CX287226

Overview
NameCX287226
Unique NameCX287226
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length534
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX287226 vs. ExPASy Swiss-Prot
Match: PREP2_ARATH (Presequence protease 2, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=PREP2 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.190e-33
Identity = 71/115 (61.74%), Postives = 85/115 (73.91%), Query Frame = 3 
Query:    3 TLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDAYQLPDAKGYSSLLRHLLGITXXXXXXXXXXILSTSLKDFKEFADVLEAIKDRGXXXXXXXXXXXXXXNKERANLFEVKKA 347
            TLDIYDGT DFLR L++D+DTLTKAIIGTIGDVD+YQLPDAKGY+SLLRHLL +T          ILSTSLKDFKEFA+ ++++ D+G              N+ER+N FEVKKA
Sbjct:  964 TLDIYDGTGDFLRGLDVDEDTLTKAIIGTIGDVDSYQLPDAKGYTSLLRHLLNVTDEERQIRREEILSTSLKDFKEFAEAIDSVSDKGVAVAVASQEDIDAANRERSNFFEVKKA 1078
[Close]
BLAST of CX287226 vs. ExPASy Swiss-Prot
Match: PREP1_ARATH (Presequence protease 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=PREP1 PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 2.030e-33
Identity = 71/116 (61.21%), Postives = 84/116 (72.41%), Query Frame = 3 
Query:    3 TLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDAYQLPDAKGYSSLLRHLLGITXXXXXXXXXXILSTSLKDFKEFADVLEAIKDRGXXXXXXXXXXXXXXNKERANLFEVKKAL 350
            TLDIYDGT DFLR L++D +TLTKAIIGTIGDVD+YQLPDAKGYSSLLRHLLG+T          IL+TSLKDFK+FA  ++ ++D+G              N ER+N FEVKKAL
Sbjct:  965 TLDIYDGTGDFLRGLDVDQETLTKAIIGTIGDVDSYQLPDAKGYSSLLRHLLGVTDEERQRKREEILTTSLKDFKDFAQAIDVVRDKGVAVAVASAEDIDAANNERSNFFEVKKAL 1080
The following BLAST results are available for this feature:
BLAST of CX287226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PREP2_ARATH1.190e-3361.74Presequence protease 2, chloroplastic/mitochondria... [more]
PREP1_ARATH2.030e-3361.21Presequence protease 1, chloroplastic/mitochondria... [more]
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Properties
Property NameValue
Genbank descriptionC01006B05SK Veg1 Citrus clementina cDNA clone C01006B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287226 ID=CX287226; Name=CX287226; organism=Citrus clementina; type=EST; length=534bp
AAACACTCGACATATATGACGGAACTGTGGATTTCTTGCGGGAGTTGGAA
ATGGATGATGATACATTAACTAAAGCAATTATTGGGACCATTGGAGATGT
AGATGCATACCAGCTGCCTGATGCCAAAGGTTATAGTAGTTTGCTACGCC
ATTTATTAGGAATCACAGAAGAAGAAAGACAAAGGAGGCGAGAAGAGATC
TTATCTACAAGTTTGAAGGACTTCAAGGAATTTGCTGATGTATTGGAGGC
CATAAAAGATAGAGGAGTTGCAGTTGCGGTGGCGTCTCCTGATGATGTTG
ATGCTGCAAACAAAGAGCGTGCCAATTTGTTTGAAGTGAAGAAAGCCCTC
TAAGACCCTGGAAGGTTTTGGAAGACTGGAAAATTGCTCTGATGGCAAGT
GATGCTCTTACCCCAATATTTTCCCATCGGGTACGAAATGCTTGAAGCAT
TTCCAAATTTTTCACAGCAATCAGTAGAAAAATAATGGGAAAGAGGAAAC
AAGTGTTTACAGCATGAGATATATGCTCCATTTC
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