CX287160

Overview
NameCX287160
Unique NameCX287160
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12957 contig Ccv1_Contig12957:14..683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287160 vs. ExPASy Swiss-Prot
Match: HSP97_STRFN (97 kDa heat shock protein OS=Strongylocentrotus franciscanus GN=HSP110 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.705e-50
Identity = 103/187 (55.08%), Postives = 130/187 (69.52%), Query Frame = 2
Query:  110 MSVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHDTTATALAYGIYKTD 670
            MSVVGFD+GN S  +AVAR  GI+ + N+ S R TPS+V FG+K R  G A  + +  N KN++SQ KR I RQFSDP +Q+D   +P+ VT+ P+G   +  +YLGET  FTP Q+  M+L+ LKA AE NL   VVDC I +P Y+TDL+RR VI AA IAGL+ LR+  DTTA ALAYGIYK D
Sbjct:    1 MSVVGFDVGNLSSYIAVARGGGIETMANEYSDRLTPSVVSFGEKSRTQGHAARSQAITNYKNTLSQFKRFIARQFSDPSVQKDAHVVPYKVTQLPNGNVGMQVQYLGETETFTPEQIYAMILTKLKATAEVNLCRKVVDCVISVPQYYTDLERRGVIHAAEIAGLNCLRVISDTTAVALAYGIYKQD 187          
BLAST of CX287160 vs. ExPASy Swiss-Prot
Match: HSP97_STRPU (97 kDa heat shock protein OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 2.908e-50
Identity = 101/187 (54.01%), Postives = 131/187 (70.05%), Query Frame = 2
Query:  110 MSVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHDTTATALAYGIYKTD 670
            MSVVGFD+GN S  +AVAR  GI+ + N+ S R TPS+V FG+K R  G A  + +  N KN++SQ KR I R+FSDP +Q+D K +P+ +T+ P+G   +  +YLGET  FTP Q+  M+L+ LK+ AE NL   VVDC I +P Y+TDL+RR VI AA IAGL+ LR+  DTTA ALAYGIYK D
Sbjct:    1 MSVVGFDVGNLSSYIAVARGGGIETMANEYSDRLTPSVVSFGEKSRTQGHAARSQAITNYKNTLSQFKRFIARRFSDPSVQKDAKVVPYKITQLPNGNVGMQVQYLGETETFTPEQIYAMILTKLKSTAEINLCRKVVDCVISVPQYYTDLERRGVIHAAEIAGLNCLRVISDTTAVALAYGIYKQD 187          
BLAST of CX287160 vs. ExPASy Swiss-Prot
Match: YLA4_CAEEL (Uncharacterized protein C30C11.4 OS=Caenorhabditis elegans GN=C30C11.4 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.068e-44
Identity = 94/189 (49.74%), Postives = 122/189 (64.55%), Query Frame = 2
Query:  110 MSVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLN--AAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHDTTATALAYGIYKTD 670
            MSV+GFD+GN +C + VARQ GI+V+ ND S   TP+ V FG K R +G A   + T N KN++   K LIGR+FSDP  QR +  +P  V + P+    +   YLGE   FTP QVL  LL+ L+ I ES L+    V DC + +P YFTD+QRRAV+ A   AGL+ LR+ ++TTA ALAYGIYK D
Sbjct:    1 MSVLGFDIGNLNCYIGVARQGGIEVITNDYSLHATPACVSFGPKDRSMGVAARQAVTTNIKNTVINFKHLIGRKFSDPVAQRFIPFIPCKVVKLPNDDIGVQVSYLGEPHTFTPEQVLAALLTKLRTIVESQLSDVKKVSDCVLAVPSYFTDVQRRAVLSAIQYAGLNSLRIVNETTAIALAYGIYKQD 189          
BLAST of CX287160 vs. ExPASy Swiss-Prot
Match: HSP74_CANFA (Heat shock 70 kDa protein 4 OS=Canis familiaris GN=HSPA4 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.019e-43
Identity = 92/187 (49.20%), Postives = 120/187 (64.17%), Query Frame = 2
Query:  110 MSVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHDTTATALAYGIYKTD 670
            MSVVG DLG +SC VAVAR  GI+ + N+ S R TP+ + FG K R IG A  +    N KN++   KR  GR FSDP ++ +  +L + + + P G   I  +Y+ E R FT  QV  MLLS LK  AES L   VVDC + +P ++TD +RR+V+DA  IAGL+ LRL ++TTA ALAYGIYK D
Sbjct:    1 MSVVGIDLGFQSCYVAVARAGGIETIANEYSDRCTPACISFGPKNRSIGAAAKSQVISNAKNTVQGFKRFHGRAFSDPFVEAEKSNLAYDIVQLPTGLTGIKVKYMEEERNFTTEQVTAMLLSKLKETAESVLKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETTAVALAYGIYKQD 187          
