CX287139
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX287139 vs. ExPASy Swiss-Prot
Match: RH22_ARATH (DEAD-box ATP-dependent RNA helicase 22 OS=Arabidopsis thaliana GN=RH22 PE=2 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 1.220e-41 Identity = 87/163 (53.37%), Postives = 111/163 (68.10%), Query Frame = 2 Query: 122 RFLGLNQWKGRPFRGFXXXXXXXSDKNGSSDTFFADDNVTWKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQG 610 R LN+ + RGF +K G+ DTFFAD V+WKSLGLSD + AL +SGF RPS+ QA + +LSGKDV++AAETGSGKTH YL P+I++L DSE +N ++ P P + SL+LCPNV+LCEQVVRM N L ++G PL+R AVCG QG Sbjct: 43 RLSSLNRSDRKWVRGFASATEAEVEKKGN-DTFFADHTVSWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTNREERPFPLKNISLILCPNVMLCEQVVRMVNGLVDEDGNPLLRVEAVCGSQG 204
BLAST of CX287139 vs. ExPASy Swiss-Prot
Match: RH22_ORYSJ (DEAD-box ATP-dependent RNA helicase 22 OS=Oryza sativa subsp. japonica GN=Os09g0383400 PE=2 SV=2) HSP 1 Score: 155.606 bits (392), Expect = 1.823e-37 Identity = 77/137 (56.20%), Postives = 100/137 (72.99%), Query Frame = 2 Query: 200 NGSSDTFFADDNVTWKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQG 610 NG D FF++++ +W+SLG+SD L AL +G RPS+VQAA + VL+ DV++AAETGSGKTH YLVPLIEKLC+ +E+ NS + +LVLCPNV+LCEQVVRMAN+L ++GEPL A AVCG +G Sbjct: 70 NGDGDGFFSEESTSWESLGVSDRLASALHGAGLARPSLVQAACIPHVLTTNDVIVAAETGSGKTHGYLVPLIEKLCSKSISAEDGNSQDVTSGSPNIALVLCPNVMLCEQVVRMANSLVDESGEPLKSAAAVCGPKG 206
BLAST of CX287139 vs. ExPASy Swiss-Prot
Match: RH16_ARATH (DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis thaliana GN=RH16 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 5.342e-13 Identity = 42/105 (40.00%), Postives = 67/105 (63.81%), Query Frame = 2 Query: 239 TWKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANAL 553 +++ LGL LIRAL G +P+++Q +++ +L GKDVV A+TGSGKT +YL+PL++KL +A +S S K+ P + +L P+ LC+QV ++L Sbjct: 47 SFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQKLFSA-----DSVSKKKLAP---SAFILVPSRELCQQVYTEVSSL 143
BLAST of CX287139 vs. ExPASy Swiss-Prot
Match: DDX56_DICDI (Probable ATP-dependent RNA helicase ddx56 OS=Dictyostelium discoideum GN=ddx56 PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 6.976e-13 Identity = 44/110 (40.00%), Postives = 64/110 (58.18%), Query Frame = 2 Query: 227 DDNVTWKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALS 556 D T++S+GL + ++RAL+ GF PS+VQ+ S+ L GKD++ A TGSGKT +Y +P+I+K+ A E SN ++VL P LCEQV N +S Sbjct: 20 DLECTFESMGLDNRILRALKKMGFQNPSLVQSKSIPLSLQGKDILAKARTGSGKTAAYSIPIIQKVLMA---KEKSNI------KGVKAVVLVPTRELCEQVKNHFNQVS 120
BLAST of CX287139 vs. ExPASy Swiss-Prot
Match: RH50_ARATH (DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana GN=RH50 PE=2 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 1.190e-12 Identity = 49/141 (34.75%), Postives = 77/141 (54.61%), Query Frame = 2 Query: 194 DKNGSSDT----FFADDNVTWKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG 604 ++N + DT FF+ T+ +G S+ +++AL+ F RP+ +QA + PV+ GK +IA ++GSGKT +YLVP+I++L + +S P PR +VL P L QV +AN S R++ V GG Sbjct: 358 ERNKTKDTRETGFFS--RKTFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQRL---REEELQGHSKSSPGCPRV--IVLVPTAELASQV--LANCRSISKSGVPFRSMVVTGG 489
