CX287145

Overview
NameCX287145
Unique NameCX287145
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287145_ssr482 microsatellite CX287145_ssr482:482..493. BLAST: Citrus ESTs to Prunus persica proteins V1
CX287145_ssr49 microsatellite CX287145_ssr49:49..60. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig31 contig Ccv1_Contig31:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287145 vs. ExPASy Swiss-Prot
Match: P2C60_ARATH (Probable protein phosphatase 2C 60 OS=Arabidopsis thaliana GN=At4g31860 PE=2 SV=1)

HSP 1 Score: 407.527 bits (1046), Expect = 3.156e-113
Identity = 190/221 (85.97%), Postives = 211/221 (95.48%), Query Frame = 3
Query:    9 GQRGWRELAVLGDKINKFTGMIEGLIWSPRGGDSNDQPNDWAFEEGPHSDFAGPTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTM 671
            GQRGWRELAVLGDKINKF+GMIEGLIWSPR GDS ++P+ WAFEEGPHSDFAGP SGSTACVA++R+  L VANAGDSRCVISRK QAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNL+RAIGDMEFKQNKFL +EKQIVTA+PD+N+VELCDDDDF+VLACDGIWDCM+SQQLVDFIHEQL+SE+K+S VCE+VL+RCLAP+T+GGEGCDNMTM
Sbjct:  104 GQRGWRELAVLGDKINKFSGMIEGLIWSPRSGDSANKPDAWAFEEGPHSDFAGPNSGSTACVAVVRDKQLFVANAGDSRCVISRKNQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLSRAIGDMEFKQNKFLPSEKQIVTASPDVNTVELCDDDDFLVLACDGIWDCMTSQQLVDFIHEQLNSETKLSVVCEKVLDRCLAPNTSGGEGCDNMTM 324          
BLAST of CX287145 vs. ExPASy Swiss-Prot
Match: P2C58_ORYSJ (Probable protein phosphatase 2C 58 OS=Oryza sativa subsp. japonica GN=Os06g0651600 PE=2 SV=1)

HSP 1 Score: 397.897 bits (1021), Expect = 2.501e-110
Identity = 184/221 (83.26%), Postives = 207/221 (93.67%), Query Frame = 3
Query:    9 GQRGWRELAVLGDKINKFTGMIEGLIWSPRGGDSNDQPNDWAFEEGPHSDFAGPTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTM 671
            GQRGWREL  LGDKIN+ +GMIEGLIWSPRG DSNDQ +DWAFEEGPHSDFAGPT GSTACVAI+RN+ L+VANAGDSRCVISR GQAYNLSRDHKP+LEAE+ERILKAGG+I  GRVNG++NL+RAIGD+EFKQNKFLS +KQ++TANPDIN+VELCDDDDF+VLACDGIWDCMSSQQLVDFIHE +++ES +SAVCERVL+RCLAPST GGEGCDNMTM
Sbjct:  104 GQRGWRELQALGDKINQISGMIEGLIWSPRGSDSNDQHDDWAFEEGPHSDFAGPTCGSTACVAIVRNSQLVVANAGDSRCVISRNGQAYNLSRDHKPELEAERERILKAGGYIQMGRVNGTINLSRAIGDIEFKQNKFLSPDKQMLTANPDINTVELCDDDDFLVLACDGIWDCMSSQQLVDFIHEHINTESSLSAVCERVLDRCLAPSTLGGEGCDNMTM 324          
BLAST of CX287145 vs. ExPASy Swiss-Prot
Match: P2C11_ORYSJ (Probable protein phosphatase 2C 11 OS=Oryza sativa subsp. japonica GN=Os02g0180000 PE=2 SV=1)

