CX287159
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX287159 vs. ExPASy Swiss-Prot
Match: RL6_MESCR (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1) HSP 1 Score: 268.085 bits (684), Expect = 3.043e-71 Identity = 137/206 (66.50%), Postives = 152/206 (73.79%), Query Frame = 1 Query: 58 APKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLKRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIE 675 A K SRNP+L+RG+GK+SRSKMYHKRGLWAIKAKNGGVFPKH FYPADDVKKPL+NKRK KPTKLRASITPGTV I+LAGRF GKRVVFLKQL+SGLLLVTGPFKVNGVPL+RVNQ+YVIATSTKVDISGV++ KFDD+YF VLP +KKDDQK VD L+K+IE Sbjct: 3 AAKQRKPHVSRNPELVRGIGKYSRSKMYHKRGLWAIKAKNGGVFPKHAPKSADSKAVEKPPKFYPADDVKKPLINKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKVNGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVNVLPQEKKDDQKAVDVALLKAIE 208
BLAST of CX287159 vs. ExPASy Swiss-Prot
Match: RL61_ARATH (60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1) HSP 1 Score: 264.618 bits (675), Expect = 3.364e-70 Identity = 133/201 (66.17%), Postives = 152/201 (75.62%), Query Frame = 1 Query: 73 TGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLKRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIE 675 T + +RNPDLIRGVGK+SRS+MYHKRGLWAIKAKNGGVFP+HD FYPA+DVKKPLVN+RK KPTKL+ASITPGTV I+LAGRF GKRVVFLKQL+SGLLLVTGPFK+NGVPL+RVNQ+YVI TSTK+DISGV+ KFDD+YF +P +KK+DQKTVDA LIKSIE Sbjct: 7 TPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAKFYPAEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQEKKEDQKTVDAALIKSIE 207
BLAST of CX287159 vs. ExPASy Swiss-Prot
Match: RL63_ARATH (60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=1 SV=1) HSP 1 Score: 261.536 bits (667), Expect = 2.848e-69 Identity = 135/207 (65.22%), Postives = 149/207 (71.98%), Query Frame = 1 Query: 55 MAPKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLKRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIE 675 M K T + +RNPDLIRGVGK+SRS+MYHKRGLWAIKAKNGGVFP+HD FYPA+DVKKPL N+R KPTKLRASITPGTV I+LAGRF GKRVVFLKQL SGLLLVTGPFK+NGVPL+RVNQ+YVI TSTKVDISGV L KFDD+YF +P KKDDQK VDA LIK+IE Sbjct: 1 MPAKQRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQVKKDDQKAVDAALIKAIE 207
BLAST of CX287159 vs. ExPASy Swiss-Prot
Match: RL62_ARATH (60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1) HSP 1 Score: 261.151 bits (666), Expect = 3.720e-69 Identity = 134/207 (64.73%), Postives = 148/207 (71.50%), Query Frame = 1 Query: 55 MAPKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLKRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIE 675 M K T + +RNPDLIRGVGK+SRS+MYHKRGLWAIKAKNGGVFP+HD FYPA+DVKKPL N+R KP KLRASITPGTV I+LAGRF GKRVVFLKQL SGLLLVTGPFK+NGVPL+RVNQ+YVI TSTKVDISGV L KFDD+YF +P KKDDQK VDA LIK+IE Sbjct: 1 MPAKQRTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQGKKDDQKAVDAALIKAIE 207
BLAST of CX287159 vs. ExPASy Swiss-Prot
Match: RL6_HUMAN (60S ribosomal protein L6 OS=Homo sapiens GN=RPL6 PE=1 SV=3) HSP 1 Score: 134.42 bits (337), Expect = 5.251e-31 Identity = 91/248 (36.69%), Postives = 121/248 (48.79%), Query Frame = 1 Query: 28 RVAESGFNEMAPKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLKRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIE 675 +V + PK SRNP L+RG+G++SRS MY ++ ++ K KNGG +YP +DV + L++ K KP KLRASITPGT+ I+L GR GKRVVFLKQL SGLLLVTGP +N VPL+R +Q +VIATSTK+DIS V + K D YF + + +K DQK VD+Q++ I+ Sbjct: 26 KVKKGNLKAKKPKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEI-TEQRKIDQKAVDSQILPKIK 262
BLAST of CX287159 vs. ExPASy Swiss-Prot
