CX287173

Overview
NameCX287173
Unique NameCX287173
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length601
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287173 vs. ExPASy Swiss-Prot
Match: RUBB_ARATH (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Arabidopsis thaliana GN=At1g55490 PE=1 SV=3)

HSP 1 Score: 268.855 bits (686), Expect = 1.413e-71
Identity = 134/182 (73.63%), Postives = 159/182 (87.36%), Query Frame = 3
Query:    3 QKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVLSNDDPRYGYNAARNRYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDAVVVNIKESEPVPRRKLMPSS 548
            +K  LNERIA+LSGG+A++QVGAQT  ELK+K+LR+EDALNATKAA+EEGIVVGGGC+LLRL++KV+ IK  LDN+E+K+GA+I KRALSYP KLIAKNAGVNG+ V ++VLSND+ ++GYNAA  +YEDLMAAGIIDPTKVVRCCLEHAASVAKTFL SD VVV IKE EPVP    M +S
Sbjct:  415 EKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKATLDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNVKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEPVPVGNPMDNS 596          
BLAST of CX287173 vs. ExPASy Swiss-Prot
Match: RUBB_BRANA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 1.846e-71
Identity = 132/174 (75.86%), Postives = 156/174 (89.66%), Query Frame = 3
Query:    3 QKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVLSNDDPRYGYNAARNRYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDAVVVNIKESEPVP 524
            +K  LNERIA+LSGG+A++QVGAQT  ELK+K+LR+EDALNATKAA+EEGIVVGGGC+LLRL++KV+ IK  LDN+E+K+GA+I KRALSYP KLIAKNAGVNG+ V ++VLSND+ ++GYNAA  +YEDLMAAGIIDPTKVVRCCLEHAASVAKTFL SD VVV IKE EPVP
Sbjct:  415 EKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKAALDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNVKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEPVP 588          
BLAST of CX287173 vs. ExPASy Swiss-Prot
Match: RUBB_SECCE (RuBisCO large subunit-binding protein subunit beta, chloroplastic (Fragment) OS=Secale cereale GN=CPN60 PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.197e-70
Identity = 132/182 (72.53%), Postives = 158/182 (86.81%), Query Frame = 3
Query:    3 QKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVLSNDDPRYGYNAARNRYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDAVVVNIKESEPVPRRKLMPSS 548
            +K  LNERIA+L+GG+A++QVGAQT  ELK+K+LR+EDALNATKAA+EEGIVVGGGC+LLRL+AKV+ IK+ L+N+EQK+GAEI +RAL YP KLIAKNAGVNG+ V ++VLSND+ ++GYNAA  +YEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSD VVV IKE E  P    M +S
Sbjct:  314 EKEKLNERIAKLAGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLAAKVDAIKDTLENDEQKVGAEIVRRALCYPLKLIAKNAGVNGSVVTEKVLSNDNFKFGYNAATGQYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDVVVVEIKEPEAAPLANPMDNS 495          
BLAST of CX287173 vs. ExPASy Swiss-Prot
Match: RUBB_PEA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 262.307 bits (669), Expect = 1.323e-69
Identity = 130/182 (71.43%), Postives = 158/182 (86.81%), Query Frame = 3
Query:    3 QKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVLSNDDPRYGYNAARNRYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDAVVVNIKESEPVPRRKLMPSS 548
            +K  L+ERIA+LSGG+A++QVGAQT  ELK+K+LR+EDALNATKAA+EEGIVVGGGC+LLRL++KV+ IK+ L N+E+K+GA+I KRALSYP KLIAKNAGVNG+ V ++VLS+D+P+YGYNAA  +YEDLMAAGIIDPTKVVRCCLEHA+SVAKTFL SD VVV IKE E  P    M +S
Sbjct:  409 EKEKLSERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKDTLANDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSSDNPKYGYNAATGKYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPESAPVGNPMDNS 590          