HSP 1 Score: 397.127 bits (1019), Expect = 4.266e-110
Identity = 186/221 (84.16%), Postives = 201/221 (90.95%), Query Frame = 3
Query:    9 GQRGWRELAVLGDKINKFTGMIEGLIWSPRGGDSNDQPNDWAFEEGPHSDFAGPTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTM 671
            GQRGWREL+ LGDKINK  GMIEGLIWSPRG DSN+  +DW+FEEGPHSDFAGPT G TACVA+IRNN L+VANAGDSRCVISR GQAYNLSRDHKP+LEAE++RI+KAGGFIH GR+NGSLNL RAIGDMEFKQNKFL  EKQIVTANPDIN VELCDDDDF+VLACDGIWDCMSSQQLVDFIHE +  ES +SAVCERVL+RCLAPST GGEGCDNMTM
Sbjct:  104 GQRGWRELSALGDKINKIGGMIEGLIWSPRGSDSNNGQDDWSFEEGPHSDFAGPTCGCTACVALIRNNQLVVANAGDSRCVISRAGQAYNLSRDHKPELEAERDRIVKAGGFIHMGRINGSLNLTRAIGDMEFKQNKFLPPEKQIVTANPDINVVELCDDDDFLVLACDGIWDCMSSQQLVDFIHEHIQKESSLSAVCERVLDRCLAPSTIGGEGCDNMTM 324          
BLAST of CX287145 vs. ExPASy Swiss-Prot
Match: P2C21_ARATH (Probable protein phosphatase 2C 21 OS=Arabidopsis thaliana GN=PPC4-2 PE=2 SV=1)

HSP 1 Score: 387.882 bits (995), Expect = 2.588e-107
Identity = 177/221 (80.09%), Postives = 203/221 (91.86%), Query Frame = 3
Query:    9 GQRGWRELAVLGDKINKFTGMIEGLIWSPRGGDSNDQPNDWAFEEGPHSDFAGPTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTM 671
            GQRGWRELAVLGDK+NKF+GMIEG IWSPR GD+N+QP+ W  E+GPHSDF GPTSG TACVA+I++  L VANAGDSRCVISRK QAYNLS+DHKPDLE EKERILKAGGFIHAGR+NGSLNL RAIGDMEFKQNKFL +EKQ+VTA+PDIN+++LCDDDDF+V+ACDGIWDCMSSQ+LVDFIHEQL SE+K+S VCE+V++RCLAP TA GEGCDNMT+
Sbjct:  104 GQRGWRELAVLGDKMNKFSGMIEGFIWSPRSGDTNNQPDSWPLEDGPHSDFTGPTSGCTACVALIKDKKLFVANAGDSRCVISRKSQAYNLSKDHKPDLEVEKERILKAGGFIHAGRINGSLNLTRAIGDMEFKQNKFLPSEKQMVTADPDINTIDLCDDDDFLVVACDGIWDCMSSQELVDFIHEQLKSETKLSTVCEKVVDRCLAPDTATGEGCDNMTI 324          
BLAST of CX287145 vs. ExPASy Swiss-Prot
Match: P2C70_ORYSJ (Probable protein phosphatase 2C 70 OS=Oryza sativa subsp. japonica GN=Os09g0558000 PE=2 SV=2)

