CX287159

Overview
NameCX287159
Unique NameCX287159
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2912 contig Ccv1_Contig2912:14..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287159 vs. ExPASy Swiss-Prot
Match: RL6_MESCR (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 3.043e-71
Identity = 137/206 (66.50%), Postives = 152/206 (73.79%), Query Frame = 1
Query:   58 APKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLKRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIE 675
            A K      SRNP+L+RG+GK+SRSKMYHKRGLWAIKAKNGGVFPKH               FYPADDVKKPL+NKRK KPTKLRASITPGTV I+LAGRF GKRVVFLKQL+SGLLLVTGPFKVNGVPL+RVNQ+YVIATSTKVDISGV++ KFDD+YF                        VLP +KKDDQK VD  L+K+IE
Sbjct:    3 AAKQRKPHVSRNPELVRGIGKYSRSKMYHKRGLWAIKAKNGGVFPKHAPKSADSKAVEKPPKFYPADDVKKPLINKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKVNGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVNVLPQEKKDDQKAVDVALLKAIE 208          
BLAST of CX287159 vs. ExPASy Swiss-Prot
Match: RL61_ARATH (60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 3.364e-70
Identity = 133/201 (66.17%), Postives = 152/201 (75.62%), Query Frame = 1
Query:   73 TGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLKRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIE 675
            T + +RNPDLIRGVGK+SRS+MYHKRGLWAIKAKNGGVFP+HD              FYPA+DVKKPLVN+RK KPTKL+ASITPGTV I+LAGRF GKRVVFLKQL+SGLLLVTGPFK+NGVPL+RVNQ+YVI TSTK+DISGV+  KFDD+YF                         +P +KK+DQKTVDA LIKSIE
Sbjct:    7 TPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAKFYPAEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQEKKEDQKTVDAALIKSIE 207          
BLAST of CX287159 vs. ExPASy Swiss-Prot
Match: RL63_ARATH (60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=1 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 2.848e-69
Identity = 135/207 (65.22%), Postives = 149/207 (71.98%), Query Frame = 1
Query:   55 MAPKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLKRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIE 675
            M  K  T + +RNPDLIRGVGK+SRS+MYHKRGLWAIKAKNGGVFP+HD              FYPA+DVKKPL N+R  KPTKLRASITPGTV I+LAGRF GKRVVFLKQL SGLLLVTGPFK+NGVPL+RVNQ+YVI TSTKVDISGV L KFDD+YF                         +P  KKDDQK VDA LIK+IE
Sbjct:    1 MPAKQRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQVKKDDQKAVDAALIKAIE 207          
BLAST of CX287159 vs. ExPASy Swiss-Prot
Match: RL62_ARATH (60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 3.720e-69
Identity = 134/207 (64.73%), Postives = 148/207 (71.50%), Query Frame = 1
Query:   55 MAPKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLKRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIE 675
            M  K  T + +RNPDLIRGVGK+SRS+MYHKRGLWAIKAKNGGVFP+HD              FYPA+DVKKPL N+R  KP KLRASITPGTV I+LAGRF GKRVVFLKQL SGLLLVTGPFK+NGVPL+RVNQ+YVI TSTKVDISGV L KFDD+YF                         +P  KKDDQK VDA LIK+IE
Sbjct:    1 MPAKQRTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQGKKDDQKAVDAALIKAIE 207          
BLAST of CX287159 vs. ExPASy Swiss-Prot
Match: RL6_HUMAN (60S ribosomal protein L6 OS=Homo sapiens GN=RPL6 PE=1 SV=3)

HSP 1 Score: 134.42 bits (337), Expect = 5.251e-31
Identity = 91/248 (36.69%), Postives = 121/248 (48.79%), Query Frame = 1
