CX287205

Overview
NameCX287205
Unique NameCX287205
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length394
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig683 contig Ccv1_Contig683:16..409. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX287205 vs. ExPASy Swiss-Prot
Match: GCSPA_FLAPR (Glycine dehydrogenase [decarboxylating] A, mitochondrial OS=Flaveria pringlei GN=GDCSPA PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 2.512e-67
Identity = 122/131 (93.13%), Postives = 127/131 (96.95%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEP 393
            LPSHPVV+TGGIPAPE+SQPLGTIAAAPWGSALILPISYTYIAMMGS+G+T ASKIAILNANYMAKRLE HYPILFRGVNGTVAHEFIVDLR LK TAGIEPEDVAKRL+DYGFHGPTMSWPVPGTLMIEP
Sbjct:  799 LPSHPVVATGGIPAPEQSQPLGTIAAAPWGSALILPISYTYIAMMGSQGITNASKIAILNANYMAKRLENHYPILFRGVNGTVAHEFIVDLRPLKTTAGIEPEDVAKRLIDYGFHGPTMSWPVPGTLMIEP 929
[Close]
BLAST of CX287205 vs. ExPASy Swiss-Prot
Match: GCSP_FLATR (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria trinervia GN=GDCSPA PE=3 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 4.285e-67
Identity = 122/131 (93.13%), Postives = 126/131 (96.18%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEP 393
            LPSHPVV TGGIPAPE+SQPLGTIAAAPWGSALILPISYTYIAMMGS+G+T ASKIAILNANYMAKRLE HYPILFRGVNGTVAHEFIVDLR LK TAGIEPEDVAKRL+DYGFHGPTMSWPVPGTLMIEP
Sbjct:  796 LPSHPVVPTGGIPAPEQSQPLGTIAAAPWGSALILPISYTYIAMMGSQGITNASKIAILNANYMAKRLENHYPILFRGVNGTVAHEFIVDLRPLKTTAGIEPEDVAKRLIDYGFHGPTMSWPVPGTLMIEP 926
[Close]
BLAST of CX287205 vs. ExPASy Swiss-Prot
Match: GCSP_FLAAN (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria anomala GN=GDCSP PE=3 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 4.285e-67
Identity = 122/131 (93.13%), Postives = 126/131 (96.18%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEP 393
            LPSHPVV TGGIPAPE+SQPLGTIAAAPWGSALILPISYTYIAMMGS+G+T ASKIAILNANYMAKRLE HYPILFRGVNGTVAHEFIVDLR LK TAGIEPEDVAKRL+DYGFHGPTMSWPVPGTLMIEP
Sbjct:  796 LPSHPVVPTGGIPAPEESQPLGTIAAAPWGSALILPISYTYIAMMGSQGITNASKIAILNANYMAKRLENHYPILFRGVNGTVAHEFIVDLRPLKTTAGIEPEDVAKRLIDYGFHGPTMSWPVPGTLMIEP 926
[Close]
BLAST of CX287205 vs. ExPASy Swiss-Prot
Match: GCSPB_FLAPR (Glycine dehydrogenase [decarboxylating] B, mitochondrial OS=Flaveria pringlei GN=GDCSPB PE=3 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 4.285e-67
Identity = 122/131 (93.13%), Postives = 126/131 (96.18%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEP 393
            LPSHPVV TGGIPAPE+SQPLGTIAAAPWGSALILPISYTYIAMMGS+G+T ASKIAILNANYMAKRLE HYPILFRGVNGTVAHEFIVDLR LK TAGIEPEDVAKRL+DYGFHGPTMSWPVPGTLMIEP
Sbjct:  796 LPSHPVVPTGGIPAPEQSQPLGTIAAAPWGSALILPISYTYIAMMGSQGITNASKIAILNANYMAKRLENHYPILFRGVNGTVAHEFIVDLRPLKTTAGIEPEDVAKRLIDYGFHGPTMSWPVPGTLMIEP 926
[Close]
BLAST of CX287205 vs. ExPASy Swiss-Prot
Match: GCSP2_ARATH (Glycine dehydrogenase [decarboxylating] 2, mitochondrial OS=Arabidopsis thaliana GN=At4g33010 PE=1 SV=2)

