CX287163

Overview
NameCX287163
Unique NameCX287163
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length641
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287163_ssr462 microsatellite CX287163_ssr462:462..471. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig920 contig Ccv1_Contig920:161..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287163 vs. ExPASy Swiss-Prot
Match: ATPO_IPOBA (ATP synthase subunit O, mitochondrial OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 2.762e-63
Identity = 129/218 (59.17%), Postives = 156/218 (71.56%), Query Frame = 1
Query:    1 RSNSQLSPPHPQLS-----KGFSTSSVQKEQKVKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREP 639
            RSN+  S   P LS     + ++T+S  KEQK+KVPL ++G SGNYASALY+AAVK+N LEKVESE+ DLVEASKK+ T+ QF +D SVP +TRV AI EIC QAKF D T++FL++LAENGRL+++D I KRF ELTMAH+GEVK TVT+VI                              DP+ILGGLVVEFGQKVFDMSI++RARQMERFLREP
Sbjct:   24 RSNAHRSILCPTLSNSELLRNYATASASKEQKIKVPLTMYGVSGNYASALYLAAVKSNTLEKVESELYDLVEASKKSPTFSQFMRDPSVPVDTRVNAIKEICAQAKFGDTTQNFLLILAENGRLKHIDRIVKRFKELTMAHRGEVKATVTTVIPLPADEEKELKATLQEMVGQGKSVQIEQKIDPTILGGLVVEFGQKVFDMSIRTRARQMERFLREP 241          
BLAST of CX287163 vs. ExPASy Swiss-Prot
Match: ATPO_ARATH (ATP synthase subunit O, mitochondrial OS=Arabidopsis thaliana GN=At5g13450 PE=1 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 1.738e-49
Identity = 102/197 (51.78%), Postives = 135/197 (68.53%), Query Frame = 1
Query:   49 FSTSSVQKEQKVKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREP 639
            ++T+S Q    VKVP+AL G +GN+AS LYIAAVK N+LEK+E+++ +++EA K A  + QFTKD SVP  TR+ AI + C QAKF++ TK+FL +LAENG+L+NLD I K+F++LT AH+G+VKV VT+VI                              DPSI GGL+VEF QKV DMSI++RA+QMER LREP
Sbjct:   36 YATASAQTTANVKVPIALVGENGNFASWLYIAAVKMNSLEKIETDLSEMIEAMKTAPIFAQFTKDPSVPRGTRLAAIRDACDQAKFAEPTKNFLSLLAENGKLKNLDAIVKKFMQLTNAHRGDVKVLVTTVIPLPPAEEKELTETLQEIIGAGKKITVEQKIDPSIYGGLIVEFQQKVLDMSIRTRAQQMERLLREP 232          
BLAST of CX287163 vs. ExPASy Swiss-Prot
Match: ATPO_PONAB (ATP synthase subunit O, mitochondrial OS=Pongo abelii GN=ATP5O PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.134e-24
Identity = 69/197 (35.03%), Postives = 103/197 (52.28%), Query Frame = 1
Query:   49 FSTSSVQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 636
            FSTS V+   K V+ P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+            V    +VK++N+I  + +FS +T + + +LAENGRL N   +   F  +  AH+GEV  TVTS                                DPSILGG++V  G+K  DMS+K++ +++ R +RE
Sbjct:   16 FSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPKVAAPVLNPY-VKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSAHRGEVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPSILGGMIVRIGEKYVDMSVKTKIQKLSRAMRE 211          
BLAST of CX287163 vs. ExPASy Swiss-Prot
Match: ATPO_HUMAN (ATP synthase subunit O, mitochondrial OS=Homo sapiens GN=ATP5O PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.311e-24
Identity = 68/197 (34.52%), Postives = 102/197 (51.78%), Query Frame = 1
Query:   49 FSTSSVQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 636
            FSTS V+   K V+ P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+            V    +VK++N+I  + +FS +T + + +LAENGRL N   +   F  +   H+GEV  TVTS                                DPSILGG++V  G+K  DMS+K++ +++ R +RE
Sbjct:   16 FSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPKVAASVLNPY-VKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPSILGGMIVRIGEKYVDMSVKTKIQKLGRAMRE 211          
