CX287154

Overview
NameCX287154
Unique NameCX287154
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length583
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287154 vs. ExPASy Swiss-Prot
Match: PUM2_MOUSE (Pumilio homolog 2 OS=Mus musculus GN=Pum2 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.019e-15
Identity = 38/74 (51.35%), Postives = 55/74 (74.32%), Query Frame = -2
Query:  364 ERQLLVDEMLGSTD-ENEPLQAMMKDQFANYVVQKVLETCEDQQRELILSRIKVHLNALKKYTYGKHIVARVEK 582
            ER LL+DE+    D  +  L  MMKDQ+ANYVVQK+++  E  QR++I+ +I+ H+  L+KYTYGKHI+A++EK
Sbjct:  973 ERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEK 1046          
BLAST of CX287154 vs. ExPASy Swiss-Prot
Match: PUM2_HUMAN (Pumilio homolog 2 OS=Homo sapiens GN=PUM2 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.019e-15
Identity = 38/74 (51.35%), Postives = 55/74 (74.32%), Query Frame = -2
Query:  364 ERQLLVDEMLGSTD-ENEPLQAMMKDQFANYVVQKVLETCEDQQRELILSRIKVHLNALKKYTYGKHIVARVEK 582
            ER LL+DE+    D  +  L  MMKDQ+ANYVVQK+++  E  QR++I+ +I+ H+  L+KYTYGKHI+A++EK
Sbjct:  973 ERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEK 1046          
BLAST of CX287154 vs. ExPASy Swiss-Prot
Match: PUM1_CHICK (Pumilio homolog 1 OS=Gallus gallus GN=PUM1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.783e-15
Identity = 36/74 (48.65%), Postives = 55/74 (74.32%), Query Frame = -2
Query:  364 ERQLLVDEMLGSTD-ENEPLQAMMKDQFANYVVQKVLETCEDQQRELILSRIKVHLNALKKYTYGKHIVARVEK 582
            ER +L+DE+    D  +  L  MMKDQ+ANYVVQK+++  E  QR++++ +I+ H+  L+KYTYGKHI+A++EK
Sbjct: 1096 ERAMLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHKIRPHIATLRKYTYGKHILAKLEK 1169          
BLAST of CX287154 vs. ExPASy Swiss-Prot
Match: PUM1_PONAB (Pumilio homolog 1 OS=Pongo abelii GN=PUM1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.498e-14
Identity = 36/74 (48.65%), Postives = 55/74 (74.32%), Query Frame = -2
Query:  364 ERQLLVDEMLGSTD-ENEPLQAMMKDQFANYVVQKVLETCEDQQRELILSRIKVHLNALKKYTYGKHIVARVEK 582
            ER +L+DE+    D  +  L  MMKDQ+ANYVVQK+++  E  QR++++ +I+ H+  L+KYTYGKHI+A++EK
Sbjct: 1093 ERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEK 1166          
BLAST of CX287154 vs. ExPASy Swiss-Prot
Match: PUM1_MOUSE (Pumilio homolog 1 OS=Mus musculus GN=Pum1 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.498e-14
Identity = 36/74 (48.65%), Postives = 55/74 (74.32%), Query Frame = -2
Query:  364 ERQLLVDEMLGSTD-ENEPLQAMMKDQFANYVVQKVLETCEDQQRELILSRIKVHLNALKKYTYGKHIVARVEK 582
            ER +L+DE+    D  +  L  MMKDQ+ANYVVQK+++  E  QR++++ +I+ H+  L+KYTYGKHI+A++EK
Sbjct: 1096 ERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEK 1169          
BLAST of CX287154 vs. ExPASy Swiss-Prot
Match: PUM1_HUMAN (Pumilio homolog 1 OS=Homo sapiens GN=PUM1 PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 1.498e-14
Identity = 36/74 (48.65%), Postives = 55/74 (74.32%), Query Frame = -2
Query:  364 ERQLLVDEMLGSTD-ENEPLQAMMKDQFANYVVQKVLETCEDQQRELILSRIKVHLNALKKYTYGKHIVARVEK 582
