGCTGTGCACTGCATTGGGTGATTCGGAGAA
TTCCAATTCTGATAAAGAGCCGACTCCTCCCCGTGCACCTTCTCTAGTTC
TTTGTCCAAATGTAGTACTTTGTGAACAAGTGGTTCGAATGGCTAATGCT
CTTTCTGCAGATAATGGTGAACCACTTGTACGAGCTGTAGCTGTATGTGG
AGGACAGGGA
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