CX287152

Overview
NameCX287152
Unique NameCX287152
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length604
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287152 vs. ExPASy Swiss-Prot
Match: YCF36_PORPU (Uncharacterized protein ycf36 OS=Porphyra purpurea GN=ycf36 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.373e-19
Identity = 47/113 (41.59%), Postives = 70/113 (61.95%), Query Frame = 1
Query:  265 VPSEQRPVNEYSSLKDGVLYSWGELGQGPFILRLGGLWLVAFMVLGVPTAAASFDPSREPLRFVLAAGTGTLFLASLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGRMWVK 603
            VP EQ+PVNEY+SLK+   + W  L    +  ++  + L+A   L  P   + F  ++ PL+F  +    +  +   I++R+YLGWSYV  RL+SA + YEESGWYDG++WVK
Sbjct:   10 VPLEQQPVNEYNSLKNSWFFCWPTLSSHSYNKKIT-ITLIATCFLVSPVLLSIFPIAKLPLKFFFSEFIISSLITCFILIRLYLGWSYVVKRLMSATVFYEESGWYDGQIWVK 121          
BLAST of CX287152 vs. ExPASy Swiss-Prot
Match: YCF36_PORYE (Uncharacterized protein ycf36 OS=Porphyra yezoensis GN=ycf36 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.131e-18
Identity = 45/113 (39.82%), Postives = 71/113 (62.83%), Query Frame = 1
Query:  265 VPSEQRPVNEYSSLKDGVLYSWGELGQGPFILRLGGLWLVAFMVLGVPTAAASFDPSREPLRFVLAAGTGTLFLASLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGRMWVK 603
            VP EQ+PV+EY+SLK+   + W  L +  +  ++  + L+   +L  P   + F  ++ PL+F  +    +  +   I++R+YLGWSYV  RL+SA + YEESGWYDG++WVK
Sbjct:   10 VPKEQQPVHEYTSLKNSWFFCWPTLSRRSYNKKIT-IALLLNCLLVSPILLSIFPITKLPLKFFFSEFITSSLMTGFILIRLYLGWSYVVKRLMSATVFYEESGWYDGQIWVK 121          
BLAST of CX287152 vs. ExPASy Swiss-Prot
Match: YCF36_CYAPA (Uncharacterized protein ycf36 OS=Cyanophora paradoxa GN=ycf36 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.866e-16
Identity = 43/113 (38.05%), Postives = 66/113 (58.41%), Query Frame = 1
Query:  265 VPSEQRPVNEYSSLKDGVLYSWGELGQGPFILRLGGLWLVAFMVLGVPTAAASFDPSREPLRFVLAAGTGTLFLASLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGRMWVK 603
            +P+EQ+P+NEY  L + VL++W       +   L  ++ + F++  + T          P+   +    G  F+  L +LR+YLGWSY+  RLLSA + YEESGWYDG++WVK
Sbjct:    7 IPTEQQPLNEYQILNNSVLFNWPSQKLKIYFFYLFTIYSIGFLLTFLITFYNDLFIVH-PVNIFVHGIIGGNFVLILDLLRLYLGWSYICQRLLSATVSYEESGWYDGQIWVK 118          
BLAST of CX287152 vs. ExPASy Swiss-Prot
Match: YCF36_GUITH (Uncharacterized protein ycf36 OS=Guillardia theta GN=ycf36 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.388e-11
Identity = 43/116 (37.07%), Postives = 64/116 (55.17%), Query Frame = 1
Query:  265 VPSEQRPVNEYSSLKDGVLYSWG-ELGQ--GPFILRLGGLWLVAFMVLGVPTAAASFDPSREPLRFVLAAGTGTLFLASLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGRMWVK 603
            VP  Q P+NEY+ L     +SW  ++G+    F+L++  L L  F  + +    + ++     L         TLF+  LI LR YLG+ Y+  RLL + +PYEES WYDG++WVK
Sbjct:    5 VPENQLPINEYNKLTSAWDFSWACKIGKLYYKFLLKMQ-LCLFLFFCICLNFLDSKYETGLYSLIL------STLFIC-LICLRTYLGFRYIYVRLLKSALPYEESSWYDGQVWVK 112          
The following BLAST results are available for this feature:
BLAST of CX287152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
YCF36_PORPU6.373e-1941.59Uncharacterized protein ycf36 OS=Porphyra purpurea... [more]
YCF36_PORYE4.131e-1839.82Uncharacterized protein ycf36 OS=Porphyra yezoensi... [more]
YCF36_CYAPA3.866e-1638.05Uncharacterized protein ycf36 OS=Cyanophora parado... [more]
YCF36_GUITH6.388e-1137.07Uncharacterized protein ycf36 OS=Guillardia theta ... [more]
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Properties
Property NameValue
Genbank descriptionC01005C06SK Veg1 Citrus clementina cDNA clone C01005C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287152 ID=CX287152; Name=CX287152; organism=Citrus clementina; type=EST; length=604bp
TAACTGAATCCGAAAGTGGAATTAGTTCAGGTCTTAAGCTGCTGCAATTC
CACAAAATAAATGATCAGACTAAATGCCTATTGCTCTACACTTCCGAGTG
CAGCGCAAGTCAAGCTTGGAAGCAGCTATGGTTCATTTATAATCAAGAAC
TACAAAGCTCGAAAGTCATCCTGGGGGGTCTCTGTAAGGGCCTTAAAAGA
TGAAACAAATGGAGGGACAAGCAGCTCTGCTGGCAGGAGTTGGGAACCTG
GCTTGGAAATTGAGGTGCCTTCTGAGCAAAGACCGGTGAACGAGTACTCT
TCTCTGAAAGATGGAGTTCTATACTCTTGGGGCGAACTGGGACAAGGGCC
ATTTATCCTTCGTCTTGGGGGTCTTTGGCTAGTAGCTTTCATGGTTCTTG
GAGTTCCAACTGCAGCTGCAAGCTTTGATCCTTCAAGGGAACCCCTGAGA
TTTGTGCTAGCAGCTGGAACAGGAACTCTTTTCCTTGCATCGTTAATCGT
CTTACGGATATATCTGGGATGGAGTTACGTTGGCGATAGACTTCTATCAG
CAGTGATACCATATGAAGAAAGTGGATGGTATGATGGACGAATGTGGGTA
AAGC
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