HSP 1 Score: 345.51 bits (885), Expect = 1.473e-94
Identity = 163/221 (73.76%), Postives = 198/221 (89.59%), Query Frame = 3
Query:    9 GQRGWRELAVLGDKINKFTGMIEGLIWSPRGGDSNDQPNDWAFEEGPHSDFAGPTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTM 671
            GQRGWRELA LGDK  KFTGM+EG+IWSP+ G+S D+P D   EEGPHS F GPTSGSTACVAIIRN+ LIVANAGDSRCV+SRKG+AY+LS+DHKPDL+AEKERIL AGGFI AGRVNGSLNLARAIGDME KQN+FL AE+QIVTA P++N+V+L +DD+F+VLACDGIWDCMSSQ++VDF+H+++++E  +SAVCE++L+ CLAP  +GG+GCDNMT+
Sbjct:  104 GQRGWRELAELGDKGQKFTGMLEGIIWSPKPGES-DKPEDTWTEEGPHSHFPGPTSGSTACVAIIRNDELIVANAGDSRCVLSRKGRAYDLSKDHKPDLDAEKERILNAGGFIVAGRVNGSLNLARAIGDMELKQNEFLPAERQIVTAEPELNTVKLSEDDEFIVLACDGIWDCMSSQEVVDFVHKEMNTEDSLSAVCEKLLDHCLAP-VSGGDGCDNMTV 322          
BLAST of CX287145 vs. ExPASy Swiss-Prot
Match: Y0417_DROME (Probable protein phosphatase CG10417 OS=Drosophila melanogaster GN=CG10417 PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.264e-45
Identity = 90/170 (52.94%), Postives = 122/170 (71.76%), Query Frame = 3
Query:  165 GPTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHA-GRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAG-GEGCDNMT 668
            G  SG TA V +++   L VANAGDSRCVISR GQA  +S DHKP+ + E  RI+KAGG +   GRVNG LNL+RA+GD  +K N  L AE+Q+++A PDI  + +  +D+F+VLACDGIW+ MSS+++V+F+  +L    K+S +CE + + CLAP+T G G GCDNMT
Sbjct:  389 GKDSGCTAVVCLLQGRDLYVANAGDSRCVISRSGQAIEMSIDHKPEDDEEASRIIKAGGRVTLDGRVNGGLNLSRALGDHAYKTNVTLPAEEQMISALPDIKKLIITPEDEFMVLACDGIWNYMSSEEVVEFVRCRLKDNKKLSTICEELFDNCLAPNTMGDGTGCDNMT 558          
BLAST of CX287145 vs. ExPASy Swiss-Prot
Match: PPM1G_MACFA (Protein phosphatase 1G OS=Macaca fascicularis GN=PPM1G PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.679e-45
Identity = 94/176 (53.41%), Postives = 126/176 (71.59%), Query Frame = 3
Query:  165 GPTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHA-GRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESK------ISAVCERVLERCLAPSTAG-GEGCDNMT 668
            G  SG+TA VA+IR   LIVANAGDSRCV+S  G+A ++S DHKP+ E E  RI  AGG +   GRVNG LNL+RAIGD  +K+NK L  E+Q+++A PDI  + L DD +F+V+ACDGIW+ MSSQ++VDFI  ++    +      +S++ E +L++CLAP T+G G GCDNMT
Sbjct:  325 GSDSGTTAVVALIRGKQLIVANAGDSRCVVSEAGKALDMSYDHKPEDEVELARIKNAGGKVTMDGRVNGGLNLSRAIGDHFYKRNKNLPPEEQMISALPDIKVLTLTDDHEFMVIACDGIWNVMSSQEVVDFIQSKISQRDENGELRLLSSIVEELLDQCLAPDTSGDGTGCDNMT 500          
BLAST of CX287145 vs. ExPASy Swiss-Prot
Match: PPM1G_HUMAN (Protein phosphatase 1G OS=Homo sapiens GN=PPM1G PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.679e-45
Identity = 94/176 (53.41%), Postives = 126/176 (71.59%), Query Frame = 3
Query:  165 GPTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHA-GRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESK------ISAVCERVLERCLAPSTAG-GEGCDNMT 668
            G  SG+TA VA+IR   LIVANAGDSRCV+S  G+A ++S DHKP+ E E  RI  AGG +   GRVNG LNL+RAIGD  +K+NK L  E+Q+++A PDI  + L DD +F+V+ACDGIW+ MSSQ++VDFI  ++    +      +S++ E +L++CLAP T+G G GCDNMT
Sbjct:  324 GSDSGTTAVVALIRGKQLIVANAGDSRCVVSEAGKALDMSYDHKPEDEVELARIKNAGGKVTMDGRVNGGLNLSRAIGDHFYKRNKNLPPEEQMISALPDIKVLTLTDDHEFMVIACDGIWNVMSSQEVVDFIQSKISQRDENGELRLLSSIVEELLDQCLAPDTSGDGTGCDNMT 499          
BLAST of CX287145 vs. ExPASy Swiss-Prot
Match: PPM1G_BOVIN (Protein phosphatase 1G OS=Bos taurus GN=PPM1G PE=2 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 4.805e-45
Identity = 93/176 (52.84%), Postives = 126/176 (71.59%), Query Frame = 3
Query:  165 GPTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHA-GRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESK------ISAVCERVLERCLAPSTAG-GEGCDNMT 668
            G  SG+TA VA+IR   LIVANAGDSRCV+S  G+A ++S DHKP+ E E  RI  AGG +   GRVNG LNL+RAIGD  +K+NK L  E+Q+++A PDI  + L DD +F+V+ACDGIW+ MSSQ+++DFI  ++    +      +S++ E +L++CLAP T+G G GCDNMT
Sbjct:  322 GSDSGTTAVVALIRGKQLIVANAGDSRCVVSEAGKALDMSYDHKPEDEVELARIKNAGGKVTMDGRVNGGLNLSRAIGDHFYKRNKNLPPEEQMISALPDIKVLTLTDDHEFMVIACDGIWNVMSSQEVIDFIQSKISQRDENGELRLLSSIVEELLDQCLAPDTSGDGTGCDNMT 497          
BLAST of CX287145 vs. ExPASy Swiss-Prot
Match: PPM1G_MOUSE (Protein phosphatase 1G OS=Mus musculus GN=Ppm1g PE=2 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 8.196e-45
Identity = 93/176 (52.84%), Postives = 126/176 (71.59%), Query Frame = 3
Query:  165 GPTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHA-GRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESK------ISAVCERVLERCLAPSTAG-GEGCDNMT 668
            G  SG+TA VA+IR   LIVANAGDSRCV+S  G+A ++S DHKP+ E E  RI  AGG +   GRVNG LNL+RAIGD  +K+NK L  ++Q+++A PDI  + L DD +F+V+ACDGIW+ MSSQ++VDFI  ++    +      +S++ E +L++CLAP T+G G GCDNMT
Sbjct:  321 GSDSGTTAVVALIRGKQLIVANAGDSRCVVSEAGKALDMSYDHKPEDEVELARIKNAGGKVTMDGRVNGGLNLSRAIGDHFYKRNKNLPPQEQMISALPDIKVLTLTDDHEFMVIACDGIWNVMSSQEVVDFIQSKISQRDENGELRLLSSIVEELLDQCLAPDTSGDGTGCDNMT 496          
The following BLAST results are available for this feature:
BLAST of CX287145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
P2C60_ARATH3.156e-11385.97Probable protein phosphatase 2C 60 OS=Arabidopsis ... [more]
P2C58_ORYSJ2.501e-11083.26Probable protein phosphatase 2C 58 OS=Oryza sativa... [more]
P2C11_ORYSJ4.266e-11084.16Probable protein phosphatase 2C 11 OS=Oryza sativa... [more]
P2C21_ARATH2.588e-10780.09Probable protein phosphatase 2C 21 OS=Arabidopsis ... [more]
P2C70_ORYSJ1.473e-9473.76Probable protein phosphatase 2C 70 OS=Oryza sativa... [more]
Y0417_DROME1.264e-4552.94Probable protein phosphatase CG10417 OS=Drosophila... [more]
PPM1G_MACFA3.679e-4553.41Protein phosphatase 1G OS=Macaca fascicularis GN=P... [more]
PPM1G_HUMAN3.679e-4553.41Protein phosphatase 1G OS=Homo sapiens GN=PPM1G PE... [more]
PPM1G_BOVIN4.805e-4552.84Protein phosphatase 1G OS=Bos taurus GN=PPM1G PE=2... [more]
PPM1G_MOUSE8.196e-4552.84Protein phosphatase 1G OS=Mus musculus GN=Ppm1g PE... [more]

