CX287181

Overview
NameCX287181
Unique NameCX287181
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length460
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig684 contig Ccv1_Contig684:500..959. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX287181 vs. ExPASy Swiss-Prot
Match: TL15A_ARATH (Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis thaliana GN=At2g44920 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 8.997e-25
Identity = 53/58 (91.38%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:    1 NLEGALATGNTSFRGSNITGADFTDVPLRDDQREYLCKVADGVNPTTGNATRDTLLCN 174
            NLEGA  TGNTSF+GSNITGADFTDVPLRDDQR YLCKVADGVN TTGNATRDTLLCN
Sbjct:  167 NLEGATVTGNTSFKGSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNATRDTLLCN 224
The following BLAST results are available for this feature:
BLAST of CX287181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TL15A_ARATH8.997e-2591.38Thylakoid lumenal 15 kDa protein 1, chloroplastic ... [more]
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Properties
Property NameValue
Genbank descriptionC01005F02SK Veg1 Citrus clementina cDNA clone C01005F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287181 ID=CX287181; Name=CX287181; organism=Citrus clementina; type=EST; length=460bp
AACTTGGAAGGTGCTCTTGCTACTGGCAACACATCTTTCAGGGGATCGAA
TATAACTGGAGCTGACTTCACCGACGTGCCTTTGAGAGATGATCAACGGG
AATATCTTTGCAAAGTTGCAGATGGGGTAAATCCGACAACCGGAAATGCA
ACCCGGGACACATTGCTCTGCAACTAGAATTTCATTTCCTTGGTACTTCC
CCATCTGGCAAAGAGGAGAGCAACGTCCTTACTTTTGCTACATCAACAGC
ATCAATTTTCATTTGCGTTGAGTGACACAGTTCATGTGCTGCATCTAATG
TAAGACATGAATTTACCTATAAATAGTGGCATTGAGTCATTCTTCAATTT
CTACACAATTTAAAGAAGCTTATTTGTAATTTGCATGATGTAGTAAGCGG
TAAACATGTATTATATAAGAAAAATAATTCTCAATTTCCTAAAAAAAAAA
AAAAAAAAAA
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