CX287140

Overview
NameCX287140
Unique NameCX287140
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length612
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287140_ssr358 microsatellite CX287140_ssr358:358..369. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12194 contig Ccv1_Contig12194:28..639. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287140 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2)

HSP 1 Score: 310.842 bits (795), Expect = 3.391e-84
Identity = 153/198 (77.27%), Postives = 177/198 (89.39%), Query Frame = 2
Query:   17 MASHSALAPSRIPAITRIPSKTTHSFPTQCSTKRLDVAEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQ 610
            MA+H+ALA +RIP  TR PSKT+HSFP+QC++KRL+V EF+GL++ +  +Y   ARD+SF+D V AQLT K A GS  VK  TVAKLKVAINGFGRIGRNFLRCWHGRKDSPL+V+VVNDSGGVKNASHLLKYDS+LGTFKA+VKI++NETI+VDGK IKVVS+RDPL+LPWAELGIDIVIEGTGVFVDGPGAGKHIQ
Sbjct:    1 MATHAALASTRIPTNTRFPSKTSHSFPSQCASKRLEVGEFSGLKSTSCISYVHSARDSSFYDVVAAQLTSK-ANGSTAVKGVTVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVIVVNDSGGVKNASHLLKYDSMLGTFKAEVKILNNETITVDGKPIKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQ 197          
BLAST of CX287140 vs. ExPASy Swiss-Prot
Match: G3PB_ARATH (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2)

HSP 1 Score: 306.99 bits (785), Expect = 4.896e-83
Identity = 156/199 (78.39%), Postives = 173/199 (86.93%), Query Frame = 2
Query:   17 MASHSALAPSRIPAITRIPSKTT-HSFPTQCSTKRLDVAEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQ 610
            MA+H+ALA SRIP   R+ SK+  HSFP QCS+KRL+VAEF+GLR ++         +ASFFDAV AQ+ PK    S PV+ ETVAKLKVAINGFGRIGRNFLRCWHGRKDSPL+VVV+NDSGGVKNASHLLKYDS+LGTFKA+VKIVDNETISVDGKLIKVVSNRDPL+LPWAELGIDIVIEGTGVFVDGPGAGKHIQ
Sbjct:    1 MATHAALAVSRIPVTQRLQSKSAIHSFPAQCSSKRLEVAEFSGLRMSSIGG------EASFFDAVAAQIIPKAVTTSTPVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVVLNDSGGVKNASHLLKYDSMLGTFKAEVKIVDNETISVDGKLIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQ 193          
BLAST of CX287140 vs. ExPASy Swiss-Prot
Match: G3PB_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 8.352e-83
Identity = 156/200 (78.00%), Postives = 175/200 (87.50%), Query Frame = 2
Query:   17 MASHSALAPSRIPAITRIPSKTT--HSFPTQCSTKRLDVAEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQ 610
            MASH+ALAPSRIPA TR+ SK +  +SF TQCS KRLDVA+F+GLR++   T+    R+ASF D + AQLT K   G+ PV+ ETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVK+A+HLLKYDS+LGTFKADVKI+DNET S+DGK IKVVSNRDPL+LPWAELGIDIVIEGTGVFVDGPGAGKHIQ
Sbjct:    1 MASHAALAPSRIPASTRLASKASQQYSFLTQCSFKRLDVADFSGLRSSNSVTFT---REASFHDVIAAQLTTK-PTGAAPVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKSATHLLKYDSILGTFKADVKIIDNETFSIDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQ 196          
BLAST of CX287140 vs. ExPASy Swiss-Prot
Match: G3PB_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 7.087e-74
Identity = 139/169 (82.25%), Postives = 153/169 (90.53%), Query Frame = 2
Query:  104 CSTKRLDVAEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQ 610
            C +K+ +VAEFAGLR++   T++   +++SFFD V+AQLTPK    S PVK ETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDS+LGTFKADVKIVDNETISVDGK IKVVS+RDPL+LPWAELGIDIVIEGTGVFVDGPGAGKHIQ
Sbjct:    1 CLSKKFEVAEFAGLRSSGCVTFSN--KESSFFDVVSAQLTPKTTR-STPVKGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDNETISVDGKHIKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQ 166          
BLAST of CX287140 vs. ExPASy Swiss-Prot
Match: G3PA_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Zea mays GN=GAPA PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 3.784e-51
Identity = 105/163 (64.42%), Postives = 121/163 (74.23%), Query Frame = 2
Query:  125 VAEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKD-SPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQ 610
            ++EF+GLR++A       A    F  AV+ + T  V     P +  T AKLKVAINGFGRIGRNFLRCWHGR D SPLDV+ +ND+GGVK ASHLLKYDS LG F ADVK V +  ISVDGK+IKVVS+R+P  LPW ELGID+VIEGTGVFVD  GAGKHIQ
Sbjct:   19 LSEFSGLRSSASLPMRRNATSDDFMSAVSFR-THAVGTSGGPRRAPTEAKLKVAINGFGRIGRNFLRCWHGRGDASPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGDNAISVDGKVIKVVSDRNPSNLPWGELGIDLVIEGTGVFVDREGAGKHIQ 180          
BLAST of CX287140 vs. ExPASy Swiss-Prot
Match: G3PA_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPA PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.590e-49
Identity = 102/162 (62.96%), Postives = 122/162 (75.31%), Query Frame = 2
Query:  128 AEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETV-AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQ 610
            +EF+GLR ++   +     D     +V A  T  +  G+   K+  V AKLKVAINGFGRIGRNFLRCWHGRKDSPLDV+ +ND+GGVK ASHLLKYDS LG F ADVK V  + ISVDGK+I+VVS+R+P+ LPW +LGID+VIEGTGVFVD  GAGKHIQ
Sbjct:   12 SEFSGLRTSSAIPFGRKTNDDLL--SVVAFQTSVIGGGNS--KRGVVEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGTDGISVDGKVIQVVSDRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQ 169          
BLAST of CX287140 vs. ExPASy Swiss-Prot
Match: G3PA_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Spinacia oleracea GN=GAPA PE=1 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 2.076e-49
Identity = 102/161 (63.35%), Postives = 120/161 (74.53%), Query Frame = 2
Query:  128 AEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQ 610
            +EF+GL  ++      G+ D   F  V+ Q T  V            AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVV+ND+GGVK ASHLLKYDS+LGTF ADVK   +  ISVDGK+IKVVS+R+P+ LPW ++GID+VIEGTGVFVD  GAGKH+Q
Sbjct:   21 SEFSGLHTSSLPFGRKGSDDLMAF--VSFQ-TNAVGGKRSSQNGVVEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQ 178          
BLAST of CX287140 vs. ExPASy Swiss-Prot
Match: G3PA_ARATH (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3)

