CX287219

Overview
NameCX287219
Unique NameCX287219
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length403
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig109 contig Ccv1_Contig109:102..504. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287219 vs. ExPASy Swiss-Prot
Match: PSAH_BRARA (Photosystem I reaction center subunit VI, chloroplastic OS=Brassica rapa GN=PSAH PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 2.187e-42
Identity = 82/113 (72.57%), Postives = 92/113 (81.42%), Query Frame = 1
Query:    1 ATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDI 339
            + +KGLGGSSL G KL +KP+RQSF+PKS +AGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKR            S L Y SA+++GD+
Sbjct:   14 SAVKGLGGSSLTGAKLFIKPSRQSFKPKSTRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSASSTGDV 126          
BLAST of CX287219 vs. ExPASy Swiss-Prot
Match: PSAH2_ARATH (Photosystem I reaction center subunit VI-2, chloroplastic OS=Arabidopsis thaliana GN=PSAH2 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 8.312e-42
Identity = 82/113 (72.57%), Postives = 91/113 (80.53%), Query Frame = 1
Query:    1 ATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDI 339
            A +KGLGGSSLAG KL +KP+RQSF+ KS +AGAVVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR            S L Y SA ++GD+
Sbjct:   14 AAVKGLGGSSLAGAKLFIKPSRQSFKTKSTRAGAVVAKYGDKSVYFDLEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSANSTGDV 126          
BLAST of CX287219 vs. ExPASy Swiss-Prot
Match: PSAH1_ARATH (Photosystem I reaction center subunit VI-1, chloroplastic OS=Arabidopsis thaliana GN=PSAH1 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.418e-41
Identity = 81/113 (71.68%), Postives = 91/113 (80.53%), Query Frame = 1
Query:    1 ATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDI 339
            A IKGLGGSSLAG KL++KP+R SF+PKS +A  VVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR            S L Y SAT++G++
Sbjct:   14 AAIKGLGGSSLAGAKLSIKPSRLSFKPKSIRANGVVAKYGDKSVYFDLEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSATSTGEV 126          
BLAST of CX287219 vs. ExPASy Swiss-Prot
Match: PSAH_SPIOL (Photosystem I reaction center subunit VI, chloroplastic OS=Spinacia oleracea GN=PSAH PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.123e-38
Identity = 76/112 (67.86%), Postives = 87/112 (77.68%), Query Frame = 1
Query:    4 TIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDI 339
            T+KGL GSS+AGTKL +KP RQSF+  + ++GA+VAKYGDKSVYFDLED+ NTTGQWD+YGSDAPSPYNSLQSKFFETFAAPFTKR            S L Y SA A  D+
Sbjct:   14 TLKGLAGSSIAGTKLHIKPARQSFKLNNVRSGAIVAKYGDKSVYFDLEDIANTTGQWDVYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSANAPQDV 125          
BLAST of CX287219 vs. ExPASy Swiss-Prot
Match: PSAH_MAIZE (Photosystem I reaction center subunit VI, chloroplastic OS=Zea mays GN=PSAH PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.379e-34
Identity = 75/112 (66.96%), Postives = 85/112 (75.89%), Query Frame = 1
Query:    7 IKGLGGSSLAGTKLTV-KPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDI 339
            IKGL GSS++G KL V +P+ +S R    +A AVVAKYGDKSVYFDL+D+GNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKR            S LAY SA+AS D+
Sbjct:   14 IKGLAGSSISGRKLAVARPSARSIRRP--RAAAVVAKYGDKSVYFDLDDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLLLGGGSLLAYVSASASPDL 123          
BLAST of CX287219 vs. ExPASy Swiss-Prot
Match: PSAH_ORYSJ (Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. japonica GN=PSAH PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.211e-33
Identity = 72/116 (62.07%), Postives = 85/116 (73.28%), Query Frame = 1
Query:    7 IKGLGGSSLAGTKLTVKPT-----RQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDI 339