Query:   28 RVAESGFNEMAPKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLKRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIE 675
            +V +       PK      SRNP L+RG+G++SRS MY ++ ++  K                           KNGG                    +YP +DV + L++  K KP      KLRASITPGT+ I+L GR  GKRVVFLKQL SGLLLVTGP  +N VPL+R +Q +VIATSTK+DIS V + K   D YF                        +  + +K DQK VD+Q++  I+
Sbjct:   26 KVKKGNLKAKKPKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEI-TEQRKIDQKAVDSQILPKIK 262          
BLAST of CX287159 vs. ExPASy Swiss-Prot
Match: RL6_PIG (60S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=2 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 8.957e-31
Identity = 88/229 (38.43%), Postives = 119/229 (51.97%), Query Frame = 1
Query:   85 SRNPDLIRGVGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLKRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIE 675
            SRNP L+RG+G++SRS MY ++ L+  K                           KNGG                    +YP +DV + L++  K KP      KLRASITPGT+ I+L GR  GKRV+FLKQL+SGLLLVTGP  +N VPL+R +Q +VIATSTK+DISGV + +   D YF                        +  + +K DQK VD+Q+++ I+
Sbjct:   41 SRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEI-SEQRKVDQKAVDSQILRRIK 258          
BLAST of CX287159 vs. ExPASy Swiss-Prot
Match: RL6_CHILA (60S ribosomal protein L6 OS=Chinchilla lanigera GN=RPL6 PE=2 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 8.957e-31
Identity = 94/243 (38.68%), Postives = 122/243 (50.21%), Query Frame = 1
Query:   49 NEMAPKAATGRT--SRNPDLIRGVGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLKRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIE 675
            N  A K+  G+   SRNP L+RG+G++SRS MY ++ L+  K                           KNGG                    +YP +DV + L++  K KP      KLRASITPGTV I+L GR  GKRVVFLKQL SGLLLVTGP  +N VPL+R +Q +VIATSTK+DIS V + K   D YF                        +  + +K DQK VD+Q++  I+
Sbjct:   31 NVKAKKSKKGQPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYTAAKSKVEKKKKEKVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTVLIILTGRHRGKRVVFLKQLASGLLLVTGPLNLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKERYQI-SEQRKVDQKAVDSQILPKIK 262          
BLAST of CX287159 vs. ExPASy Swiss-Prot
Match: RL6_MOUSE (60S ribosomal protein L6 OS=Mus musculus GN=Rpl6 PE=1 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 1.170e-30
Identity = 92/238 (38.66%), Postives = 118/238 (49.58%), Query Frame = 1
Query:   61 PKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKA---------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLKRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIE 675
            PK A    SRNP L+RG+G++SRS MY ++ L+  K                            KNGG                    +YP +DV + L++  K KP      +LR+SITPGTV I+L GR  GKRVVFLKQL SGLLLVTGP  +N VPL+R +Q +VIATSTKVDIS V + K   D YF                        +  + +K DQK VD Q++  I+
Sbjct:   44 PKKAKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYFKKKQLRKPRHQEGEIFDTEKEKYEI-TEQRKADQKAVDLQILPKIK 270          
BLAST of CX287159 vs. ExPASy Swiss-Prot
Match: RL6_BOVIN (60S ribosomal protein L6 OS=Bos taurus GN=RPL6 PE=2 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 1.528e-30
Identity = 89/229 (38.86%), Postives = 118/229 (51.53%), Query Frame = 1