HSP 1 Score: 252.292 bits (643), Expect = 5.597e-67
Identity = 119/131 (90.84%), Postives = 125/131 (95.42%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEP 393
            LPSHPV+ TGGIP PEK+ PLG I+AAPWGSALILPISYTYIAMMGS GLT+ASKIAILNANYMAKRLEKHYP+LFRGVNGTVAHEFI+DLRG KNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEP
Sbjct:  800 LPSHPVIPTGGIPQPEKTAPLGAISAAPWGSALILPISYTYIAMMGSGGLTDASKIAILNANYMAKRLEKHYPVLFRGVNGTVAHEFIIDLRGFKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEP 930
[Close]
BLAST of CX287205 vs. ExPASy Swiss-Prot
Match: GCSP_SOLTU (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Solanum tuberosum GN=GDCSP PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 7.310e-67
Identity = 118/131 (90.08%), Postives = 127/131 (96.95%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEP 393
            LPSHPVV TGGIP+P+KS+PLG I+AAPWGSALILPISYTYIAMMGSKGLT+ASKIAIL+ANYMAKRLEKHYP+LFRGVNGT AHEFI+DLRG KNTAGIEPEDVAKRL+DYGFHGPTMSWPVPGTLMIEP
Sbjct:  797 LPSHPVVPTGGIPSPDKSEPLGAISAAPWGSALILPISYTYIAMMGSKGLTDASKIAILSANYMAKRLEKHYPVLFRGVNGTCAHEFIIDLRGFKNTAGIEPEDVAKRLIDYGFHGPTMSWPVPGTLMIEP 927
[Close]
BLAST of CX287205 vs. ExPASy Swiss-Prot
Match: GCSP1_ARATH (Glycine dehydrogenase [decarboxylating] 1, mitochondrial OS=Arabidopsis thaliana GN=GDCSP PE=1 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 1.247e-66
Identity = 118/131 (90.08%), Postives = 125/131 (95.42%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEP 393
            LPSHPV+ TGGIP PE++ PLGTI+AAPWGSALILPISYTYIAMMGS GLT+ASKIAILNANYMAKRLE HYP+LFRGVNGTVAHEFI+DLRG KNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEP
Sbjct:  806 LPSHPVIPTGGIPEPEQTSPLGTISAAPWGSALILPISYTYIAMMGSGGLTDASKIAILNANYMAKRLESHYPVLFRGVNGTVAHEFIIDLRGFKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEP 936
[Close]
BLAST of CX287205 vs. ExPASy Swiss-Prot
Match: GCSP_PEA (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Pisum sativum GN=GDCSP PE=1 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 8.082e-66
Identity = 118/131 (90.08%), Postives = 125/131 (95.42%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEP 393
            LPSHPVV TGGIPAPE  QPLG+I+AAPWGSALILPISYTYIAMMGS+GLT+ASKIAILNANYMAKRLE +YP+LFRGVNGTVAHEFI+DLRG KNTAGIEPEDVAKRLMDYGFHGPTMSWPV GTLMIEP
Sbjct:  818 LPSHPVVPTGGIPAPENPQPLGSISAAPWGSALILPISYTYIAMMGSQGLTDASKIAILNANYMAKRLESYYPVLFRGVNGTVAHEFIIDLRGFKNTAGIEPEDVAKRLMDYGFHGPTMSWPVAGTLMIEP 948
[Close]
BLAST of CX287205 vs. ExPASy Swiss-Prot
Match: GCSP_MOUSE (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Mus musculus GN=Gldc PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 4.926e-47
Identity = 91/131 (69.47%), Postives = 104/131 (79.39%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEP 393
            LPSHPV+S   I   E + P+GT++AAPWGS+ ILPIS+ YI MMG KGL EA++IAILNANYMAKRLEKHY +LFRG  G VAHEFI+D R  K +A +E  DVAKRL DYGFH PTMSWPV GTLMIEP
Sbjct:  785 LPSHPVIS---IKPTEGTWPVGTVSAAPWGSSSILPISWAYIKMMGGKGLKEATEIAILNANYMAKRLEKHYRVLFRGARGYVAHEFILDTRPFKKSANVEAVDVAKRLQDYGFHAPTMSWPVAGTLMIEP 912
[Close]
BLAST of CX287205 vs. ExPASy Swiss-Prot
Match: GCSP_CHICK (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Gallus gallus GN=GLDC PE=1 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 1.872e-46
Identity = 91/131 (69.47%), Postives = 103/131 (78.63%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEP 393
            LP+HPV+    I   + + PLGT++AAPWGS+ ILPIS+ YI  MG+KGL  AS+IAILNANYMAKRLEKHY ILFRGV G VAHEFI+D R  K TA IE  D+AKRL DYGFH PTMSWPV GTLMIEP
Sbjct:  764 LPTHPVIK---IQTDKDACPLGTVSAAPWGSSAILPISWVYIKTMGAKGLKHASEIAILNANYMAKRLEKHYKILFRGVRGYVAHEFILDTRPFKKTANIEAVDLAKRLQDYGFHAPTMSWPVAGTLMIEP 891
The following BLAST results are available for this feature:
BLAST of CX287205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 351
Match NameE-valueIdentityDescription
GCSPA_FLAPR2.512e-6793.13Glycine dehydrogenase [decarboxylating] A, mitocho... [more]
GCSP_FLATR4.285e-6793.13Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_FLAAN4.285e-6793.13Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSPB_FLAPR4.285e-6793.13Glycine dehydrogenase [decarboxylating] B, mitocho... [more]
GCSP2_ARATH5.597e-6790.84Glycine dehydrogenase [decarboxylating] 2, mitocho... [more]
GCSP_SOLTU7.310e-6790.08Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP1_ARATH1.247e-6690.08Glycine dehydrogenase [decarboxylating] 1, mitocho... [more]
GCSP_PEA8.082e-6690.08Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_MOUSE4.926e-4769.47Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_CHICK1.872e-4669.47Glycine dehydrogenase [decarboxylating], mitochond... [more]

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Properties
Property NameValue
Genbank descriptionC01005H05SK Veg1 Citrus clementina cDNA clone C01005H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287205 ID=CX287205; Name=CX287205; organism=Citrus clementina; type=EST; length=394bp
CTGCCTTCACATCCTGTGGTATCCACAGGTGGTATTCCTGCCCCTGAAAA
GTCTCAACCCCTGGGCACAATTGCAGCTGCACCCTGGGGCTCTGCACTTA
TCCTGCCAATATCATATACGTACATAGCTATGATGGGTTCTAAAGGACTC
ACTGAGGCTTCAAAGATAGCTATTCTGAATGCAAACTACATGGCAAAACG
TTTGGAGAAACATTACCCCATCCTTTTCCGTGGTGTCAATGGAACAGTTG
CTCATGAATTCATTGTGGACTTAAGAGGCTTGAAGAATACTGCCGGGATA
GAGCCCGAAGATGTTGCCAAACGTCTTATGGATTATGGATTCCATGGACC
AACAATGTCATGGCCTGTTCCAGGCACACTTATGATTGAACCAA
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