BLAST of CX287160 vs. ExPASy Swiss-Prot
Match: HSP74_PONAB (Heat shock 70 kDa protein 4 OS=Pongo abelii GN=HSPA4 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.443e-43
Identity = 93/187 (49.73%), Postives = 119/187 (63.64%), Query Frame = 2
Query:  110 MSVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHDTTATALAYGIYKTD 670
            MSVVG DLG +SC VAVAR  GI+ + N+ S R TP+ + FG K R IG A  +    N KN++   KR  GR FSDP ++ +  +L + V + P G   I   Y+ E R FT  QV  MLLS LK  AES L   VVDC + +P ++TD +RR+V+DA  IAGL+ LRL ++TTA ALAYGIYK D
Sbjct:    1 MSVVGIDLGFQSCYVAVARAGGIETIANEYSDRCTPACISFGPKNRSIGAAAKSQVISNAKNTVQGFKRFHGRAFSDPFVEAEKSNLAYDVVQLPTGLTGIKVTYMEEERNFTTEQVTAMLLSKLKETAESVLKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETTAVALAYGIYKQD 187          
BLAST of CX287160 vs. ExPASy Swiss-Prot
Match: HSP74_MOUSE (Heat shock 70 kDa protein 4 OS=Mus musculus GN=Hspa4 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.497e-43
Identity = 93/187 (49.73%), Postives = 119/187 (63.64%), Query Frame = 2
Query:  110 MSVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHDTTATALAYGIYKTD 670
            MSVVG DLG +SC VAVAR  GI+ + N+ S R TP+ V FG K R IG A  +    N KN++   KR  GR FSDP ++ +  +L + + + P G   I   Y+ E R FT  QV  MLLS LK  AES L   VVDC + +P ++TD +RR+V+DA  IAGL+ LRL ++TTA ALAYGIYK D
Sbjct:    1 MSVVGIDLGFQSCYVAVARAGGIETIANEYSDRCTPACVSFGPKNRSIGAAAKSQVISNAKNTVQGFKRFHGRAFSDPFVEAEKSNLAYDIVQLPTGLTGIKVTYMEEERNFTTEQVTAMLLSKLKETAESVLKKPVVDCVVSVPSFYTDAERRSVMDATQIAGLNCLRLMNETTAVALAYGIYKQD 187          
BLAST of CX287160 vs. ExPASy Swiss-Prot
Match: HSP74_HUMAN (Heat shock 70 kDa protein 4 OS=Homo sapiens GN=HSPA4 PE=1 SV=4)

HSP 1 Score: 174.481 bits (441), Expect = 4.497e-43
Identity = 92/187 (49.20%), Postives = 119/187 (63.64%), Query Frame = 2
Query:  110 MSVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHDTTATALAYGIYKTD 670
            MSVVG DLG +SC VAVAR  GI+ + N+ S R TP+ + FG K R IG A  +    N KN++   KR  GR FSDP ++ +  +L + + + P G   I   Y+ E R FT  QV  MLLS LK  AES L   VVDC + +P ++TD +RR+V+DA  IAGL+ LRL ++TTA ALAYGIYK D
Sbjct:    1 MSVVGIDLGFQSCYVAVARAGGIETIANEYSDRCTPACISFGPKNRSIGAAAKSQVISNAKNTVQGFKRFHGRAFSDPFVEAEKSNLAYDIVQLPTGLTGIKVTYMEEERNFTTEQVTAMLLSKLKETAESVLKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETTAVALAYGIYKQD 187          
BLAST of CX287160 vs. ExPASy Swiss-Prot
Match: HSP74_RAT (Heat shock 70 kDa protein 4 OS=Rattus norvegicus GN=Hspa4 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.874e-43
Identity = 92/187 (49.20%), Postives = 119/187 (63.64%), Query Frame = 2
Query:  110 MSVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHDTTATALAYGIYKTD 670
            MSVVG DLG +SC VAVAR  GI+ + N+ S R TP+ V FG K R +G A  +    N KN++   KR  GR FSDP ++ +  +L + + + P G   I   Y+ E R FT  QV  MLLS LK  AES L   VVDC + +P ++TD +RR+V+DA  IAGL+ LRL ++TTA ALAYGIYK D
Sbjct:    1 MSVVGIDLGFQSCYVAVARAGGIETIANEYSDRCTPACVSFGPKNRSVGAAAKSQVISNAKNTVQGFKRFHGRAFSDPFVEAEKSNLAYDIVQLPTGLTGIKVTYMEEERNFTTEQVTAMLLSKLKETAESVLKKPVVDCVVSVPSFYTDAERRSVMDATQIAGLNCLRLMNETTAVALAYGIYKQD 187          
BLAST of CX287160 vs. ExPASy Swiss-Prot
Match: HS105_CRIGR (Heat shock protein 105 kDa OS=Cricetulus griseus GN=HSPH1 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.108e-41
Identity = 87/187 (46.52%), Postives = 119/187 (63.64%), Query Frame = 2