BLAST of CX287173 vs. ExPASy Swiss-Prot
Match: RUBC_CHLRE (RuBisCO large subunit-binding protein subunit beta-2 (Fragment) OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 6.359e-64
Identity = 124/175 (70.86%), Postives = 144/175 (82.29%), Query Frame = 3
Query:    3 QKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVLSN-DDPRYGYNAARNRYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDAVVVNIKESEPVP 524
            +K  LNERIARLSGG+AI+QVGAQT  ELK+K+LR+EDALNATKAA+EEGIV+GGGC+LLRLS KV+ IKE L NEEQK+GA+I KRALSYP KLIA NAG NG+ V+ +V+ N D P YGYNAA + +EDLM AGIIDPTKVVRC LE+A SVAKTFL +D VV  I E E  P
Sbjct:   76 EKEKLNERIARLSGGVAIIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVIGGGCTLLRLSQKVDSIKETLSNEEQKMGADIIKRALSYPIKLIANNAGTNGSVVMQRVMDNIDQPYYGYNAATDTFEDLMEAGIIDPTKVVRCSLENAVSVAKTFLLADVVVTEIPEKEKAP 250          
BLAST of CX287173 vs. ExPASy Swiss-Prot
Match: RUBB_CHLRE (RuBisCO large subunit-binding protein subunit beta-1 (Fragment) OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 9.834e-57
Identity = 110/172 (63.95%), Postives = 141/172 (81.98%), Query Frame = 3
Query:    3 QKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVLSN-DDPRYGYNAARNRYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDAVVVNIKESE 515
            ++  L ERIARLSGG+AI+QVGAQT  ELK+K+LR+EDALNAT+AA+EEG+V GGGC+LLRLS KV+ IK  + + EQ++GA+I KRAL YP KLIA+NAGVNG+ V+++V+ N D P YGYNAA + +E+LM  GIIDP+KVVRC +E+A SVAKTFL +D VV  +KE E
Sbjct:  245 EREKLQERIARLSGGVAIIQVGAQTETELKEKKLRVEDALNATRAAVEEGVVPGGGCTLLRLSEKVDVIKRRMTDPEQQMGADIIKRALCYPIKLIAQNAGVNGSVVMNEVMKNLDRPHYGYNAATDSFENLMETGIIDPSKVVRCSMENAVSVAKTFLLADVVVTELKEIE 416          
BLAST of CX287173 vs. ExPASy Swiss-Prot
Match: CH601_TRIEI (60 kDa chaperonin 1 OS=Trichodesmium erythraeum (strain IMS101) GN=groL1 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.968e-45
Identity = 96/170 (56.47%), Postives = 125/170 (73.53%), Query Frame = 3
Query:    6 KNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVLSNDDPRYGYNAARNRYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDAVVVNIKESE 515
            K  L ERIA+L+GG+A+++VGA T  ELKD++LRIEDALNATKAA+EEGIV GGG +L+ LS KVE +K  L+NEE+KIGA+I +RAL  P   IA N+GV G+ +V++V S D    GYN     YEDL+AAGI+DP  VVR  L++A S+A   LT++AVVV   E +
Sbjct:  360 KEKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATKAAVEEGIVPGGGTTLIHLSTKVEELKGSLNNEEEKIGADIVRRALEAPLNQIANNSGVEGSVIVEKVRSTDF-SVGYNVITGEYEDLIAAGILDPAMVVRSALQNAGSIAGMVLTTEAVVVEKPEKK 528          
BLAST of CX287173 vs. ExPASy Swiss-Prot
Match: CH602_ANAVT (60 kDa chaperonin 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL2 PE=3 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 4.285e-44
Identity = 97/167 (58.08%), Postives = 127/167 (76.05%), Query Frame = 3
Query:   15 LNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVLSNDDPRYGYNAARNRYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDAVVVNIKESE 515
            L ERIA+L+GGIA+++VGA T  ELKD++LRIEDALNATKAA+ EGIV GGG +L+ L++KV+ IK+  D EE+KIGA+I KRAL  P + IA NAGV G+ +V +V  + D   GYNAA   +EDL+AAGIIDP KVVR  L++AAS+A   LT++A+VV   E +
Sbjct:  363 LQERIAKLAGGIAVIKVGAATETELKDRKLRIEDALNATKAAVAEGIVPGGGKTLIYLASKVDEIKKNFD-EEEKIGADIVKRALEAPLRQIADNAGVEGSVIVSRV-KDSDFNTGYNAATGEFEDLIAAGIIDPAKVVRSALQNAASIAGLVLTTEAIVVEKPEKK 527          
BLAST of CX287173 vs. ExPASy Swiss-Prot