Query:   85 SRNPDLIRGVGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLKRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIE 675
            SRNP L+RG+G++SRS MY ++ L+  K                           KNGG                    +YP +DV + L++  K KP      KLRASITPGT+ I+L GR  GKRVVFLKQL SGLLLVTGP  +N VPL+R +Q +VIATSTK+DISGV + +   D YF                        +  + +K DQK VD+Q+++ I+
Sbjct:   44 SRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVVFLKQLGSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDTYFKKKKLRKPRHQEGEIFDTEREKYEI-TEQRKVDQKAVDSQILRRIK 261          
BLAST of CX287159 vs. ExPASy Swiss-Prot
Match: RL6_RAT (60S ribosomal protein L6 OS=Rattus norvegicus GN=Rpl6 PE=1 SV=5)

HSP 1 Score: 128.642 bits (322), Expect = 2.881e-29
Identity = 89/230 (38.70%), Postives = 116/230 (50.43%), Query Frame = 1
Query:   85 SRNPDLIRGVGKFSRSKMYHKRGLWAIKA---------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLKRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIE 675
            SRNP L+RG+G++SRS MY ++ L+  K                            KNGG                    +YP +DV + L++  K KP      +LR+SITPGTV I+L GR  GKRVVFLKQL SGLLLVTGP  +N VPL+R +Q +VIATSTKVDIS V + K   D YF                        +  + +K DQK VD+Q++  I+
Sbjct:   54 SRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKKPLRKPRHQEGEIFDTEKEKYEI-TEQRKADQKAVDSQILPKIK 272          
The following BLAST results are available for this feature:
BLAST of CX287159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RL6_MESCR3.043e-7166.5060S ribosomal protein L6 OS=Mesembryanthemum cryst... [more]
RL61_ARATH3.364e-7066.1760S ribosomal protein L6-1 OS=Arabidopsis thaliana... [more]
RL63_ARATH2.848e-6965.2260S ribosomal protein L6-3 OS=Arabidopsis thaliana... [more]
RL62_ARATH3.720e-6964.7360S ribosomal protein L6-2 OS=Arabidopsis thaliana... [more]
RL6_HUMAN5.251e-3136.6960S ribosomal protein L6 OS=Homo sapiens GN=RPL6 P... [more]
RL6_PIG8.957e-3138.4360S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=... [more]
RL6_CHILA8.957e-3138.6860S ribosomal protein L6 OS=Chinchilla lanigera GN... [more]
RL6_MOUSE1.170e-3038.6660S ribosomal protein L6 OS=Mus musculus GN=Rpl6 P... [more]
RL6_BOVIN1.528e-3038.8660S ribosomal protein L6 OS=Bos taurus GN=RPL6 PE=... [more]
RL6_RAT2.881e-2938.7060S ribosomal protein L6 OS=Rattus norvegicus GN=R... [more]

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Properties
Property NameValue
Genbank descriptionC01005D01SK Veg1 Citrus clementina cDNA clone C01005D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287159 ID=CX287159; Name=CX287159; organism=Citrus clementina; type=EST; length=677bp
GCACGAGGAAACACTTTTCACCAACAGCGAGTAGCAGAGAGCGGCTTCAA
CGAAATGGCGCCGAAAGCTGCGACTGGAAGAACGAGCCGTAACCCGGACC
TCATACGCGGCGTTGGCAAGTTCTCCAGATCCAAAATGTACCACAAGCGC
GGCCTCTGGGCAATCAAGGCAAAAAACGGCGGCGTTTTCCCGAAACACGA
CCCAAAGCCTGCTGCCGCTGAGACGCCAGCCAAGCCTCCCAAGTTCTACC
CAGCTGATGATGTCAAGAAGCCGCTCGTCAACAAGCGAAAGCACAAACCC
ACCAAACTCAGAGCGAGTATTACACCTGGGACAGTGTTTATTCTATTGGC
TGGAAGGTTTATGGGGAAGAGAGTTGTTTTTCTGAAACAACTTACATCTG
GGCTGCTTCTTGTTACCGGGCCGTTCAAGGTCAACGGTGTTCCATTGAAA
CGGGTAAATCAATCTTATGTGATTGCTACCTCTACCAAGGTTGACATTTC
TGGAGTCGATCTAGGAAAGTTTGATGACCAATACTTTGAAAAGGAAGCCG
AGAAGAAGAAAAAGAAGGGGGAAGGAGAATTTTTTGAGGCAGAGAAGGAG
GAAAAGAAAGTGCTCCCAGATGATAAGAAAGATGATCAAAAGACTGTTGA
TGCGCAATTGATAAAATCCATTGAAGC
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