Query:  110 MSVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHDTTATALAYGIYKTD 670
            MSVVG D+G++SC +AVAR  GI+ + N+ S R TPS++ FG K R IG A       +  N++S  KR  GR FSDP +Q++ +SL + +    +G   I   Y+ E  +F+  Q+  MLL+ LK  AE+NL   V DC I +P +FTD +RR+V+DAA I GL+ LRL +D TA AL YGIYK D
Sbjct:    1 MSVVGLDVGSQSCYIAVARAGGIETIANEFSDRCTPSVISFGPKNRTIGVAAKNQQITHANNTVSSFKRFHGRAFSDPFIQKEKESLSYDLVPMKNGGVGIKVMYMDEEHLFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNCLRLMNDMTAVALNYGIYKQD 187          
BLAST of CX287160 vs. ExPASy Swiss-Prot
Match: HS105_BOVIN (Heat shock protein 105 kDa OS=Bos taurus GN=HSPH1 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.889e-41
Identity = 85/187 (45.45%), Postives = 120/187 (64.17%), Query Frame = 2
Query:  110 MSVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHDTTATALAYGIYKTD 670
            MSVVG D+G++SC +AVAR  GI+ + N+ S R TPS++ FG K R IG A  +    +  N++S  KR  GR F+DP +Q++ ++L + +    +G   I   Y+ E  +F+  Q+  MLL+ LK  AE+NL   V DC I +P +FTD +RR+V+DAA I GL+ LRL +D TA AL YGIYK D
Sbjct:    1 MSVVGLDVGSQSCYIAVARAGGIETIANEFSDRCTPSVISFGSKNRTIGVAAKSQQITHANNTVSNFKRFHGRAFNDPFIQKEKENLSYDLVPMKNGGVGIKVMYMDEEHLFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNCLRLMNDMTAVALNYGIYKQD 187          
The following BLAST results are available for this feature:
BLAST of CX287160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP97_STRFN1.705e-5055.0897 kDa heat shock protein OS=Strongylocentrotus fr... [more]
HSP97_STRPU2.908e-5054.0197 kDa heat shock protein OS=Strongylocentrotus pu... [more]
YLA4_CAEEL4.068e-4449.74Uncharacterized protein C30C11.4 OS=Caenorhabditis... [more]
HSP74_CANFA2.019e-4349.20Heat shock 70 kDa protein 4 OS=Canis familiaris GN... [more]
HSP74_PONAB3.443e-4349.73Heat shock 70 kDa protein 4 OS=Pongo abelii GN=HSP... [more]
HSP74_MOUSE4.497e-4349.73Heat shock 70 kDa protein 4 OS=Mus musculus GN=Hsp... [more]
HSP74_HUMAN4.497e-4349.20Heat shock 70 kDa protein 4 OS=Homo sapiens GN=HSP... [more]
HSP74_RAT5.874e-4349.20Heat shock 70 kDa protein 4 OS=Rattus norvegicus G... [more]
HS105_CRIGR1.108e-4146.52Heat shock protein 105 kDa OS=Cricetulus griseus G... [more]
HS105_BOVIN1.889e-4145.45Heat shock protein 105 kDa OS=Bos taurus GN=HSPH1 ... [more]

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Properties
Property NameValue
Genbank descriptionC01005D02SK Veg1 Citrus clementina cDNA clone C01005D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287160 ID=CX287160; Name=CX287160; organism=Citrus clementina; type=EST; length=670bp
CGAAAGCAAAAATACTCAGCAGAAATTTCCAGAACACATTAAATCCCCTC
CATTTAAGTCGCTGGAGCCGACCAATTTAATTTAATAAATTGGGTAATTA
TTGGCAAAGATGAGCGTGGTTGGTTTTGATTTGGGCAATGAGAGCTGCAT
TGTCGCTGTCGCCAGGCAAAGGGGCATTGACGTTGTGCTTAATGATGAAT
CTAAGCGCGAGACTCCTTCAATTGTCTGTTTTGGTGACAAGCAGCGGTTC
ATTGGCACCGCTGGGGCTGCATCATCTACAATGAACCCCAAAAACTCAAT
CTCACAGATAAAACGGCTGATTGGGCGACAATTCTCTGATCCTGAGCTGC
AAAGGGATCTTAAGTCACTGCCTTTTGCTGTAACTGAAGGTCCTGATGGT
TACCCTTTAATACATGCACGATATTTGGGTGAAACAAGAGTGTTTACTCC
AACCCAAGTTTTGGGTATGTTGCTCTCAAATTTAAAAGCCATAGCTGAGA
GTAATTTGAATGCAGCAGTTGTGGACTGCTGCATTGGAATTCCTGTTTAT
TTCACTGATCTCCAAAGAAGAGCTGTTATAGATGCAGCCACAATTGCAGG
ATTGCATCCGCTTCGTTTATTTCATGACACTACAGCCACAGCATTGGCTT
ATGGTATTTATAAGACAGAT
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