BLAST of CX287163 vs. ExPASy Swiss-Prot
Match: ATPO_RHIFE (ATP synthase subunit O, mitochondrial OS=Rhinolophus ferrumequinum GN=ATP5O PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.139e-23
Identity = 64/197 (32.49%), Postives = 102/197 (51.78%), Query Frame = 1
Query:   49 FSTSSVQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 636
            FSTS V+   K V+ P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+            +    +VK++N++ T+ KFS +T + + +LAENGRL N   +   F  +   H+GEV  +VT+                                DPSI+GG+++  G+K  DMS K++ +++ R +RE
Sbjct:   16 FSTSVVRPFTKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVAQLLKEPKMAASIMNPY-IKRSIKVKSLNDMTTKEKFSPLTSNLMNLLAENGRLNNTPGVISAFSTIMSVHRGEVPCSVTTASPLDEATLSELKTVLQSFLSKNQILKLEVKTDPSIMGGMIIRIGEKYVDMSAKTKIQKLSRVMRE 211          
BLAST of CX287163 vs. ExPASy Swiss-Prot
Match: ATPO_BOVIN (ATP synthase subunit O, mitochondrial OS=Bos taurus GN=ATP5O PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.062e-22
Identity = 65/197 (32.99%), Postives = 101/197 (51.27%), Query Frame = 1
Query:   49 FSTSSVQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 636
            FSTS V+   K V+ P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+            V    +VK+++++  + KFS +T + + +LAENGRL N   +   F  +   H+GEV  TVT+                                DPSI+GG++V  G+K  DMS K++ +++ R +RE
Sbjct:   16 FSTSVVRPFAKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVGQILKEPKMAASLLNPY-VKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTMMSVHRGEVPCTVTTASALDEATLTELKTVLKSFLSKGQVLKLEVKIDPSIMGGMIVRIGEKYVDMSAKTKIQKLSRAMRE 211          
BLAST of CX287163 vs. ExPASy Swiss-Prot
Match: ATPO_MOUSE (ATP synthase subunit O, mitochondrial OS=Mus musculus GN=Atp5o PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.270e-22
Identity = 65/199 (32.66%), Postives = 100/199 (50.25%), Query Frame = 1
Query:   43 KGFSTSSVQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 636
            + FSTS V+   K V+ P+ ++G  G YA+ALY AA K   L++VE E+L + +  K             +    +VK++N+I  + KFS +T + + +LAENGRL N   I   F  +   H+GEV  TVT+                                DPSI+GG++V  G+K  DMS KS+ +++ + +RE
Sbjct:   14 RSFSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKEKKLDQVEKELLRVGQLLKDPKVSLAVLNPY-IKRTVKVKSLNDITKREKFSPLTANLMNLLAENGRLGNTQGIISAFSTIMSVHRGEVPCTVTTASPLDDAVLSELKTVLKSFLSPNQILKLEIKTDPSIMGGMIVRIGEKYVDMSAKSKIQKLSKAMRE 211          
BLAST of CX287163 vs. ExPASy Swiss-Prot
Match: ATPO_RAT (ATP synthase subunit O, mitochondrial OS=Rattus norvegicus GN=Atp5o PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.883e-22
Identity = 63/199 (31.66%), Postives = 100/199 (50.25%), Query Frame = 1
Query:   43 KGFSTSSVQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 636
            + FSTS V+   K V+ P+ ++G  G YA+ALY AA K   L++VE E+L + +  K             +    +VK++ +I T+ KFS +T + + +LAENGRL N   +   F  +   H+GEV  TVT+                                DPSI+GG++V  G+K  DMS KS+ +++ + +R+
Sbjct:   14 RSFSTSVVRPFSKLVRPPVQVYGIEGRYATALYSAASKQKRLDQVEKELLRVGQLLKDPKVSLAVLNPY-IKRSIKVKSLKDITTKEKFSPLTANLMNLLAENGRLGNTQGVISAFSTIMSVHRGEVPCTVTTAFPLDEAVLSELKTVLNSFLSKGQILNLEVKTDPSIMGGMIVRIGEKYVDMSAKSKIQKLSKAMRD 211          
BLAST of CX287163 vs. ExPASy Swiss-Prot
Match: ATPO_PIG (ATP synthase subunit O, mitochondrial OS=Sus scrofa GN=ATP5O PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.883e-22