HSP 1 Score: 194.897 bits (494), Expect = 2.712e-49
Identity = 99/160 (61.88%), Postives = 118/160 (73.75%), Query Frame = 2
Query:  131 EFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQ 610
            EF+GLR+++ +        +  F ++ +  T  + +     K  T AKLKVAINGFGRIGRNFLRCWHGRKDSPLD++ +ND+GGVK ASHLLKYDS LG F ADVK      ISVDGK+I+VVSNR+P  LPW ELGIDIVIEGTGVFVD  GAGKHI+
Sbjct:   14 EFSGLRSSSASLPFGKKLSSDEFVSIVSFQTSAMGSSGGYRKGVTEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTGGVKQASHLLKYDSTLGIFDADVKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIE 173          
BLAST of CX287140 vs. ExPASy Swiss-Prot
Match: G3PA_PEA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Pisum sativum GN=GAPA PE=2 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 5.114e-48
Identity = 100/161 (62.11%), Postives = 116/161 (72.05%), Query Frame = 2
Query:  128 AEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAK-LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHI 607
            +EF+GLR ++     +      F   VT Q     ++G         AK LKVAINGFGRIGRNFLRCWHGRKDSPLDV+ +ND+GGVK ASHLLKYDS LG F ADVK V  + ISVDGK+IKVVS+R+P  LPW ELGID+VIEGTGVFVD  GAG+HI
Sbjct:   21 SEFSGLRNSSRHLPFSRKSSDDFHSLVTFQTNAVGSSGGHKKSLVVEAKQLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGTDGISVDGKVIKVVSDRNPANLPWKELGIDLVIEGTGVFVDREGAGRHI 181          
BLAST of CX287140 vs. ExPASy Swiss-Prot
Match: G3PA_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Chlamydomonas reinhardtii GN=GAPA PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.114e-48
Identity = 94/128 (73.44%), Postives = 107/128 (83.59%), Query Frame = 2
Query:  227 KVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQ 610
            K A   V V+ E   K++VAINGFGRIGRNFLRCWHGR+++ LDVV +NDSGGVK ASHLLKYDS LGTF ADVKIVD+  ISVDGK IK+VS+RDPLQLPW E+ ID+VIEGTGVF+D  GAGKHIQ
Sbjct:   24 KAARAVVDVRAEK--KIRVAINGFGRIGRNFLRCWHGRQNTLLDVVAINDSGGVKQASHLLKYDSTLGTFAADVKIVDDSHISVDGKQIKIVSSRDPLQLPWKEMNIDLVIEGTGVFIDKVGAGKHIQ 149          
The following BLAST results are available for this feature:
BLAST of CX287140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
G3PB_PEA3.391e-8477.27Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_ARATH4.896e-8378.39Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_SPIOL8.352e-8378.00Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_TOBAC7.087e-7482.25Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PA_MAIZE3.784e-5164.42Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_TOBAC1.590e-4962.96Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_SPIOL2.076e-4963.35Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_ARATH2.712e-4961.88Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_PEA5.114e-4862.11Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_CHLRE5.114e-4873.44Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]

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Properties
Property NameValue
Genbank descriptionC01005B06SK Veg1 Citrus clementina cDNA clone C01005B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287140 ID=CX287140; Name=CX287140; organism=Citrus clementina; type=EST; length=612bp
AACTAAGCCACAGGCCATGGCCAGTCACTCAGCTCTTGCTCCCTCAAGAA
TCCCGGCCATCACTAGGATTCCATCCAAGACTACTCACTCTTTTCCCACT
CAATGCTCCACCAAGAGGCTGGATGTGGCTGAATTCGCTGGCCTTCGAGC
AAATGCAGGCGCGACATACGCCACTGGTGCTAGAGATGCATCCTTCTTTG
ATGCTGTGACTGCTCAACTTACTCCTAAGGTTGCAGCAGGATCAGTTCCT
GTAAAGAAAGAAACCGTGGCCAAATTGAAGGTGGCAATTAATGGATTTGG
ACGTATTGGCAGGAACTTCCTCCGATGCTGGCACGGCAGGAAAGACTCAC
CCCTTGATGTTGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGCTTCA
CACCTTCTAAAATATGACTCATTGCTTGGAACTTTTAAAGCAGACGTGAA
AATAGTGGACAACGAGACCATCTCTGTCGATGGTAAGCTCATCAAGGTTG
TCTCTAACAGGGACCCTCTCCAGCTCCCTTGGGCTGAGCTCGGAATTGAC
ATCGTTATTGAGGGAACAGGAGTTTTTGTGGACGGCCCTGGTGCTGGAAA
GCACATCCAAGC
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