Match: RL6_PIG (60S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=2 SV=3) HSP 1 Score: 133.65 bits (335), Expect = 8.957e-31 Identity = 88/229 (38.43%), Postives = 119/229 (51.97%), Query Frame = 1 Query: 85 SRNPDLIRGVGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLKRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIE 675 SRNP L+RG+G++SRS MY ++ L+ K KNGG +YP +DV + L++ K KP KLRASITPGT+ I+L GR GKRV+FLKQL+SGLLLVTGP +N VPL+R +Q +VIATSTK+DISGV + + D YF + + +K DQK VD+Q+++ I+ Sbjct: 41 SRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEI-SEQRKVDQKAVDSQILRRIK 258
BLAST of CX287159 vs. ExPASy Swiss-Prot
Match: RL6_CHILA (60S ribosomal protein L6 OS=Chinchilla lanigera GN=RPL6 PE=2 SV=3) HSP 1 Score: 133.65 bits (335), Expect = 8.957e-31 Identity = 94/243 (38.68%), Postives = 122/243 (50.21%), Query Frame = 1 Query: 49 NEMAPKAATGRT--SRNPDLIRGVGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLKRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIE 675 N A K+ G+ SRNP L+RG+G++SRS MY ++ L+ K KNGG +YP +DV + L++ K KP KLRASITPGTV I+L GR GKRVVFLKQL SGLLLVTGP +N VPL+R +Q +VIATSTK+DIS V + K D YF + + +K DQK VD+Q++ I+ Sbjct: 31 NVKAKKSKKGQPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYTAAKSKVEKKKKEKVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTVLIILTGRHRGKRVVFLKQLASGLLLVTGPLNLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKERYQI-SEQRKVDQKAVDSQILPKIK 262
BLAST of CX287159 vs. ExPASy Swiss-Prot
Match: RL6_MOUSE (60S ribosomal protein L6 OS=Mus musculus GN=Rpl6 PE=1 SV=3) HSP 1 Score: 133.265 bits (334), Expect = 1.170e-30 Identity = 92/238 (38.66%), Postives = 118/238 (49.58%), Query Frame = 1 Query: 61 PKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKA---------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLKRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIE 675 PK A SRNP L+RG+G++SRS MY ++ L+ K KNGG +YP +DV + L++ K KP +LR+SITPGTV I+L GR GKRVVFLKQL SGLLLVTGP +N VPL+R +Q +VIATSTKVDIS V + K D YF + + +K DQK VD Q++ I+ Sbjct: 44 PKKAKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYFKKKQLRKPRHQEGEIFDTEKEKYEI-TEQRKADQKAVDLQILPKIK 270
BLAST of CX287159 vs. ExPASy Swiss-Prot
Match: RL6_BOVIN (60S ribosomal protein L6 OS=Bos taurus GN=RPL6 PE=2 SV=3) HSP 1 Score: 132.88 bits (333), Expect = 1.528e-30 Identity = 89/229 (38.86%), Postives = 118/229 (51.53%), Query Frame = 1 Query: 85 SRNPDLIRGVGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLKRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIE 675 SRNP L+RG+G++SRS MY ++ L+ K KNGG +YP +DV + L++ K KP KLRASITPGT+ I+L GR GKRVVFLKQL SGLLLVTGP +N VPL+R +Q +VIATSTK+DISGV + + D YF + + +K DQK VD+Q+++ I+ Sbjct: 44 SRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVVFLKQLGSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDTYFKKKKLRKPRHQEGEIFDTEREKYEI-TEQRKVDQKAVDSQILRRIK 261
BLAST of CX287159 vs. ExPASy Swiss-Prot
Match: RL6_RAT (60S ribosomal protein L6 OS=Rattus norvegicus GN=Rpl6 PE=1 SV=5) HSP 1 Score: 128.642 bits (322), Expect = 2.881e-29 Identity = 89/230 (38.70%), Postives = 116/230 (50.43%), Query Frame = 1 Query: 85 SRNPDLIRGVGKFSRSKMYHKRGLWAIKA---------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLKRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIE 675 SRNP L+RG+G++SRS MY ++ L+ K KNGG +YP +DV + L++ K KP +LR+SITPGTV I+L GR GKRVVFLKQL SGLLLVTGP +N VPL+R +Q +VIATSTKVDIS V + K D YF + + +K DQK VD+Q++ I+ Sbjct: 54 SRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKKPLRKPRHQEGEIFDTEKEKYEI-TEQRKADQKAVDSQILPKIK 272 The following BLAST results are available for this feature:
BLAST of CX287159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX287159 ID=CX287159; Name=CX287159; organism=Citrus clementina; type=EST; length=677bpback to top |