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Properties
Property NameValue
Genbank descriptionC01005B11SK Veg1 Citrus clementina cDNA clone C01005B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287145 ID=CX287145; Name=CX287145; organism=Citrus clementina; type=EST; length=671bp
CACGAGGGGGACAAAGAGGATGGAGAGAATTAGCTGTTTTGGGAGATAAA
ATAAATAAATTCACTGGCATGATAGAAGGGTTGATATGGTCTCCAAGGGG
TGGTGATAGTAATGATCAACCTAATGATTGGGCTTTTGAGGAGGGCCCTC
ACTCTGATTTTGCTGGACCAACTTCTGGAAGCACAGCCTGTGTTGCAATT
ATCAGAAACAATCATCTCATTGTTGCAAATGCTGGTGATTCTCGATGCGT
GATATCTAGAAAGGGCCAGGCATATAATCTCTCAAGAGATCACAAACCAG
ATCTTGAAGCTGAGAAAGAAAGGATATTGAAAGCTGGTGGATTTATACAT
GCAGGACGAGTCAATGGTAGTTTGAATCTTGCAAGAGCAATAGGTGACAT
GGAATTCAAGCAGAACAAATTTTTGTCTGCTGAAAAGCAAATTGTTACTG
CCAATCCAGATATAAACTCTGTTGAGCTGTGTGATGATGATGATTTCGTT
GTGCTGGCGTGTGATGGAATCTGGGATTGCATGTCAAGCCAGCAATTAGT
AGATTTTATTCATGAACAACTACATTCGGAAAGCAAGATTTCTGCTGTGT
GCGAGAGAGTACTCGAGAGATGTTTGGCGCCATCAACAGCAGGAGGTGAG
GGATGTGACAACATGACCATG
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