BLAST of CX287139 vs. ExPASy Swiss-Prot
Match: RH39_ORYSJ (DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica GN=Os01g0184500 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.007e-11 Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = 2 Query: 239 TWKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALS 556 +++ LGL + ++ AL G +P+ +Q V VL+G VV+ + TGSGKT +YL+PL++ L D +P PRA +VLCP L EQV R+A ++S Sbjct: 111 SFEELGLGEEVMAALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPLVQLL---RRDEAMLGMSMKPRRPRA--VVLCPTRELTEQVFRVAKSIS 211
BLAST of CX287139 vs. ExPASy Swiss-Prot
Match: RH39_ARATH (DEAD-box ATP-dependent RNA helicase 39 OS=Arabidopsis thaliana GN=RH39 PE=2 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 2.931e-11 Identity = 41/121 (33.88%), Postives = 68/121 (56.20%), Query Frame = 2 Query: 242 WKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG 604 ++ LGLS+ ++ AL+ P+ +Q + V+ K VV+ + TGSGKT +YL+P+++ L + +N K+ P R ++VLCP L EQV R+A ++S R++ V GG Sbjct: 114 FQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQ-----LMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSIS---HHARFRSILVSGG 226
BLAST of CX287139 vs. ExPASy Swiss-Prot
Match: RH50_ORYSJ (DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa subsp. japonica GN=Os03g0108600 PE=2 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 3.828e-11 Identity = 42/121 (34.71%), Postives = 66/121 (54.55%), Query Frame = 2 Query: 239 TWKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 601 ++K +G SD ++ AL + GF RPS +QA + PVL GK +I ++GSGKT +YL P+++ L + + +S + P +VL P L QV+ ++S +G P VA G Sbjct: 241 SFKEIGCSDEILGALRSFGFPRPSHIQAMAYRPVLEGKSCIIGDQSGSGKTLAYLCPVVQNLRKEEVEGLHRSSPRNPR-----VVVLTPTAELASQVLNNCRSIS-KSGVPFRSMVATGG 355
BLAST of CX287139 vs. ExPASy Swiss-Prot
Match: MAK5_ASPOR (ATP-dependent RNA helicase mak5 OS=Aspergillus oryzae GN=mak5 PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.000e-11 Identity = 38/103 (36.89%), Postives = 56/103 (54.37%), Query Frame = 2 Query: 230 DNVTWKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVR 538 D W+SLGLS ++ + F P+ VQ A + P+L G+DV+ A TGSGKT ++ +P++E L +S+K T P A LVL P L Q+ + Sbjct: 182 DVSAWESLGLSPEILAGISKMKFTTPTSVQKACIPPILDGRDVIGKASTGSGKTLAFGIPILEYYLEKLRSKTQKDSEKTETTPIA--LVLSPTRELAHQLAK 282
BLAST of CX287139 vs. ExPASy Swiss-Prot
Match: DBP10_SCHPO (ATP-dependent RNA helicase dbp10 OS=Schizosaccharomyces pombe GN=dbp10 PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.000e-11 Identity = 43/121 (35.54%), Postives = 69/121 (57.02%), Query Frame = 2 Query: 242 WKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG 604 ++S+GL+ L+RA+ GF P+ +Q ++ +L G+DVV A TGSGKT ++++P+IE L + L NSN+ +L+L PN L Q V++ S +R+VA+ GG Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLA---NSNT---------RALILSPNRELALQTVKVVKDFSKGTD---LRSVAIVGG 176 The following BLAST results are available for this feature:
BLAST of CX287139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 12
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287139 ID=CX287139; Name=CX287139; organism=Citrus clementina; type=EST; length=610bpback to top |