            ER +L+DE+    D  +  L  MMKDQ+ANYVVQK+++  E  QR++++ +I+ H+  L+KYTYGKHI+A++EK
Sbjct: 1093 ERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEK 1166          
BLAST of CX287154 vs. ExPASy Swiss-Prot
Match: PUM_DROME (Maternal protein pumilio OS=Drosophila melanogaster GN=pum PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 8.220e-13
Identity = 36/73 (49.32%), Postives = 53/73 (72.60%), Query Frame = -2
Query:  364 ERQLLVDEMLGSTDENEPLQAMMKDQFANYVVQKVLETCEDQQRELILSRIKVHLNALKKYTYGKHIVARVEK 582
            ER  L+DE+   T  +  L  MMKDQ+ANYVVQK+++  E  Q + ++++I+ H+ AL+KYTYGKHI A++EK
Sbjct: 1356 ERTGLIDEVC--TFNDNALHVMMKDQYANYVVQKMIDVSEPTQLKKLMTKIRPHMAALRKYTYGKHINAKLEK 1426          
BLAST of CX287154 vs. ExPASy Swiss-Prot
Match: PUF3_SCHPO (mRNA-binding protein puf3 OS=Schizosaccharomyces pombe GN=puf3 PE=2 SV=4)

HSP 1 Score: 70.0922 bits (170), Expect = 9.088e-12
Identity = 30/74 (40.54%), Postives = 55/74 (74.32%), Query Frame = -2
Query:  364 ERQLLVDEMLGSTDEN-EPLQAMMKDQFANYVVQKVLETCEDQQRELILSRIKVHLNALKKYTYGKHIVARVEK 582
            +R+ ++++++    EN   L  MMKD++ANYV+QK+L+   +++R+L++S I  H++ LKK+TYGKH++  VE+
Sbjct:  641 DRRRILNKIISEKAENCSILMLMMKDKYANYVIQKLLDASPEEERDLLISYIYPHISVLKKFTYGKHLIMSVER 714          
The following BLAST results are available for this feature:
BLAST of CX287154 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PUM2_MOUSE3.019e-1551.35Pumilio homolog 2 OS=Mus musculus GN=Pum2 PE=1 SV=... [more]
PUM2_HUMAN3.019e-1551.35Pumilio homolog 2 OS=Homo sapiens GN=PUM2 PE=1 SV=... [more]
PUM1_CHICK8.783e-1548.65Pumilio homolog 1 OS=Gallus gallus GN=PUM1 PE=2 SV... [more]
PUM1_PONAB1.498e-1448.65Pumilio homolog 1 OS=Pongo abelii GN=PUM1 PE=2 SV=... [more]
PUM1_MOUSE1.498e-1448.65Pumilio homolog 1 OS=Mus musculus GN=Pum1 PE=1 SV=... [more]
PUM1_HUMAN1.498e-1448.65Pumilio homolog 1 OS=Homo sapiens GN=PUM1 PE=1 SV=... [more]
PUM_DROME8.220e-1349.32Maternal protein pumilio OS=Drosophila melanogaste... [more]
PUF3_SCHPO9.088e-1240.54mRNA-binding protein puf3 OS=Schizosaccharomyces p... [more]
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Properties
Property NameValue
Genbank descriptionC01005C08SK Veg1 Citrus clementina cDNA clone C01005C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287154 ID=CX287154; Name=CX287154; organism=Citrus clementina; type=EST; length=583bp
TTTTTTTTTTTTTTTTTACACCCTTAAAAACCTAAGTAGTCTTTCATTTC
ATTTTTTATCTCCTCCGCATGGGCATCAGGTGTACTCAACATCTGAACCC
CAGCTTGCACGACTCTACGTATAAACCGTAAACTACAGAATGTACACTTT
CCAAGTACAACCAACAACTTTATTTTTGATCCCCTCGTACCCATCTTAGA
AGAGATAGGTAGAGTCATTGCTCTAAATACCAGGAGAAAGAAAAGAGAAA
AAGAGGAAGCTCACACTAGCCTCAGTTAGCTGTACAGACAACTTTCTTTC
CTATGCCGCCTAAGCAGGGTGTGGAGACTGAGCAGCAATTCTGCGTTCCC
CAGCAGCAACAAGTTTCTCTACACGCGCAACAATATGCTTCCCATACGTG
TACTTCTTTAATGCATTCAAATGAACTTTAATTCGTGAAAGAATCAGCTC
GCGTTGTTGGTCCTCACAAGTCTCCAAAACTTTTTGTACAACGTAGTTTG
CAAACTGATCTTTCATCATTGCCTGAAGAGGCTCATTTTCATCTGTAGAG
CCAAGCATCTCGTCCACCAGTAACTGACGTTCA
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