            +KGL GSS++G KL V+P+     R + RP++    AVVAKYG+KSVYFDLED+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKR            S +AY SA+AS D+
Sbjct:   12 VKGLAGSSISGRKLAVRPSPRALCRTTRRPRA----AVVAKYGEKSVYFDLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLGGGSLVAYVSASASPDL 123          
BLAST of CX287219 vs. ExPASy Swiss-Prot
Match: PSAH_ORYSI (Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. indica GN=PSAH PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.211e-33
Identity = 72/116 (62.07%), Postives = 85/116 (73.28%), Query Frame = 1
Query:    7 IKGLGGSSLAGTKLTVKPT-----RQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDI 339
            +KGL GSS++G KL V+P+     R + RP++    AVVAKYG+KSVYFDLED+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKR            S +AY SA+AS D+
Sbjct:   12 VKGLAGSSISGRKLAVRPSPRALCRTTRRPRA----AVVAKYGEKSVYFDLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLGGGSLVAYVSASASPDL 123          
BLAST of CX287219 vs. ExPASy Swiss-Prot
Match: PSAH_HORVU (Photosystem I reaction center subunit VI, chloroplastic OS=Hordeum vulgare GN=PSAH PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.500e-32
Identity = 69/115 (60.00%), Postives = 83/115 (72.17%), Query Frame = 1
Query:    1 ATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKA--GAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDI 339
            A +KGL GSS++G KL V+P+  +    + +A   AVVAKYG+KSVYFDL+D+ NTTGQWDLYGSDAPSPYN LQSKFF TFAAPFTKR            S +AY SA+AS D+
Sbjct:   10 AAVKGLSGSSISGRKLAVRPSSAAVSRSTRRARGAAVVAKYGEKSVYFDLDDIANTTGQWDLYGSDAPSPYNGLQSKFFNTFAAPFTKRGLLLKFLLIGGGSLVAYVSASASPDL 124          
BLAST of CX287219 vs. ExPASy Swiss-Prot
Match: PSAH_PEA (Photosystem I reaction center subunit VI (Fragment) OS=Pisum sativum GN=PSAH PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.291e-14
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 1
Query:  112 KYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQ 219
            KYGDKSVYFDLED+GNTTGQWDLYGSDAPSPY+ LQ
Sbjct:    1 KYGDKSVYFDLEDIGNTTGQWDLYGSDAPSPYSXLQ 36          
The following BLAST results are available for this feature:
BLAST of CX287219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PSAH_BRARA2.187e-4272.57Photosystem I reaction center subunit VI, chloropl... [more]
PSAH2_ARATH8.312e-4272.57Photosystem I reaction center subunit VI-2, chloro... [more]
PSAH1_ARATH1.418e-4171.68Photosystem I reaction center subunit VI-1, chloro... [more]
PSAH_SPIOL1.123e-3867.86Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_MAIZE6.379e-3466.96Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_ORYSJ9.211e-3362.07Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_ORYSI9.211e-3362.07Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_HORVU3.500e-3260.00Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_PEA3.291e-1491.67Photosystem I reaction center subunit VI (Fragment... [more]
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Properties
Property NameValue
Genbank descriptionC01006A09SK Veg1 Citrus clementina cDNA clone C01006A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287219 ID=CX287219; Name=CX287219; organism=Citrus clementina; type=EST; length=403bp
GCCACCATCAAAGGCCTTGGAGGCAGCTCTCTTGCTGGAACTAAGCTCAC
CGTCAAGCCAACTCGCCAGAGTTTCAGACCCAAAAGCTTCAAGGCTGGTG
CTGTAGTGGCTAAGTATGGTGATAAGAGTGTGTACTTTGATTTGGAGGAT
TTGGGTAACACCACGGGCCAGTGGGACTTGTACGGATCAGATGCTCCTTC
ACCGTACAACTCTCTTCAGAGCAAGTTCTTTGAGACATTTGCGGCTCCAT
TCACCAAGAGAGGATTATTGCTCAAGTTCTTGATATTGGGAGGAGGTTCA
ACCCTTGCTTACTTCAGTGCTACAGCTAGTGGTGACATTCTCCCAATCAA
GAAGGGCCCTCAACTTCCACCAAAGCTCGGACCACGTGGCAAGATCTAAA
TTA
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