Identity = 63/197 (31.98%), Postives = 101/197 (51.27%), Query Frame = 1
Query:   49 FSTSSVQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 636
            FSTS V+   K V+ P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+            V    +VK+++++  + KFS +T + + +LAENGRL +   +   F  +   H+GEV  +VT+                                DPSI+GG++V  G+K  DMS K++ +++ R +RE
Sbjct:   16 FSTSVVRPFAKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPKVAASIMNPY-VKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLSSTPGVISAFSTMMSVHRGEVPCSVTTASPLDEATLTELKTVLKSFLSKGQILKLEVKVDPSIMGGMIVRIGEKYVDMSAKTKIQKLSRAMRE 211          
BLAST of CX287163 vs. ExPASy Swiss-Prot
Match: ATPO_CALMO (ATP synthase subunit O, mitochondrial OS=Callicebus moloch GN=ATP5O PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.533e-21
Identity = 62/197 (31.47%), Postives = 100/197 (50.76%), Query Frame = 1
Query:   49 FSTSSVQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 636
            FSTS V+   K V+ P+ ++G  G YA+ALY AA K   LE+VE E+L + +  K+            V    +VK++++I  + +FS +T + + +LAENGRL N   +   F  +   H+GE+  TVT+                                DPSI+GG++V  G+K  DMS K++ +++ + +RE
Sbjct:   16 FSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKQKKLEQVEKELLRVAQILKEPKVAASVLNPY-VKHSVKVKSLSDIIAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEIPCTVTTASPLEETTLSELKTVLKSFLSQGQILKLEVKTDPSIMGGMIVRIGEKYVDMSAKTKIQKLSKAMRE 211          
The following BLAST results are available for this feature:
BLAST of CX287163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
ATPO_IPOBA2.762e-6359.17ATP synthase subunit O, mitochondrial OS=Ipomoea b... [more]
ATPO_ARATH1.738e-4951.78ATP synthase subunit O, mitochondrial OS=Arabidops... [more]
ATPO_PONAB1.134e-2435.03ATP synthase subunit O, mitochondrial OS=Pongo abe... [more]
ATPO_HUMAN4.311e-2434.52ATP synthase subunit O, mitochondrial OS=Homo sapi... [more]
ATPO_RHIFE2.139e-2332.49ATP synthase subunit O, mitochondrial OS=Rhinoloph... [more]
ATPO_BOVIN1.062e-2232.99ATP synthase subunit O, mitochondrial OS=Bos tauru... [more]
ATPO_MOUSE5.270e-2232.66ATP synthase subunit O, mitochondrial OS=Mus muscu... [more]
ATPO_RAT6.883e-2231.66ATP synthase subunit O, mitochondrial OS=Rattus no... [more]
ATPO_PIG6.883e-2231.98ATP synthase subunit O, mitochondrial OS=Sus scrof... [more]
ATPO_CALMO1.533e-2131.47ATP synthase subunit O, mitochondrial OS=Callicebu... [more]

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Properties
Property NameValue
Genbank descriptionC01005D05SK Veg1 Citrus clementina cDNA clone C01005D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287163 ID=CX287163; Name=CX287163; organism=Citrus clementina; type=EST; length=641bp
AGATCCAATTCTCAGCTATCCCCTCCTCATCCACAGTTATCGAAAGGTTT
TTCCACTTCGTCGGTGCAGAAGGAGCAGAAAGTTAAGGTGCCTCTGGCTT
TGTTTGGAGGTTCAGGAAATTATGCCTCTGCTCTGTACATTGCCGCAGTG
AAAACTAACGCACTGGAGAAGGTTGAGTCTGAGATTCTTGACCTTGTCGA
GGCTTCAAAGAAGGCTGATACATATTTTCAGTTCACAAAGGACTTGTCTG
TGCCTGCAGAGACAAGAGTTAAGGCCATTAACGAAATCTGTACTCAGGCT
AAATTTTCAGATGTTACGAAGCACTTCTTAGTTGTTTTGGCTGAGAATGG
GAGGCTTAGAAACTTAGACACCATCGCTAAGAGGTTTGTGGAGTTAACCA
TGGCACACAAGGGCGAAGTAAAAGTTACTGTTACATCCGTTATTCCACTT
CCCCCAGAAGAAGAGAGAGAGTTGAAAGAGACACTGCAAGAGACACTTGG
CCAAGGGAAGAAAGTCAAGGTTGAACAGAAGGTTGATCCTAGCATTCTTG
GTGGGCTCGTAGTAGAGTTTGGGCAAAAGGTGTTTGACATGTCCATTAAG
TCTAGGGCGCGGCAGATGGAGAGGTTCCTACGTGAGCCCAT
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