Match: CH602_ANASP (60 kDa chaperonin 2 OS=Anabaena sp. (strain PCC 7120) GN=groL2 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 9.547e-44
Identity = 96/167 (57.49%), Postives = 126/167 (75.45%), Query Frame = 3
Query:   15 LNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVLSNDDPRYGYNAARNRYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDAVVVNIKESE 515
            L ERIA+L+GGIA+++VGA T  ELKD++LRIEDALNATKAA+ EGIV GGG +L+ L++KV+ IK+  D EE+KIGA+I KRAL  P + IA NAG  G+ +V +V  + D   GYNAA   +EDL+AAGIIDP KVVR  L++AAS+A   LT++A+VV   E +
Sbjct:  363 LQERIAKLAGGIAVIKVGAATETELKDRKLRIEDALNATKAAVAEGIVPGGGKTLIYLASKVDEIKKNFD-EEEKIGADIVKRALEAPLRQIADNAGAEGSVIVSRV-KDSDFNIGYNAATGEFEDLIAAGIIDPAKVVRSALQNAASIAGLVLTTEAIVVEKPEKK 527          
BLAST of CX287173 vs. ExPASy Swiss-Prot
Match: CH602_SYNY3 (60 kDa chaperonin 2 OS=Synechocystis sp. (strain PCC 6803) GN=groL2 PE=1 SV=4)

HSP 1 Score: 173.326 bits (438), Expect = 8.082e-43
Identity = 91/179 (50.84%), Postives = 125/179 (69.83%), Query Frame = 3
Query:    6 KNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVLSNDDPRYGYNAARNRYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDAVVVNIKESEPVPRRKLMP 542
            K  + ERIA+L+GG+A+++VGA T  ELKD++LRIEDALNATKAA+EEGIV GGG +L+RL+ K+E  K  L N+E+++ A+I  +AL  P   +A NAGV G+ +V++V        GYN    + EDL+AAGIIDP KVVR  L++AAS+A   LT++A+VV     +P P    MP
Sbjct:  362 KEKIQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATKAAVEEGIVPGGGTTLIRLAGKIESFKAQLSNDEERVAADIIAKALEAPLHQLASNAGVEGSVIVEKV-KEATGNQGYNVITGKIEDLIAAGIIDPAKVVRSALQNAASIAGMVLTTEALVV----EKPEPAAPAMP 535          
The following BLAST results are available for this feature:
BLAST of CX287173 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RUBB_ARATH1.413e-7173.63RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_BRANA1.846e-7175.86RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_SECCE1.197e-7072.53RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_PEA1.323e-6971.43RuBisCO large subunit-binding protein subunit beta... [more]
RUBC_CHLRE6.359e-6470.86RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_CHLRE9.834e-5763.95RuBisCO large subunit-binding protein subunit beta... [more]
CH601_TRIEI2.968e-4556.4760 kDa chaperonin 1 OS=Trichodesmium erythraeum (s... [more]
CH602_ANAVT4.285e-4458.0860 kDa chaperonin 2 OS=Anabaena variabilis (strain... [more]
CH602_ANASP9.547e-4457.4960 kDa chaperonin 2 OS=Anabaena sp. (strain PCC 71... [more]
CH602_SYNY38.082e-4350.8460 kDa chaperonin 2 OS=Synechocystis sp. (strain P... [more]

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Properties
Property NameValue
Genbank descriptionC01005E05SK Veg1 Citrus clementina cDNA clone C01005E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287173 ID=CX287173; Name=CX287173; organism=Citrus clementina; type=EST; length=601bp
TCCAAAAGAACATTCTGAATGAAAGAATAGCAAGATTATCAGGAGGGATT
GCTATTCTTCAGGTAGGAGCACAAACAGTTGTTGAATTGAAGGATAAACA
ACTCAGGATTGAAGATGCTCTGAATGCAACTAAGGCAGCAATAGAAGAAG
GTATTGTAGTCGGTGGTGGCTGTAGCCTCTTGAGGCTGTCTGCAAAGGTG
GAGGGTATCAAAGAGCTTCTGGATAATGAAGAACAAAAGATTGGAGCAGA
GATCTTCAAGAGAGCATTAAGCTATCCCACAAAACTAATAGCCAAAAACG
CAGGTGTTAATGGCAATTTTGTTGTAGATCAGGTCCTATCCAATGATGAT
CCAAGATACGGTTACAATGCTGCAAGAAACCGTTATGAAGACCTTATGGC
GGCAGGAATCATTGATCCAACTAAGGTAGTTAGATGTTGTTTGGAGCATG
CAGCATCCGTGGCAAAGACTTTTCTAACATCAGATGCTGTTGTAGTCAAC
ATTAAGGAATCAGAGCCCGTGCCAAGGAGGAAACTCATGCCAAGCTCTGC
TGATTCTCTGTTTTCCAAACAAATGCCACCCCACTTTTCAGCAAAAGGGA
A
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